Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 1.1e-239 832.8 410 100.0
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 4.0e-200 701.4 412 86.4
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 3.4e-191 671.8 411 83.2
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 1.7e-182 642.9 411 80.3
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 1.6e-180 636.3 411 79.1
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 1.0e-179 633.6 412 78.6
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 3.6e-177 625.2 411 78.1
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 1.4e-176 623.2 411 76.2
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 6.9e-176 620.9 411 77.1
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 1.5e-175 619.8 411 76.9
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 5.8e-175 617.8 414 77.1
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 9.9e-175 617.1 411 76.2
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.2e-174 615.9 411 76.4
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.2e-174 615.9 411 76.4
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 2.9e-174 615.5 403 78.4
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 6.4e-174 614.4 411 76.2
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 8.4e-174 614.0 407 76.4
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 1.1e-173 613.6 410 75.6
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 1.4e-173 613.2 411 75.2
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.4e-173 613.2 414 76.3
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 4.2e-173 611.7 411 76.4
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.1e-172 609.4 411 75.7
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 2.3e-171 605.9 413 75.5
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 3.0e-171 605.5 411 75.9
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 3.9e-171 605.1 428 74.3
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 1.9e-170 602.8 411 74.9
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 2.5e-170 602.4 411 75.9
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 9.6e-170 600.5 417 75.1
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 3.6e-169 598.6 411 74.7
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 6.2e-169 597.8 411 74.2
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 6.2e-169 597.8 411 75.2
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 1.8e-168 596.3 403 75.2
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 4.0e-168 595.1 406 76.1
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 9.0e-168 594.0 411 74.7
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 2.0e-167 592.8 405 76.0
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 1.1e-165 587.0 407 73.7
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 5.4e-165 584.7 411 74.2
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 1.8e-163 579.7 412 70.1
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.3e-163 579.3 411 73.7
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 2.3e-163 579.3 438 70.1
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 5.1e-163 578.2 411 71.8
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.5e-162 576.6 412 73.5
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 1.9e-162 576.2 411 72.7
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 3.3e-162 575.5 412 73.3
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.3e-162 575.5 411 73.2
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 6.2e-161 571.2 411 72.7
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 6.9e-160 567.8 438 68.3
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 1.7e-158 563.1 415 70.6
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 8.4e-158 560.8 413 70.0
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 1.1e-157 560.5 412 71.4
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 4.2e-157 558.5 411 71.5
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 7.1e-157 557.8 413 72.2
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 2.1e-156 556.2 413 70.0
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.8e-155 553.1 440 67.5
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 5.1e-155 551.6 412 69.2
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 8.7e-155 550.8 413 69.7
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 7.4e-154 547.7 368 76.4
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 1.6e-153 546.6 411 68.4
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 2.1e-153 546.2 412 68.9
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 2.1e-153 546.2 410 69.0
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 2.1e-153 546.2 411 68.1
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 2.8e-153 545.8 411 69.6
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 3.7e-153 545.4 411 68.1
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 1.4e-152 543.5 457 64.6
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 2.4e-152 542.7 418 66.5
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 3.1e-152 542.3 410 68.0
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 4.0e-152 542.0 410 68.3
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 1.2e-151 540.4 413 69.0
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 1.2e-151 540.4 410 66.8
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 3.4e-151 538.9 412 69.9
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 7.6e-151 537.7 410 67.6
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 3.8e-150 535.4 411 69.3
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 5.0e-150 535.0 412 65.3
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 1.1e-149 533.9 407 68.3
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 9.3e-149 530.8 403 70.5
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 2.7e-148 529.3 414 67.4
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 6.1e-148 528.1 403 68.2
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 2.3e-147 526.2 414 67.1
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 5.1e-147 525.0 411 67.4
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 1.6e-145 520.0 417 66.9
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 8.2e-145 517.7 411 67.9
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 4.1e-144 515.4 406 67.2
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 1.3e-142 510.4 418 63.9
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 2.5e-141 506.1 406 66.5
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 2.1e-140 503.1 402 66.2
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 7.9e-140 501.1 403 66.5
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 2.3e-139 499.6 415 64.3
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 1.1e-138 497.3 410 63.7
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 3.3e-138 495.7 416 64.7
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 1.1e-136 490.7 412 63.8
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 9.4e-133 477.6 426 61.0
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.4e-131 473.8 446 58.1
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 4.4e-130 468.8 319 77.4
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 6.3e-129 464.9 408 60.8
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.2e-124 450.7 404 60.4
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 3.0e-123 446.0 404 59.9
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 3.9e-123 445.7 402 59.7
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 2.8e-121 439.5 409 57.2
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 4.8e-121 438.7 409 59.7
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 4.8e-121 438.7 430 57.0
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 8.2e-121 438.0 391 61.9
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 4.1e-120 435.6 410 58.3
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 1.7e-118 430.3 307 71.0
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 2.9e-118 429.5 415 60.2
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 1.6e-116 423.7 409 56.0
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 1.8e-115 420.2 284 75.0
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 8.8e-115 417.9 415 55.9
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 5.0e-110 402.1 459 51.6
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 8.6e-102 374.8 319 63.0
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 5.4e-96 355.5 408 50.5
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 9.2e-96 354.8 436 48.4
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 3.4e-90 336.3 438 49.1
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 6.4e-89 332.0 402 47.5
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 4.6e-87 325.9 406 45.6
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 4.6e-87 325.9 452 47.6
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 4.4e-82 309.3 395 45.6
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 5.4e-80 302.4 289 57.8
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 3.0e-78 296.6 434 41.9
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 4.4e-74 282.7 251 60.6
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 9.6e-61 238.4 249 50.6
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 3.1e-59 233.4 159 71.7
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 1.0e-54 218.4 156 75.6
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.8e-38 164.5 120 73.3
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 5.1e-38 162.9 120 72.5
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 8.7e-38 162.2 120 73.3
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 1.5e-37 161.4 116 72.4
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 6.3e-36 156.0 120 70.8
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 7.9e-31 139.0 88 77.3
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 6.3e-28 129.4 97 74.2
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 3.1e-27 127.1 103 58.3
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 4.1e-27 126.7 132 54.5
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 7.7e-26 122.5 116 58.6
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 2.7e-23 114.0 83 69.9
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.5e-21 107.5 68 79.4
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 8.8e-14 82.4 97 43.3
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 2.0e-13 81.3 82 59.8
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 2.8e-12 77.4 64 59.4
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 8.2e-12 75.9 51 72.5
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 5.3e-11 73.2 107 37.4
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 3.5e-10 70.5 342 25.4
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 4.5e-10 70.1 45 68.9


User provided reference genes

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