Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 9.3e-116 420.2 214 100.0
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 8.7e-98 360.5 217 89.4
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 3.5e-70 268.9 212 72.6
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 2.1e-59 233.0 211 65.4
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 2.1e-59 233.0 206 64.1
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 4.0e-58 228.8 215 63.7
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 9.1e-55 217.6 211 61.6
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 1.5e-52 210.3 191 61.8
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 1.2e-51 207.2 214 58.4
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 1.0e-50 204.1 214 57.9
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 6.3e-48 194.9 201 58.2
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 9.2e-47 191.0 216 56.9
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.5e-46 188.7 212 55.7
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 2.3e-45 186.4 205 57.1
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 2.3e-45 186.4 206 55.8
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.8e-45 185.7 209 54.5
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 5.0e-45 185.3 209 54.5
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 9.5e-44 181.0 213 52.6
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 2.8e-43 179.5 207 55.1
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 3.6e-43 179.1 236 52.5
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 8.0e-43 177.9 193 56.0
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.4e-42 177.2 209 54.1
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 3.0e-42 176.0 192 56.2
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 3.0e-42 176.0 206 53.4
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 4.0e-42 175.6 208 55.8
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 4.0e-42 175.6 205 52.7
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 5.7e-41 171.8 204 52.5
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 1.3e-40 170.6 206 53.4
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 3.7e-40 169.1 171 54.4
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 3.7e-40 169.1 197 56.3
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 8.3e-40 167.9 175 60.6
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 1.1e-39 167.5 221 48.4
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 7.0e-39 164.9 200 54.5
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 7.0e-39 164.9 214 50.5
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 1.0e-37 161.0 137 61.3
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 1.0e-37 161.0 178 53.9
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 5.0e-37 158.7 136 63.2
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 5.0e-37 158.7 198 50.5
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 6.6e-37 158.3 173 57.8
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 1.2e-35 154.1 205 53.2
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 2.8e-35 152.9 196 51.0
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 2.8e-35 152.9 193 52.3
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 3.6e-35 152.5 201 49.8
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 3.6e-35 152.5 212 47.6
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 8.0e-35 151.4 188 47.9
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 6.8e-34 148.3 232 45.7
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 8.9e-34 147.9 203 51.2
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 1.5e-33 147.1 176 51.1
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 2.0e-33 146.7 170 53.5
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.4e-33 146.0 190 45.8
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 4.4e-33 145.6 230 43.9
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 4.4e-33 145.6 181 51.9
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 5.8e-33 145.2 229 47.6
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 7.5e-33 144.8 188 46.3
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 1.7e-32 143.7 210 48.6
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 1.4e-31 140.6 196 46.9
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 1.4e-31 140.6 212 47.6
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.4e-31 140.6 221 43.4
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 4.1e-31 139.0 214 48.1
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 9.2e-31 137.9 206 46.1
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 1.2e-30 137.5 191 48.2
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 1.6e-30 137.1 171 48.5
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 3.5e-30 136.0 213 45.5
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 3.0e-29 132.9 152 50.7
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 5.0e-29 132.1 205 46.8
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 6.6e-29 131.7 214 40.7
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 8.6e-29 131.3 187 48.1
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.1e-28 131.0 191 46.1
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 1.9e-28 130.2 183 48.6
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 2.5e-28 129.8 166 44.0
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 2.5e-28 129.8 217 42.9
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 4.3e-28 129.0 209 44.5
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 5.6e-28 128.6 210 45.7
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 1.6e-27 127.1 197 43.1
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 2.1e-27 126.7 220 46.4
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 2.1e-27 126.7 167 51.5
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 2.8e-27 126.3 213 46.5
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 3.6e-27 125.9 213 43.2
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 4.7e-27 125.6 209 42.1
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 6.2e-27 125.2 217 42.9
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 6.2e-27 125.2 217 42.9
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 6.2e-27 125.2 217 42.9
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 1.4e-26 124.0 222 43.2
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 2.3e-26 123.2 221 45.7
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 3.1e-26 122.9 222 43.2
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 4.0e-26 122.5 226 45.6
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 4.0e-26 122.5 172 47.1
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 5.2e-26 122.1 201 46.3
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.5e-25 120.6 227 41.9
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 2.0e-25 120.2 195 41.5
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 2.0e-25 120.2 195 42.1
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 2.6e-25 119.8 200 45.5
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 5.8e-25 118.6 212 40.6
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 5.8e-25 118.6 212 40.6
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 7.5e-25 118.2 174 49.4
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 7.5e-25 118.2 209 40.2
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 9.8e-25 117.9 152 47.4
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.3e-24 117.5 149 48.3
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 1.3e-24 117.5 223 43.0
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 1.3e-24 117.5 183 44.3
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 4.9e-24 115.5 179 42.5
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 6.4e-24 115.2 218 39.9
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 6.4e-24 115.2 214 42.1
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 8.3e-24 114.8 187 45.5
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 1.1e-23 114.4 229 42.4
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 2.4e-23 113.2 190 43.2
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 3.2e-23 112.8 202 41.1
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 5.4e-23 112.1 223 40.4
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 9.2e-23 111.3 215 41.4
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 2.7e-22 109.8 206 43.7
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 2.7e-22 109.8 202 40.6
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 2.7e-22 109.8 193 40.4
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 4.6e-22 109.0 215 40.9
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 6.0e-22 108.6 204 39.7
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 6.0e-22 108.6 208 40.4
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 1.3e-21 107.5 216 39.8
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 5.1e-21 105.5 203 40.4
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 5.1e-21 105.5 186 40.9
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 1.1e-20 104.4 173 40.5
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.9e-20 103.6 201 44.3
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.9e-20 103.6 201 41.3
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 2.5e-20 103.2 189 42.3
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 4.3e-20 102.4 195 39.0
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 5.6e-20 102.1 173 42.2
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 5.6e-20 102.1 170 45.3
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.2e-19 100.9 196 43.9
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 8.1e-19 98.2 192 44.3
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 1.1e-18 97.8 215 38.6
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 5.2e-18 95.5 160 46.9
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 1.7e-16 90.5 151 40.4
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 8.4e-16 88.2 227 36.1
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 1.1e-15 87.8 133 47.4
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.4e-15 87.4 216 37.0
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 1.4e-15 87.4 229 34.1
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 5.4e-15 85.5 156 41.7
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 2.1e-14 83.6 148 43.9
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 6.0e-14 82.0 218 33.0
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 6.0e-14 82.0 179 36.3
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 4.7e-11 72.4 120 48.3
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 1.1e-10 71.2 175 42.9
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 3.1e-10 69.7 131 45.0
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 3.2e-07 59.7 95 51.6
HPP92_006868 Vanilla planifolia HOM05D064031 ORTHO05D005944 5.4e-07 58.9 153 32.0
Lsat_1_v5_gn_3_86260 Lactuca sativa HOM05D005317 ORTHO05D005146 7.1e-07 58.5 146 25.3
TAR381G1423 Trochodendron aralioides HOM05D005065 ORTHO05D005944 1.2e-06 57.8 52 53.8
HPP92_005697 Vanilla planifolia HOM05D005065 ORTHO05D005944 3.5e-06 56.2 152 32.2
HPP92_006851 Vanilla planifolia HOM05D064031 ORTHO05D005944 3.5e-06 56.2 153 32.7


User provided reference genes

Program Settings