Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013749 Carpinus fangiana HOM05D007433 ORTHO05D009199 4.7e-58 227.6 114 100.0
Haze_06413 Corylus avellana HOM05D007433 ORTHO05D009199 1.8e-54 215.7 114 96.5
QL12p038428 Quercus lobata HOM05D007433 ORTHO05D009199 2.3e-41 172.2 116 78.4
CiPaw.07G172700 Carya illinoinensis HOM05D007433 ORTHO05D009199 7.5e-40 167.2 117 79.5
Hma1.2p1_1170F.1_g263410 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 7.1e-38 160.6 106 76.4
Thecc.08G085300 Theobroma cacao HOM05D007433 ORTHO05D009199 9.2e-38 160.2 113 75.2
CiPaw.08G051700 Carya illinoinensis HOM05D007433 ORTHO05D009199 1.2e-37 159.8 115 73.9
Dinv44935 Davidia involucrata HOM05D007433 ORTHO05D009199 1.7e-36 156.0 115 73.9
GSVIVG01009308001 Vitis vinifera HOM05D007433 ORTHO05D009199 3.0e-36 155.2 105 74.3
Potri.014G013600 Populus trichocarpa HOM05D007433 ORTHO05D009199 3.9e-36 154.8 104 76.9
vmacro04593 Vaccinium macrocarpon HOM05D007433 ORTHO05D009199 7.3e-35 150.6 108 69.4
Manes.05G183000 Manihot esculenta HOM05D007433 ORTHO05D009199 2.8e-34 148.7 111 69.4
Manes.18G048800 Manihot esculenta HOM05D007433 ORTHO05D009199 6.2e-34 147.5 111 69.4
Actinidia29630 Actinidia chinensis HOM05D001492 ORTHO05D001400 3.1e-33 145.2 111 69.4
Potri.002G116200 Populus trichocarpa HOM05D007433 ORTHO05D009199 2.0e-32 142.5 108 68.5
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 2.6e-32 142.1 115 67.0
TAR628G1336 Trochodendron aralioides HOM05D007433 ORTHO05D009199 7.6e-32 140.6 105 67.6
Dinv39208 Davidia involucrata HOM05D007433 ORTHO05D009199 9.9e-32 140.2 92 78.3
TAR376G0199 Trochodendron aralioides HOM05D007433 ORTHO05D009199 2.2e-31 139.0 104 68.3
Aqoxy6G02471 Aquilegia oxysepala HOM05D007433 ORTHO05D009199 2.9e-31 138.7 108 67.6
COL.COLO4_28471 Corchorus olitorius HOM05D007433 ORTHO05D009199 3.8e-31 138.3 109 68.8
Sed0005155 Sechium edule HOM05D007433 ORTHO05D009199 6.4e-31 137.5 103 70.9
ClCG05G026590 Citrullus lanatus HOM05D007433 ORTHO05D009199 1.4e-30 136.3 103 69.9
MELO3C016834.2 Cucumis melo HOM05D007433 ORTHO05D009199 1.9e-30 136.0 103 69.9
Actinidia19585 Actinidia chinensis HOM05D002375 ORTHO05D002457 7.1e-30 134.0 107 64.5
TPR.G33670 Trifolium pratense HOM05D007433 ORTHO05D009199 2.1e-29 132.5 115 65.2
Cc10_g07560 Coffea canephora HOM05D007433 ORTHO05D009199 3.5e-29 131.7 112 62.5
Nn5g30654 Nelumbo nucifera HOM05D007433 ORTHO05D009199 4.6e-29 131.3 100 67.0
Glyma.06G048300 Glycine max HOM05D007433 ORTHO05D009199 6.0e-29 131.0 108 66.7
Medtr3g103330 Medicago truncatula HOM05D007433 ORTHO05D009199 6.0e-29 131.0 102 67.6
Sabra02G0091500 Salix brachista HOM05D007433 ORTHO05D009199 1.0e-28 130.2 90 73.3
Lj1g0004253 Lotus japonicus HOM05D007433 ORTHO05D009199 1.3e-28 129.8 115 65.2
Atru.chr13.862 Acer truncatum HOM05D007433 ORTHO05D009199 2.3e-28 129.0 121 59.5
VMungo1309G0469 Vigna mungo HOM05D007433 ORTHO05D009199 2.3e-28 129.0 107 66.4
Gorai.010G026800 Gossypium raimondii HOM05D007433 ORTHO05D009199 3.9e-28 128.3 122 55.7
Phvul.009G073600 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 5.1e-28 127.9 117 62.4
Prupe.1G419900 Prunus persica HOM05D007433 ORTHO05D009199 5.1e-28 127.9 104 67.3
Gohir.A06G025100 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.1e-27 126.7 107 58.9
Lalb_Chr11g0062981 Lupinus albus HOM05D007433 ORTHO05D009199 3.3e-27 125.2 111 64.0
Gohir.D06G022200 Gossypium hirsutum HOM05D007433 ORTHO05D009199 5.6e-27 124.4 122 55.7
Psat5g037160 Pisum sativum HOM05D007433 ORTHO05D009199 9.6e-27 123.6 124 62.1
MD15G1066100 Malus domestica HOM05D007433 ORTHO05D009199 1.2e-26 123.2 103 62.1
