Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 4.2e-84 314.7 164 100.0
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 4.1e-63 245.0 194 68.0
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 4.7e-27 125.2 144 50.7
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 2.0e-25 119.8 137 48.9
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 3.4e-25 119.0 146 45.9
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 5.8e-25 118.2 145 49.0
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.9e-24 115.9 146 47.9
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.1e-23 114.0 152 50.7
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 1.4e-23 113.6 146 50.7
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 7.1e-23 111.3 146 47.3
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 7.1e-23 111.3 146 47.3
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 1.2e-22 110.5 146 47.3
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 2.1e-22 109.8 148 48.0
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.7e-22 109.4 146 46.6
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 2.3e-21 106.3 142 47.2
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 3.0e-21 105.9 144 43.8
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 6.6e-21 104.8 157 43.9
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 8.6e-21 104.4 145 45.5
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 1.1e-20 104.0 136 46.3
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 3.3e-20 102.4 144 47.9
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 1.6e-19 100.1 164 42.7
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 1.6e-19 100.1 141 41.8
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.1e-19 99.8 140 45.0
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 2.1e-19 99.8 147 44.9
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 3.6e-19 99.0 166 39.2
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 1.1e-18 97.4 161 40.4
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 1.1e-18 97.4 138 45.7
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.4e-18 97.1 147 46.3
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 1.8e-18 96.7 141 41.1
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 2.4e-18 96.3 164 36.0
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.4e-18 96.3 140 43.6
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.4e-18 96.3 140 43.6
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 2.4e-18 96.3 176 37.5
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 8.9e-18 94.4 142 42.3
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 8.9e-18 94.4 141 38.3
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.2e-17 94.0 116 48.3
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 1.2e-17 94.0 139 44.6
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 1.5e-17 93.6 149 40.9
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 2.0e-17 93.2 146 43.2
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 2.6e-17 92.8 142 38.0
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 5.8e-17 91.7 133 44.4
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 5.8e-17 91.7 183 34.4
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.6e-17 91.3 140 42.1
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 1.3e-16 90.5 165 35.8
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.2e-16 89.7 150 42.0
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 3.8e-16 89.0 168 36.3
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 4.9e-16 88.6 160 35.0
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 4.9e-16 88.6 153 38.6
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 6.4e-16 88.2 151 41.1
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 6.4e-16 88.2 150 39.3
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 1.1e-15 87.4 152 37.5
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.9e-15 86.7 175 33.1
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 4.2e-15 85.5 101 51.5
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 4.2e-15 85.5 133 45.9
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 4.2e-15 85.5 141 40.4
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 4.2e-15 85.5 159 37.7
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.4e-15 85.1 141 40.4
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 9.2e-15 84.3 140 42.9
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 1.6e-14 83.6 156 34.6
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 2.1e-14 83.2 155 37.4
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.7e-14 82.8 140 40.0
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 2.7e-14 82.8 148 38.5
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 3.5e-14 82.4 157 40.8
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 3.5e-14 82.4 130 40.8
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.6e-14 82.0 140 42.9
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 6.0e-14 81.6 159 37.1
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 7.8e-14 81.3 155 36.1
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.8e-14 81.3 141 40.4
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 1.0e-13 80.9 154 37.0
Prupe.1G419200 Prunus persica HOM05D005317 ORTHO05D005146 1.0e-13 80.9 150 34.7
Gohir.D06G022800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-13 80.5 147 34.7
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 1.7e-13 80.1 170 34.7
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 2.3e-13 79.7 156 33.3
