Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013741 Carpinus fangiana HOM05D006874 ORTHO05D008334 3.6e-208 728.0 374 100.0
Haze_22393 Corylus avellana HOM05D006874 ORTHO05D008334 3.8e-149 531.9 381 77.4
Haze_22401 Corylus avellana HOM05D006874 ORTHO05D008334 3.8e-149 531.9 381 77.4
QL12p038579 Quercus lobata HOM05D006874 ORTHO05D008334 1.9e-116 423.3 398 62.8
CiPaw.07G172200 Carya illinoinensis HOM05D006874 ORTHO05D008334 3.5e-78 296.2 379 48.3
Manes.05G183400 Manihot esculenta HOM05D006874 ORTHO05D008334 2.5e-76 290.0 381 47.8
TAR628G0654 Trochodendron aralioides HOM05D006874 ORTHO05D008334 4.3e-76 289.3 390 48.2
Manes.18G049200 Manihot esculenta HOM05D006874 ORTHO05D008334 1.1e-74 284.6 385 46.8
Dinv39206 Davidia involucrata HOM05D006874 ORTHO05D008334 5.1e-69 265.8 388 47.7
Duzib093G1642 Durio zibethinus HOM05D006874 ORTHO05D008334 8.2e-67 258.5 383 45.7
Nn6g34522 Nelumbo nucifera HOM05D006874 ORTHO05D008334 8.7e-61 238.4 389 42.7
RcHm_v2.0_Chr6g0309981 Rosa chinensis HOM05D006874 ORTHO05D008334 1.5e-60 237.7 386 43.5
Duzib116G0206 Durio zibethinus HOM05D006874 ORTHO05D008334 2.5e-60 236.9 382 43.7
Thecc.08G084900 Theobroma cacao HOM05D006874 ORTHO05D008334 6.9e-58 228.8 374 42.2
Actinidia19297 Actinidia chinensis HOM05D006874 ORTHO05D008334 9.0e-58 228.4 389 42.4
Sabra14G0008000 Salix brachista HOM05D006874 ORTHO05D008334 1.5e-57 227.6 376 43.1
Nn5g30659 Nelumbo nucifera HOM05D006874 ORTHO05D008334 3.4e-57 226.5 386 43.8
Potri.014G013200 Populus trichocarpa HOM05D006874 ORTHO05D008334 4.5e-57 226.1 383 42.0
Eucgr.F02227 Eucalyptus grandis HOM05D006874 ORTHO05D008334 4.2e-55 219.5 379 39.3
Potri.002G115600 Populus trichocarpa HOM05D006874 ORTHO05D008334 1.1e-52 211.5 419 39.6
Prupe.1G419500 Prunus persica HOM05D006874 ORTHO05D008334 1.5e-52 211.1 368 43.8
Atru.chr13.867 Acer truncatum HOM05D006874 ORTHO05D008334 2.0e-52 210.7 315 45.7
TWI56G0226 Tripterygium wilfordii HOM05D006874 ORTHO05D008334 4.3e-52 209.5 378 41.0
Ciclev10016010m.g Citrus clementina HOM05D006874 ORTHO05D008334 4.8e-51 206.1 372 41.9
FAN15G0895 Fragaria x ananassa HOM05D006874 ORTHO05D008334 3.1e-50 203.4 386 40.9
FAN27G0759 Fragaria x ananassa HOM05D006874 ORTHO05D008334 1.0e-48 198.4 387 40.3
FvH4_2g32690 Fragaria vesca HOM05D006874 ORTHO05D008334 2.9e-48 196.8 386 41.2
MD08G1078600 Malus domestica HOM05D006874 ORTHO05D008334 3.8e-48 196.4 395 40.0
CANSAT25G0531 Cannabis sativa HOM05D006874 ORTHO05D008334 6.5e-48 195.7 372 38.7
Actinidia10219 Actinidia chinensis HOM05D006874 ORTHO05D008334 5.5e-47 192.6 379 37.7
