Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 2847.0 1445 100.0
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 2747.2 1478 95.3
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 2288.1 1458 81.4
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 2268.0 1460 81.4
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 2066.2 1455 74.0
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 2015.4 1481 71.9
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 2006.5 1459 72.3
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 2002.6 1461 71.0
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1998.0 1448 71.6
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1983.8 1457 72.0
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1981.8 1457 71.5
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1952.2 1450 71.1
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1952.2 1447 70.8
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1951.8 1455 70.8
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1941.0 1477 68.9
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1931.8 1455 69.5
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1921.4 1456 69.3
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1916.7 1480 68.5
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1914.0 1456 69.1
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1882.5 1462 68.5
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1872.1 1459 67.9
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1872.1 1465 68.3
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1870.1 1462 68.0
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1858.2 1455 67.6
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1850.5 1460 67.6
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1846.2 1456 67.0
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1845.1 1451 67.9
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1842.8 1457 67.1
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1833.2 1493 66.4
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1826.6 1491 66.3
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1826.2 1454 66.5
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1812.7 1454 66.4
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1808.9 1453 66.7
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1803.5 1538 64.3
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1802.3 1470 65.2
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1795.0 1468 65.9
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1793.5 1459 65.0
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1748.0 1505 65.6
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1718.4 1468 64.0
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1705.3 1467 64.0
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1701.4 1493 62.9
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1695.2 1269 70.5
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1680.6 1463 61.7
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1666.7 1464 62.1
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1648.6 1484 60.8
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1645.6 1473 59.9
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1644.0 1480 60.6
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1644.0 1527 60.4
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1640.6 1445 61.9
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1631.7 1492 60.7
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1629.8 1251 69.5
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1625.5 1462 60.7
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1615.5 1463 60.4
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1610.1 1460 61.2
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1610.1 1270 67.6
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1609.7 1455 60.1
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1605.5 1379 63.6
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1604.0 1485 59.9
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1603.2 1363 64.8
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1590.5 1468 59.7
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1586.2 1488 59.7
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1582.0 1477 59.6
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1572.4 1465 59.8
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1558.5 1462 59.2
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1539.6 1446 59.1
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1537.3 1442 59.2
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1531.5 1456 58.5
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1527.7 1445 58.5
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1526.5 1455 58.6
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1520.8 1468 57.8
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1510.4 1455 57.9
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1497.3 1415 58.3
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1476.5 1449 57.0
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1456.8 1458 56.0
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1448.7 1455 56.4
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1448.0 1469 57.1
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1446.4 1457 56.4
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1445.3 1457 56.3
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1439.9 1458 56.2
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1439.5 1458 56.2
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1391.7 1387 55.1
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1385.5 1456 54.3
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1379.8 1108 67.1
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1377.1 1321 58.7
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1373.2 1441 53.5
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1340.1 1464 51.5
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1330.1 1460 51.1
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1313.5 1086 66.9
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 0.0e+00 1300.4 1112 63.5
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1279.2 1310 56.6
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1270.4 1176 59.3
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 1227.6 1149 59.8
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1210.7 916 69.3
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 0.0e+00 1177.5 1345 51.7
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 0.0e+00 1174.5 1050 62.1
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 0.0e+00 1098.6 1336 48.7
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 7.8e-275 951.4 1009 53.9
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 1.5e-265 920.6 946 55.7
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 4.4e-262 909.1 1513 40.4
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 2.2e-261 906.7 1529 40.2
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 5.1e-258 895.6 1484 40.7
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 1.4e-239 834.3 1545 36.4
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 1.5e-217 761.1 829 52.1
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 7.0e-215 752.3 519 73.2
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 2.0e-214 750.7 675 63.4
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 2.3e-181 641.0 427 75.2
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 1.5e-172 611.7 1827 30.2
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 2.3e-170 604.4 869 45.1
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 6.6e-157 559.7 581 57.1
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 1.1e-146 525.8 450 66.2
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 1.6e-142 511.9 597 50.4
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 3.9e-133 480.7 440 60.9
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 3.5e-126 457.6 1343 30.2
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 9.7e-116 422.9 787 42.1
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 9.1e-98 363.2 402 53.0
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 2.6e-92 345.1 217 77.9
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 9.7e-92 343.2 355 54.6
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 1.5e-76 292.7 267 59.9
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 3.6e-70 271.6 1149 27.1
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 3.7e-67 261.5 262 57.6
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 1.7e-43 183.0 163 62.6
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 1.3e-27 130.2 93 73.1
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 1.6e-25 123.2 88 65.9
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 2.7e-25 122.5 83 72.3
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 2.7e-25 122.5 94 67.0
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.9e-18 99.8 67 67.2
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 7.1e-18 97.8 103 56.3
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 1.2e-17 97.1 65 66.2
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 1.2e-17 97.1 67 67.2
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 3.5e-17 95.5 85 60.0
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 2.5e-15 89.4 85 54.1
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 3.3e-15 89.0 104 54.8
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 1.1e-10 73.9 54 66.7
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 1.0e-08 67.4 44 70.5
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 6.7e-08 64.7 68 52.9
Zm00001eb324780 Zea mays HOM05D005760 ORTHO05D000367 4.8e-06 58.5 36 75.0


User provided reference genes

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