Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 1.6e-223 779.2 433 100.0
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 9.4e-192 673.7 414 89.1
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 5.7e-173 611.3 442 81.0
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 4.4e-165 585.1 436 78.2
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 4.7e-151 538.5 447 72.0
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 1.3e-135 487.3 437 71.2
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 5.4e-131 471.9 455 61.8
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 2.2e-124 449.9 386 64.2
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 6.4e-124 448.4 456 62.9
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 9.3e-123 444.5 447 62.0
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 1.5e-120 437.2 457 62.4
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 1.5e-120 437.2 449 61.5
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 4.8e-119 432.2 447 60.2
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 1.5e-117 427.2 453 62.0
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 5.8e-117 425.2 445 59.8
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 2.9e-116 422.9 449 56.8
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 1.9e-115 420.2 468 55.6
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 7.9e-114 414.8 445 55.7
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 1.1e-112 411.0 444 61.7
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 3.3e-112 409.5 451 56.8
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 2.1e-111 406.8 444 60.6
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 4.8e-111 405.6 329 68.1
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 6.2e-111 405.2 451 56.1
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 8.2e-111 404.8 446 54.9
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 2.0e-109 400.2 468 53.6
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 4.5e-109 399.1 447 56.4
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 5.0e-108 395.6 379 61.5
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 9.3e-107 391.3 440 60.0
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 6.7e-105 385.2 456 54.2
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 2.5e-104 383.3 324 66.0
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 9.7e-104 381.3 454 55.7
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 1.6e-103 380.6 440 57.7
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 1.5e-101 374.0 447 53.0
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 1.7e-100 370.5 478 50.6
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 2.9e-100 369.8 474 48.9
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 5.0e-100 369.0 455 54.3
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 8.5e-100 368.2 454 51.5
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.9e-99 367.1 516 50.2
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 3.2e-99 366.3 448 52.0
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 4.2e-99 365.9 446 55.4
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 4.2e-99 365.9 469 50.3
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 5.5e-99 365.5 469 50.7
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 1.6e-98 364.0 432 58.1
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 2.7e-98 363.2 470 51.9
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 4.6e-98 362.5 463 51.8
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 1.4e-97 360.9 283 70.7
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 8.8e-97 358.2 471 54.8
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 1.1e-96 357.8 454 51.5
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 3.7e-95 352.8 388 57.0
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 4.8e-95 352.4 391 55.5
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 8.2e-95 351.7 450 52.9
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 9.1e-94 348.2 475 48.4
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 1.2e-93 347.8 426 53.5
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.5e-93 347.4 446 52.2
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 1.5e-93 347.4 389 55.0
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 3.4e-93 346.3 444 55.6
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 1.0e-92 344.7 480 47.5
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 1.3e-92 344.4 446 52.5
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.3e-92 344.4 444 50.9
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 5.0e-92 342.4 315 61.6
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 8.5e-92 341.7 492 46.1
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 8.5e-92 341.7 495 46.9
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 1.9e-91 340.5 365 57.5
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 7.2e-91 338.6 448 51.3
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.6e-90 336.3 444 52.5
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.4e-89 334.3 444 51.4
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 2.6e-88 330.1 442 54.3
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 7.4e-88 328.6 332 58.1
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.1e-86 323.2 473 49.7
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 4.1e-86 322.8 469 49.7
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 5.9e-85 318.9 451 51.7
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.7e-84 317.4 364 52.2
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.5e-83 314.3 320 57.5
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 5.5e-83 312.4 392 50.3
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 9.4e-83 311.6 491 45.8
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 1.0e-81 308.1 365 51.8
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 2.6e-80 303.5 431 47.1
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 3.3e-80 303.1 308 57.1
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.1e-78 296.6 346 50.9
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 5.3e-78 295.8 464 44.0
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 9.1e-78 295.0 329 54.1
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 2.2e-76 290.4 327 56.3