Aqoxy6G02484 Aquilegia oxysepala HOM05D006874 ORTHO05D008334 9.4e-47 191.8 401 38.7
Lalb_Chr23g0267621 Lupinus albus HOM05D006874 ORTHO05D008334 3.6e-46 189.9 379 37.2
MBI16_g45151_MAGBIO Magnolia biondii HOM05D006874 ORTHO05D008334 6.1e-46 189.1 380 37.6
vmacro21419 Vaccinium macrocarpon HOM05D006874 ORTHO05D008334 8.8e-45 185.3 375 38.7
FAN20G1691 Fragaria x ananassa HOM05D006874 ORTHO05D008334 1.1e-44 184.9 372 39.8
Cc10_g07600 Coffea canephora HOM05D006874 ORTHO05D008334 2.0e-44 184.1 362 37.8
Rhsim06G0064400 Rhododendron simsii HOM05D006874 ORTHO05D008334 2.0e-44 184.1 373 39.7
Oeu053642.1 Olea europaea HOM05D006874 ORTHO05D008334 2.8e-43 180.3 362 34.8
Nitab4.5_0002796g0010 Nicotiana tabacum HOM05D006874 ORTHO05D008334 4.8e-43 179.5 366 35.8
Nitab4.5_0001426g0040 Nicotiana tabacum HOM05D006874 ORTHO05D008334 1.1e-42 178.3 361 37.7
Medtr3g103400 Medicago truncatula HOM05D006874 ORTHO05D008334 1.8e-42 177.6 390 36.2
PGR031G0049 Punica granatum HOM05D006874 ORTHO05D008334 2.4e-42 177.2 376 33.8
Gohir.D05G215200 Gossypium hirsutum HOM05D006874 ORTHO05D008334 7.0e-42 175.6 371 38.8
Dinv09539 Davidia involucrata HOM05D006874 ORTHO05D008334 9.1e-42 175.3 369 37.4
Phvul.001G029700 Phaseolus vulgaris HOM05D006874 ORTHO05D008334 7.7e-41 172.2 377 35.5
Glyma.17G233100 Glycine max HOM05D006874 ORTHO05D008334 1.0e-40 171.8 376 35.6
MSTRG.24387 Avicennia marina HOM05D006874 ORTHO05D008334 2.9e-40 170.2 363 35.8
Gorai.009G221900 Gossypium raimondii HOM05D006874 ORTHO05D008334 3.8e-40 169.9 376 37.8
Psat0s1031g0080 Pisum sativum HOM05D006874 ORTHO05D008334 1.4e-39 167.9 379 35.9
PSO541G5864 Papaver somniferum HOM05D006874 ORTHO05D008334 4.7e-38 162.9 403 36.7
Gohir.A05G211900 Gossypium hirsutum HOM05D006874 ORTHO05D008334 8.0e-38 162.2 373 35.9
Psat5g037000 Pisum sativum HOM05D006874 ORTHO05D008334 3.9e-37 159.8 377 35.3
Glyma.14G089075 Glycine max HOM05D006874 ORTHO05D008334 1.1e-36 158.3 377 34.7
Ca_15889_v3 Cicer arietinum L. HOM05D006874 ORTHO05D008334 1.5e-36 157.9 382 33.5
PSO675G5853 Papaver somniferum HOM05D006874 ORTHO05D008334 7.4e-36 155.6 415 35.7
Sabra02G0091300 Salix brachista HOM05D006874 ORTHO05D008334 7.4e-36 155.6 382 33.2
Glyma.06G048600 Glycine max HOM05D006874 ORTHO05D008334 2.2e-35 154.1 397 33.5
Cpa.g.sc524.2 Carica papaya HOM05D006874 ORTHO05D008334 4.8e-35 152.9 387 33.6
PGSC0003DMG400004918 Solanum tuberosum HOM05D006874 ORTHO05D008334 4.8e-35 152.9 369 32.0
Hund05278 Selenicereus undatus HOM05D006874 ORTHO05D008334 1.8e-34 151.0 388 36.1
Migut.C00474 Erythranthe guttata HOM05D006874 ORTHO05D008334 4.1e-34 149.8 364 34.6