Peaxi162Scf00340g00061 Petunia axillaris HOM05D007433 ORTHO05D009199 4.7e-26 121.3 108 63.0
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 1.4e-25 119.8 106 61.3
Glyma.04G047400 Glycine max HOM05D007433 ORTHO05D009199 1.8e-25 119.4 83 74.7
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 2.4e-25 119.0 128 55.5
Solyc04g077570.1 Solanum lycopersicum HOM05D007433 ORTHO05D009199 2.4e-25 119.0 93 62.4
TAR381G0154 Trochodendron aralioides HOM05D007433 ORTHO05D009199 4.0e-25 118.2 113 59.3
Cpa.g.sc142.56 Carica papaya HOM05D007433 ORTHO05D009199 5.2e-25 117.9 121 59.5
Lalb_Chr08g0245211 Lupinus albus HOM05D007433 ORTHO05D009199 6.9e-25 117.5 107 61.7
Eucgr.F00094 Eucalyptus grandis HOM05D007433 ORTHO05D009199 1.5e-24 116.3 92 62.0
Gohir.A02G080400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.5e-24 116.3 108 61.1
Gohir.D02G088300 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.5e-24 116.3 108 61.1
Gorai.005G098900 Gossypium raimondii HOM05D007433 ORTHO05D009199 1.5e-24 116.3 108 61.1
Gorai.009G221600 Gossypium raimondii HOM05D007433 ORTHO05D009199 2.0e-24 115.9 96 62.5
PGSC0003DMG400004914 Solanum tuberosum HOM05D007433 ORTHO05D009199 2.6e-24 115.5 93 60.2
Gohir.D05G214900 Gossypium hirsutum HOM05D007433 ORTHO05D009199 4.4e-24 114.8 96 61.5
ECA247G0789 Erigeron canadensis HOM05D007433 ORTHO05D009199 5.8e-24 114.4 115 54.8
CsaV3_4G035230 Cucumis sativus L. HOM05D007433 ORTHO05D009199 7.6e-24 114.0 73 78.1
Gohir.A05G211600 Gossypium hirsutum HOM05D007433 ORTHO05D009199 7.6e-24 114.0 96 61.5
HanXRQChr10g0295351 Helianthus annuus HOM05D007433 ORTHO05D009199 9.9e-24 113.6 102 59.8
Sopen04g031210 Solanum pennellii HOM05D007433 ORTHO05D009199 1.3e-23 113.2 110 59.1
CANSAT25G0221 Cannabis sativa HOM05D007433 ORTHO05D009199 3.8e-23 111.7 104 60.6
CAN.G1239.9 Capsicum annuum HOM05D007433 ORTHO05D009199 3.8e-23 111.7 96 57.3
Ciclev10002882m.g Citrus clementina HOM05D007433 ORTHO05D009199 3.8e-23 111.7 115 54.8
FAN20G2053 Fragaria x ananassa HOM05D007433 ORTHO05D009199 3.8e-23 111.7 111 63.1
FvH4_2g32740 Fragaria vesca HOM05D007433 ORTHO05D009199 4.9e-23 111.3 110 60.9
FAN15G2820 Fragaria x ananassa HOM05D007433 ORTHO05D009199 4.9e-23 111.3 109 64.2
FAN24G3110 Fragaria x ananassa HOM05D007433 ORTHO05D009199 4.9e-23 111.3 110 60.9
RcHm_v2.0_Chr6g0309931 Rosa chinensis HOM05D007433 ORTHO05D009199 6.4e-23 110.9 108 62.0
Sc02g0008080 Simmondsia chinensis HOM05D007433 ORTHO05D009199 6.4e-23 110.9 113 54.9
Nitab4.5_0013161g0010 Nicotiana tabacum HOM05D007433 ORTHO05D009199 1.9e-22 109.4 101 58.4
FAN27G2289 Fragaria x ananassa HOM05D007433 ORTHO05D009199 5.4e-22 107.8 109 62.4
Oeu014281.1 Olea europaea HOM05D007433 ORTHO05D009199 9.3e-22 107.1 97 59.8
Lsat_1_v5_gn_1_480 Lactuca sativa HOM05D007433 ORTHO05D009199 1.6e-21 106.3 110 55.5
AUR62035005 Chenopodium quinoa HOM05D007433 ORTHO05D009199 8.7e-20 100.5 92 58.7
EL10Ac1g02355 Beta vulgaris HOM05D007433 ORTHO05D009199 1.5e-19 99.8 123 48.0
Glyma.17G233300 Glycine max HOM05D007433 ORTHO05D009199 1.3e-18 96.7 109 57.8
Phvul.001G029300 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 4.8e-18 94.7 72 72.2
Migut.C00395 Erythranthe guttata HOM05D007433 ORTHO05D009199 2.4e-17 92.4 77 66.2
VMungo0647G2383 Vigna mungo HOM05D007433 ORTHO05D009199 2.4e-17 92.4 105 56.2
Ca_15891_v3 Cicer arietinum L. HOM05D007433 ORTHO05D009199 5.3e-17 91.3 110 51.8
Phvul.011G135200 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 6.9e-17 90.9 79 63.3
SalBow7G1382 Salvia bowleyana HOM05D007433 ORTHO05D009199 5.8e-16 87.8 97 55.7
Atru.chr13.863 Acer truncatum HOM05D007433 ORTHO05D009199 9.9e-16 87.0 81 58.0
