Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 5.2e-117 424.5 227 100.0
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 4.3e-111 404.8 227 95.6
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 9.3e-98 360.5 228 81.6
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 4.8e-86 321.6 228 78.9
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 2.2e-83 312.8 235 69.8
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 7.9e-81 304.3 234 74.4
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.0e-80 303.9 239 72.8
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 1.3e-80 303.5 226 71.2
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.8e-80 303.1 226 70.8
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 3.9e-80 302.0 235 74.5
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 5.1e-80 301.6 226 70.8
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 1.5e-79 300.1 234 67.1
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 3.3e-79 298.9 233 67.8
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 3.3e-79 298.9 226 70.4
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 3.3e-79 298.9 222 68.9
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 4.3e-79 298.5 229 70.3
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 5.6e-79 298.1 231 70.6
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 5.6e-79 298.1 238 66.0
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 9.6e-79 297.4 225 71.1
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 9.6e-79 297.4 232 69.0
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 1.6e-78 296.6 229 74.2
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.6e-78 296.6 234 67.1
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 2.8e-78 295.8 222 68.9
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 4.8e-78 295.0 232 73.7
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 6.2e-78 294.7 238 68.1
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 6.2e-78 294.7 231 68.4
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 1.1e-77 293.9 236 70.3
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 1.1e-77 293.9 231 68.4
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 1.1e-77 293.9 231 68.4
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 4.0e-77 292.0 234 66.2
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 9.0e-77 290.8 228 74.6
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 1.5e-76 290.0 221 71.0
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.5e-76 290.0 220 72.3
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 1.5e-76 290.0 230 70.4
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 2.0e-76 289.7 216 72.7
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 2.0e-76 289.7 234 65.8
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 2.6e-76 289.3 221 71.0
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 2.6e-76 289.3 227 74.0
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 3.4e-76 288.9 218 67.9
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 4.5e-76 288.5 220 70.5
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 4.5e-76 288.5 221 71.0
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 5.8e-76 288.1 220 68.6
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 5.8e-76 288.1 220 68.6
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 5.8e-76 288.1 221 66.5
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 5.8e-76 288.1 227 67.8
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 7.6e-76 287.7 220 69.5
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 1.0e-75 287.3 220 70.5
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 1.0e-75 287.3 220 70.5
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 1.0e-75 287.3 229 66.8
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 1.0e-75 287.3 216 71.8
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 1.0e-75 287.3 233 64.4
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.0e-75 287.3 227 70.9
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 1.3e-75 287.0 221 70.6
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 1.3e-75 287.0 232 69.0
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.3e-75 287.0 221 69.7
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 1.3e-75 287.0 225 69.3
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 1.7e-75 286.6 220 71.8
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 2.2e-75 286.2 231 69.7
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 2.9e-75 285.8 237 65.4
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 3.8e-75 285.4 227 73.1
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 3.8e-75 285.4 187 73.8
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 3.8e-75 285.4 235 64.3
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 4.9e-75 285.0 221 65.2
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 8.4e-75 284.3 221 70.6
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.1e-74 283.9 221 65.2
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 1.1e-74 283.9 221 69.7
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 1.1e-74 283.9 226 69.5
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.1e-74 283.9 223 70.4
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 1.4e-74 283.5 234 65.4
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 2.5e-74 282.7 233 63.9
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 2.5e-74 282.7 239 63.2
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 3.2e-74 282.3 229 70.7
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 4.2e-74 282.0 224 72.8
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 4.2e-74 282.0 236 69.9
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 7.1e-74 281.2 235 70.2
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 9.3e-74 280.8 235 62.6
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 1.6e-73 280.0 234 62.8
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.7e-73 279.3 233 64.8
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 1.0e-72 277.3 227 68.3
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 1.3e-72 276.9 224 63.4
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 3.9e-72 275.4 227 71.4
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 5.1e-72 275.0 227 69.2
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 8.7e-72 274.2 223 69.5
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 1.9e-71 273.1 226 69.5
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.5e-71 272.7 226 61.5
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 2.5e-71 272.7 181 77.9
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 3.3e-71 272.3 230 64.8
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 3.3e-71 272.3 223 61.9
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 1.3e-70 270.4 227 66.5
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 1.3e-70 270.4 230 65.7
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 2.8e-70 269.2 238 61.3
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 3.7e-70 268.9 183 77.0
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.1e-69 267.3 226 59.7
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 6.9e-69 264.6 238 62.2
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 3.4e-68 262.3 227 65.2
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 5.8e-68 261.5 196 71.4
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.0e-67 260.8 214 63.1
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.1e-65 253.1 178 75.8
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 7.9e-65 251.1 191 70.2
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 7.9e-65 251.1 216 64.4
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 6.7e-64 248.1 197 68.0
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.3e-62 243.8 181 69.1
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.3e-62 243.8 179 72.6
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 2.2e-62 243.0 207 67.6
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 1.8e-61 240.0 189 67.7
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.0e-60 236.5 179 70.4
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 3.8e-59 232.3 175 70.3
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.4e-58 230.3 227 63.9
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 5.9e-52 208.4 136 69.9
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 5.5e-50 201.8 134 70.1
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 3.7e-46 189.1 139 64.7
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 2.4e-45 186.4 139 63.3
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 9.1e-45 184.5 183 56.8
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 1.2e-44 184.1 139 62.6
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 2.6e-44 183.0 139 61.2
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 5.9e-44 181.8 139 60.4
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 7.7e-44 181.4 139 60.4
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 2.2e-43 179.9 139 59.7
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 3.8e-43 179.1 132 62.1
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 1.1e-42 177.6 139 59.0
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 1.1e-42 177.6 139 59.0
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 1.1e-42 177.6 139 59.0
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 1.5e-42 177.2 139 59.0
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 1.5e-42 177.2 139 59.0
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.9e-42 176.8 139 58.3
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.9e-42 176.8 139 59.0
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 5.2e-40 168.7 137 55.5
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 3.1e-37 159.5 102 74.5
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.2e-36 157.5 155 49.7
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 3.5e-36 156.0 156 50.6
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 6.5e-35 151.8 105 76.2
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 2.3e-32 143.3 103 76.7
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.4e-29 134.0 130 60.8
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 2.4e-29 133.3 163 44.2
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.4e-29 133.3 192 42.7
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 1.2e-28 131.0 131 60.3
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 1.6e-28 130.6 178 47.2
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.2e-27 126.7 199 41.2
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 8.8e-24 114.8 227 42.7
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.7e-22 110.5 181 40.3
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 3.7e-22 109.4 175 35.4
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 1.4e-21 107.5 87 62.1
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 1.6e-20 104.0 199 35.7
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 4.5e-20 102.4 196 34.2
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 8.6e-19 98.2 71 63.4
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.4e-16 90.9 67 67.2
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.8e-16 90.5 97 57.7
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 7.5e-15 85.1 101 44.6
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.8e-13 80.5 108 40.7
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 1.4e-08 64.3 48 60.4
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.4e-07 59.7 79 40.5
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.4e-07 59.7 79 40.5


User provided reference genes

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