Medtr1g017530 Medicago truncatula HOM05D006874 ORTHO05D008334 1.7e-32 144.4 377 33.2
Solyc04g077535.1 Solanum lycopersicum HOM05D006874 ORTHO05D008334 1.7e-32 144.4 376 32.4
TPR.G13116 Trifolium pratense HOM05D006874 ORTHO05D008334 6.5e-32 142.5 380 33.9
Gohir.A06G025400 Gossypium hirsutum HOM05D006874 ORTHO05D008334 1.9e-31 141.0 372 33.1
Gorai.010G027100 Gossypium raimondii HOM05D006874 ORTHO05D008334 2.5e-31 140.6 372 33.1
SalBow7G3254 Salvia bowleyana HOM05D006874 ORTHO05D008334 2.5e-31 140.6 359 32.9
Gohir.D06G022500 Gossypium hirsutum HOM05D006874 ORTHO05D008334 5.5e-31 139.4 372 32.8
MELO3C016836.2 Cucumis melo HOM05D006874 ORTHO05D008334 9.4e-31 138.7 370 37.3
ATR0739G189 Amborella trichopoda HOM05D006874 ORTHO05D008334 1.6e-30 137.9 354 36.7
Sc15g0005390 Simmondsia chinensis HOM05D006874 ORTHO05D008334 1.6e-30 137.9 373 33.2
Cfa004701 Carpinus fangiana HOM05D006874 ORTHO05D008334 2.7e-30 137.1 369 31.7
EL10Ac1g02352 Beta vulgaris HOM05D006874 ORTHO05D008334 2.3e-29 134.0 386 30.1
CsaV3_4G035240 Cucumis sativus L. HOM05D006874 ORTHO05D008334 2.3e-29 134.0 372 34.1
VMungo0647G0698 Vigna mungo HOM05D006874 ORTHO05D008334 3.0e-29 133.7 373 31.9
AUR62037457 Chenopodium quinoa HOM05D006874 ORTHO05D008334 5.2e-29 132.9 385 30.6
Potri.001G290000 Populus trichocarpa HOM05D006874 ORTHO05D008334 5.2e-29 132.9 363 32.2
VMungo1309G0435 Vigna mungo HOM05D006874 ORTHO05D008334 8.8e-29 132.1 375 32.5
AUR62035010 Chenopodium quinoa HOM05D006874 ORTHO05D008334 1.2e-28 131.7 393 31.3
Dinv16069 Davidia involucrata HOM05D006874 ORTHO05D008334 7.5e-28 129.0 374 34.5
Actinidia00356 Actinidia chinensis HOM05D006874 ORTHO05D008334 1.3e-27 128.3 218 39.9
CSS0036555 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 1.3e-27 128.3 195 42.1
Phvul.009G073900 Phaseolus vulgaris HOM05D006874 ORTHO05D008334 1.7e-27 127.9 388 32.5
CSS0047478 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 2.2e-27 127.5 373 32.2
Lj1g0014879 Lotus japonicus HOM05D006874 ORTHO05D008334 2.2e-27 127.5 377 32.9
Potri.009G085500 Populus trichocarpa HOM05D006874 ORTHO05D008334 2.8e-27 127.1 370 34.1
CiPaw.06G164000 Carya illinoinensis HOM05D006874 ORTHO05D008334 3.7e-27 126.7 373 30.8
Sed0017147 Sechium edule HOM05D006874 ORTHO05D008334 6.3e-27 125.9 377 33.4
Sabra16G0181500 Salix brachista HOM05D006874 ORTHO05D008334 8.3e-27 125.6 366 33.6
MD15G1065400 Malus domestica HOM05D006874 ORTHO05D008334 2.4e-26 124.0 195 43.1
MBI16_g41242_MAGBIO Magnolia biondii HOM05D006874 ORTHO05D008334 3.1e-26 123.6 271 38.0
CSS0007120 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 1.2e-25 121.7 369 31.7