DCAR_008860 Daucus carota HOM05D007433 ORTHO05D009199 7.1e-14 80.9 93 49.5
Manes.13G109500 Manihot esculenta HOM05D007433 ORTHO05D009199 7.9e-13 77.4 87 52.9
Hma1.2p1_3243F.1_g334320 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 3.9e-12 75.1 90 51.1
Potri.014G007000 Populus trichocarpa HOM05D007433 ORTHO05D009199 8.7e-12 73.9 67 53.7
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 1.6e-10 69.7 96 45.8
Gorai.003G032000 Gossypium raimondii HOM05D007433 ORTHO05D009199 1.8e-09 66.2 72 45.8
COL.COLO4_11609 Corchorus olitorius HOM05D007433 ORTHO05D009199 3.1e-09 65.5 67 50.7
SalBow3G4039 Salvia bowleyana HOM05D007433 ORTHO05D009199 3.1e-09 65.5 47 61.7
Duzib264G0228 Durio zibethinus HOM05D007433 ORTHO05D000169 5.3e-09 64.7 64 51.6
Gohir.A02G150000 Gossypium hirsutum HOM05D007433 ORTHO05D009199 6.9e-09 64.3 71 45.1
Zm00001eb217410 Zea mays HOM05D007433 ORTHO05D009199 1.2e-08 63.5 102 44.1
Gohir.D03G030400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.5e-08 63.2 61 50.8
Atru.chr3.1055 Acer truncatum HOM05D007433 ORTHO05D009199 2.0e-08 62.8 69 53.6
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 2.0e-08 62.8 69 47.8
Cfa004384 Carpinus fangiana HOM05D007433 ORTHO05D009199 2.6e-08 62.4 87 42.5
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 3.4e-08 62.0 54 51.9
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 4.5e-08 61.6 55 56.4
Thecc.01G075800 Theobroma cacao HOM05D007433 ORTHO05D009199 5.8e-08 61.2 76 47.4
Prupe.6G217400 Prunus persica HOM05D020383 ORTHO05D022607 7.6e-08 60.8 62 50.0
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 9.9e-08 60.5 57 56.1
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 9.9e-08 60.5 51 54.9
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 1.3e-07 60.1 49 59.2
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.7e-07 59.7 75 38.7
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 1.7e-07 59.7 60 51.7
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 1.7e-07 59.7 71 43.7
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.7e-07 59.7 48 58.3
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.7e-07 59.7 50 58.0
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 2.2e-07 59.3 66 48.5
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 2.2e-07 59.3 49 59.2
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 2.2e-07 59.3 74 45.9
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.9e-07 58.9 48 56.2
Hma1.2p1_0424F.1_g150510 Hydrangea macrophylla HOM05D016189 ORTHO05D009199 2.9e-07 58.9 78 46.2
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 2.9e-07 58.9 54 51.9
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.9e-07 58.9 54 53.7
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 3.8e-07 58.5 58 50.0
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 3.8e-07 58.5 53 47.2
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 3.8e-07 58.5 49 57.1
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.8e-07 58.5 49 57.1
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 4.9e-07 58.2 52 53.8
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 4.9e-07 58.2 53 47.2
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 4.9e-07 58.2 53 47.2
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 4.9e-07 58.2 53 47.2
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 4.9e-07 58.2 51 54.9
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 6.4e-07 57.8 79 44.3
Haze_15029 Corylus avellana HOM05D007433 ORTHO05D020523 6.4e-07 57.8 95 38.9
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 6.4e-07 57.8 53 50.9