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.5e-75 287.7 399 49.4
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 4.2e-75 286.2 345 57.4
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 5.5e-75 285.8 303 56.8
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 9.4e-75 285.0 439 46.2
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 8.8e-73 278.5 345 50.1
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 3.4e-72 276.6 269 59.1
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 5.7e-72 275.8 389 48.1
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 9.8e-72 275.0 500 39.4
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 2.8e-71 273.5 351 52.4
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 4.8e-71 272.7 454 44.9
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 4.8e-71 272.7 386 47.4
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 2.4e-70 270.4 424 47.6
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 2.4e-70 270.4 276 59.1
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 4.1e-70 269.6 308 53.6
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 2.0e-69 267.3 312 54.5
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 7.7e-69 265.4 309 54.4
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 2.2e-68 263.8 304 53.9
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 2.9e-68 263.5 228 62.7
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 1.5e-67 261.2 307 52.4
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 1.9e-67 260.8 310 52.3
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 1.6e-66 257.7 310 52.6
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 1.0e-65 255.0 189 71.4
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 1.8e-65 254.2 267 59.2
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 2.3e-65 253.8 316 51.6
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 1.5e-64 251.1 304 54.9
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 1.5e-64 251.1 304 54.9
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 2.2e-63 247.3 305 54.1
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 8.3e-63 245.4 273 57.5
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 7.0e-62 242.3 270 54.1
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 2.0e-61 240.7 350 46.9
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 7.7e-61 238.8 320 51.9
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.0e-60 238.4 323 49.2
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 3.6e-58 229.9 309 46.6
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.2e-56 224.9 244 54.9
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 1.8e-54 217.6 372 43.0
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.3e-47 194.9 310 43.5
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 1.7e-47 194.5 268 48.5
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 3.7e-47 193.4 235 49.4
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.0e-45 187.6 395 36.2
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 6.6e-44 182.6 211 52.1
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 1.1e-43 181.8 180 59.4
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 4.0e-41 173.3 183 55.2
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 6.4e-39 166.0 374 35.3
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.4e-38 164.9 411 34.3
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 1.3e-36 158.3 311 37.3
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 5.1e-36 156.4 444 32.0
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 9.5e-35 152.1 134 64.2
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 1.4e-33 148.3 152 60.5
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 1.2e-32 145.2 108 71.3
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.5e-32 144.8 247 39.7
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 7.8e-29 132.5 185 44.3
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 6.6e-28 129.4 186 46.8
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.1e-27 128.6 71 83.1
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.5e-27 128.3 139 56.8
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 4.3e-27 126.7 71 81.7
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 2.1e-26 124.4 173 44.5
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.8e-26 124.0 69 81.2
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 3.1e-25 120.6 160 48.8
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.1e-25 120.6 70 82.9
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 4.0e-25 120.2 94 63.8
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 6.8e-25 119.4 165 41.2
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 3.4e-24 117.1 257 38.9
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 7.6e-24 115.9 105 58.1
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.2e-23 114.4 270 37.4
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 4.9e-23 113.2 130 48.5
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 5.1e-20 103.2 88 56.8
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.5e-19 101.7 243 37.0
Cpa.g.sc7.86 Carica papaya HOM05D004030 ORTHO05D033917 7.1e-14 82.8 161 37.9
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.1e-14 82.8 98 50.0
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 9.3e-14 82.4 175 34.9
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.1e-13 81.3 243 32.1
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.7e-13 80.9 243 32.1
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.7e-13 80.9 243 32.1
Lj5g0018916 Lotus japonicus HOM05D004030 ORTHO05D004952 3.9e-12 77.0 105 46.7
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 3.9e-12 77.0 79 55.7
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 8.7e-12 75.9 258 30.6
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 1.9e-11 74.7 94 38.3
SalBow5G0967 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.3e-10 72.0 72 56.9
CSS0043633 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.8e-09 68.2 84 50.0
CSS0023566 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.2e-08 65.5 96 47.9
TPR.G16979 Trifolium pratense HOM05D004030 ORTHO05D004952 7.6e-08 62.8 101 43.6
FAN16G3751 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.2e-07 61.2 143 42.0


User provided reference genes

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