TAR625G1551 Trochodendron aralioides HOM05D006874 ORTHO05D008334 4.5e-25 119.8 144 44.4
FAN24G0724 Fragaria x ananassa HOM05D006874 ORTHO05D008334 7.7e-25 119.0 198 44.9
ClCG05G026570 Citrullus lanatus HOM05D006874 ORTHO05D008334 3.8e-24 116.7 376 32.7
Lj5g0027457 Lotus japonicus HOM05D006874 ORTHO05D008334 5.0e-24 116.3 367 32.2
QL11p029345 Quercus lobata HOM05D006874 ORTHO05D008334 5.0e-24 116.3 359 28.7
Haze_10303 Corylus avellana HOM05D006874 ORTHO05D008334 6.5e-24 115.9 351 29.6
Psat6g017400 Pisum sativum HOM05D006874 ORTHO05D008334 1.6e-22 111.3 372 29.3
Sopen04g031160 Solanum pennellii HOM05D006874 ORTHO05D008334 3.6e-22 110.2 296 32.1
DCAR_020062 Daucus carota HOM05D006874 ORTHO05D008334 4.0e-21 106.7 357 31.4
TAR376G0413 Trochodendron aralioides HOM05D006874 ORTHO05D008334 4.0e-21 106.7 168 45.2
Hma1.2p1_1170F.1_g263450 Hydrangea macrophylla HOM05D006874 ORTHO05D008334 6.8e-21 105.9 112 48.2
MSTRG.25026 Avicennia marina HOM05D006874 ORTHO05D008334 3.4e-20 103.6 243 35.4
Manes.07G056800 Manihot esculenta HOM05D006874 ORTHO05D008334 1.7e-19 101.3 359 28.4
SGA_v2.0_scaffold14G07085 Striga asiatica HOM05D000285 ORTHO05D000241 2.2e-19 100.9 115 46.1
COL.COLO4_28465 Corchorus olitorius HOM05D006874 ORTHO05D008334 2.7e-17 94.0 205 36.6
CDE02G2198 Ceratophyllum demersum HOM05D006874 ORTHO05D008334 1.0e-16 92.0 370 28.9
RhsimUnG0041100 Rhododendron simsii HOM05D063883 ORTHO05D008334 1.7e-16 91.3 369 29.5
RhsimUnG0123100 Rhododendron simsii HOM05D063883 ORTHO05D008334 1.7e-16 91.3 369 29.5
Gohir.A01G123500 Gossypium hirsutum HOM05D006874 ORTHO05D008334 3.8e-16 90.1 370 30.3
Gorai.002G136000 Gossypium raimondii HOM05D006874 ORTHO05D008334 2.5e-15 87.4 369 30.4
Ciclev10030239m.g Citrus clementina HOM05D006874 ORTHO05D008334 2.8e-14 84.0 106 38.7
Cpa.g.sc91.58 Carica papaya HOM05D016697 ORTHO05D018163 3.6e-14 83.6 381 25.7
Migut.O00023 Erythranthe guttata HOM05D006874 ORTHO05D008334 3.2e-10 70.5 134 40.3
arahy.Tifrunner.gnm1.ann1.0IC8QA Arachis hypogaea HOM05D006874 ORTHO05D008334 5.4e-10 69.7 328 29.3
TAR625G0319 Trochodendron aralioides HOM05D006874 ORTHO05D008334 5.4e-10 69.7 115 39.1
COL.COLO4_32486 Corchorus olitorius HOM05D016697 ORTHO05D018163 2.0e-09 67.8 382 25.9
Thecc.02G119800 Theobroma cacao HOM05D016697 ORTHO05D018163 1.3e-08 65.1 375 25.9
HPP92_019577 Vanilla planifolia HOM05D025517 ORTHO05D019338 1.3e-08 65.1 372 25.3
Gohir.D01G111300 Gossypium hirsutum HOM05D006874 ORTHO05D008334 4.3e-07 60.1 366 26.8
arahy.Tifrunner.gnm1.ann1.WJQ75P Arachis hypogaea HOM05D006874 ORTHO05D008334 6.1e-06 56.2 159 30.2


User provided reference genes

Program Settings