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 8.4e-07 57.4 49 53.1
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 8.4e-07 57.4 67 44.8
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 8.4e-07 57.4 49 57.1
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 8.4e-07 57.4 51 52.9
Peaxi162Scf00548g00006 Petunia axillaris HOM05D016189 ORTHO05D009199 8.4e-07 57.4 77 42.9
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 1.1e-06 57.0 49 55.1
Eucgr.H02327 Eucalyptus grandis HOM05D007433 ORTHO05D009199 1.1e-06 57.0 60 45.0
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.1e-06 57.0 49 53.1
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.1e-06 57.0 49 53.1
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.1e-06 57.0 49 53.1
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 1.1e-06 57.0 55 52.7
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 1.4e-06 56.6 52 44.2
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 1.4e-06 56.6 54 50.0
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 1.4e-06 56.6 64 48.4
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 1.4e-06 56.6 67 46.3
Nitab4.5_0001072g0010 Nicotiana tabacum HOM05D016189 ORTHO05D009199 1.4e-06 56.6 79 39.2
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 1.4e-06 56.6 58 48.3
QL06p038982 Quercus lobata HOM05D007433 ORTHO05D009199 1.4e-06 56.6 72 41.7
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.4e-06 56.6 47 57.4
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.9e-06 56.2 49 57.1
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.9e-06 56.2 49 51.0
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 3.2e-06 55.5 69 40.6
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 3.2e-06 55.5 47 53.2
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 3.2e-06 55.5 49 53.1
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 3.2e-06 55.5 47 53.2
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 3.2e-06 55.5 47 53.2
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 3.2e-06 55.5 48 56.2
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 3.2e-06 55.5 52 48.1
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 3.2e-06 55.5 57 49.1
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 4.2e-06 55.1 57 47.4
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 4.2e-06 55.1 95 34.7
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 4.2e-06 55.1 60 41.7
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 4.2e-06 55.1 51 51.0
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 4.2e-06 55.1 52 51.9
RcHm_v2.0_Chr2g0108601 Rosa chinensis HOM05D020383 ORTHO05D022607 4.2e-06 55.1 47 53.2
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.5e-06 54.7 45 57.8
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.5e-06 54.7 45 57.8
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 5.5e-06 54.7 45 57.8
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 7.1e-06 54.3 48 54.2
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 7.1e-06 54.3 55 47.3
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 7.1e-06 54.3 51 51.0
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 7.1e-06 54.3 40 55.0
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 9.3e-06 53.9 57 47.4
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 9.3e-06 53.9 48 52.1
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 9.3e-06 53.9 53 49.1
Nitab4.5_0000142g0360 Nicotiana tabacum HOM05D016189 ORTHO05D009199 9.3e-06 53.9 47 48.9


User provided reference genes

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