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 2.3e-13 79.7 162 34.6
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 2.3e-13 79.7 167 32.9
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 3.0e-13 79.3 143 35.7
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 3.9e-13 79.0 143 41.3
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 3.9e-13 79.0 144 37.5
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 5.1e-13 78.6 144 41.7
Gohir.A06G025700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.1e-13 78.6 148 34.5
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 6.6e-13 78.2 139 38.8
Gorai.010G027400 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.6e-13 78.2 147 34.7
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 6.6e-13 78.2 172 33.1
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 8.7e-13 77.8 153 37.3
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 1.1e-12 77.4 158 33.5
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 1.5e-12 77.0 141 33.3
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 1.9e-12 76.6 159 37.7
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 2.5e-12 76.3 133 36.1
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 2.5e-12 76.3 151 36.4
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 2.5e-12 76.3 144 32.6
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 3.3e-12 75.9 162 34.6
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 3.3e-12 75.9 149 41.6
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 4.3e-12 75.5 118 42.4
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.3e-12 75.5 139 38.8
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 5.6e-12 75.1 174 35.1
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.2e-11 73.9 135 39.3
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 1.6e-11 73.6 153 32.7
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 1.6e-11 73.6 176 35.2
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.6e-11 73.6 176 35.2
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 2.1e-11 73.2 152 32.9
FAN27G2237 Fragaria x ananassa HOM05D030376 ORTHO05D005146 2.1e-11 73.2 179 38.0
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 2.8e-11 72.8 138 37.7
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 2.8e-11 72.8 158 31.0
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 2.8e-11 72.8 136 35.3
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 3.6e-11 72.4 175 34.9
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 3.6e-11 72.4 176 35.2
Atru.chr13.869 Acer truncatum HOM05D011270 ORTHO05D012905 4.7e-11 72.0 156 32.7
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 4.7e-11 72.0 158 34.8
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 4.7e-11 72.0 144 39.6
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 4.7e-11 72.0 175 34.9
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 6.2e-11 71.6 160 36.2
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 1.4e-10 70.5 143 32.9
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 4.0e-10 68.9 142 33.8
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 4.0e-10 68.9 165 35.2
FAN15G0380 Fragaria x ananassa HOM05D030376 ORTHO05D005146 4.0e-10 68.9 180 37.2
MBI16_g06081_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 4.0e-10 68.9 90 50.0
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 9.0e-10 67.8 163 33.7
FAN20G0770 Fragaria x ananassa HOM05D030376 ORTHO05D005146 2.0e-09 66.6 177 37.3
Sc03g0002520 Simmondsia chinensis HOM05D005317 ORTHO05D005146 3.4e-09 65.9 107 38.3
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 3.4e-09 65.9 136 33.1
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.6e-09 64.7 150 38.0
Potri.014G012900 Populus trichocarpa HOM05D005317 ORTHO05D005146 7.6e-09 64.7 168 35.1
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 1.3e-08 63.9 142 33.1
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 1.7e-08 63.5 75 45.3
Gohir.D01G111366 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.9e-08 62.0 69 49.3
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 8.4e-08 61.2 153 36.6
TPR.G13134 Trifolium pratense HOM05D014755 ORTHO05D005146 1.1e-07 60.8 134 35.1
Phvul.009G074100 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 2.4e-07 59.7 137 29.2
CDE04G2604 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 3.2e-07 59.3 146 33.6
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 4.2e-07 58.9 147 33.3
Gohir.D05G215433 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.2e-07 58.9 131 32.8
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 5.4e-07 58.5 60 50.0
arahy.Tifrunner.gnm1.ann1.BL50ZB Arachis hypogaea HOM05D014755 ORTHO05D005146 5.4e-07 58.5 92 34.8
AUR62037856 Chenopodium quinoa HOM05D051035 ORTHO05D005146 7.1e-07 58.2 144 33.3
AUR62041096 Chenopodium quinoa HOM05D051035 ORTHO05D005146 7.1e-07 58.2 144 32.6
Haze_22390 Corylus avellana HOM05D000071 ORTHO05D000029 2.7e-06 56.2 147 29.9
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 3.5e-06 55.8 120 35.8
Glyma.14G089087 Glycine max HOM05D014755 ORTHO05D005146 3.5e-06 55.8 131 33.6
PGSC0003DMG400004968 Solanum tuberosum HOM05D005317 ORTHO05D005146 3.5e-06 55.8 157 33.1
VMungo0647G0350 Vigna mungo HOM05D014755 ORTHO05D005146 3.5e-06 55.8 130 33.8
Phvul.001G030900 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 4.6e-06 55.5 150 32.7
FAN24G2816 Fragaria x ananassa HOM05D030376 ORTHO05D005146 6.0e-06 55.1 118 42.4


User provided reference genes

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