Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 5.5e-98 360.9 175 100.0
Haze_22390 Corylus avellana HOM05D000071 ORTHO05D000029 3.1e-61 238.8 160 78.1
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 2.0e-28 129.8 157 52.2
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.3e-19 99.8 143 39.2
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.9e-19 99.0 143 39.9
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.3e-18 95.9 152 38.2
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.2e-17 94.0 148 38.5
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 2.1e-17 93.2 150 40.7
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 2.8e-17 92.8 145 40.7
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 4.7e-17 92.0 149 38.3
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 8.9e-16 87.8 150 36.0
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.2e-15 87.4 137 40.9
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 5.8e-15 85.1 151 37.7
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 4.9e-14 82.0 148 36.5
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 6.4e-14 81.6 148 37.8
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.9e-13 80.1 144 36.1
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 1.9e-13 80.1 141 43.3
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 2.4e-13 79.7 145 37.2
Gohir.A06G025700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.1e-13 78.2 141 37.6
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 7.1e-13 78.2 148 37.8
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 9.2e-13 77.8 152 37.5
Gohir.D06G022800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.2e-12 77.4 143 36.4
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.1e-12 76.6 133 40.6
Prupe.1G419200 Prunus persica HOM05D005317 ORTHO05D005146 2.1e-12 76.6 156 32.7
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 2.7e-12 76.3 137 38.0
Gorai.010G027400 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.5e-12 75.9 143 36.4
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 1.3e-11 73.9 147 34.7
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-11 73.9 140 38.6
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 1.7e-11 73.6 156 37.8
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 1.7e-11 73.6 150 34.7
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.7e-11 73.6 133 39.8
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 1.7e-11 73.6 155 34.8
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 1.7e-11 73.6 149 34.2
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 2.3e-11 73.2 140 35.0
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 2.3e-11 73.2 149 33.6
Potri.014G012900 Populus trichocarpa HOM05D005317 ORTHO05D005146 3.0e-11 72.8 154 35.7
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.9e-11 72.4 136 36.0
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 5.1e-11 72.0 144 35.4
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 8.6e-11 71.2 144 34.0
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.1e-10 70.9 152 39.5
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.1e-10 70.9 148 34.5
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-10 70.5 143 37.1
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 1.9e-10 70.1 151 31.8
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.5e-10 69.7 141 37.6
Atru.chr13.869 Acer truncatum HOM05D011270 ORTHO05D012905 3.3e-10 69.3 152 32.2
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 3.3e-10 69.3 158 34.8
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 3.3e-10 69.3 148 33.8
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 4.3e-10 68.9 142 33.8
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 4.3e-10 68.9 142 29.6
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 7.3e-10 68.2 142 30.3
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 7.3e-10 68.2 156 32.7
CDE04G2604 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 9.6e-10 67.8 145 36.6
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 9.6e-10 67.8 153 34.6
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 1.2e-09 67.4 160 33.1
Glyma.17G232800 Glycine max HOM05D014755 ORTHO05D005146 1.2e-09 67.4 144 35.4
Gohir.D05G215433 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.2e-09 67.4 133 38.3
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 1.2e-09 67.4 110 40.0
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 1.2e-09 67.4 151 32.5
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.6e-09 67.0 139 34.5
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.6e-09 67.0 139 34.5
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 2.1e-09 66.6 137 32.8
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 2.1e-09 66.6 158 31.6
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 2.8e-09 66.2 139 30.2
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 3.6e-09 65.9 147 31.3
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 4.7e-09 65.5 140 34.3
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 8.1e-09 64.7 149 30.9
Phvul.001G030900 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 8.1e-09 64.7 130 34.6
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 1.4e-08 63.9 142 31.7
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 1.4e-08 63.9 143 29.4
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 1.4e-08 63.9 139 30.9
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 1.8e-08 63.5 138 36.2
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 2.4e-08 63.2 165 30.3
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 2.4e-08 63.2 146 32.9
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.4e-08 63.2 150 32.0
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 2.4e-08 63.2 158 32.9
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 2.4e-08 63.2 154 30.5
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 2.4e-08 63.2 140 32.1
Glyma.14G089087 Glycine max HOM05D014755 ORTHO05D005146 3.1e-08 62.8 143 34.3
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 3.1e-08 62.8 137 33.6
Gohir.A05G212200 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.0e-08 62.4 132 39.4
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 8.9e-08 61.2 136 37.5
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 1.2e-07 60.8 141 33.3
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.2e-07 60.8 153 29.4
FAN15G3562 Fragaria x ananassa HOM05D025097 ORTHO05D025563 1.2e-07 60.8 164 30.5
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 1.2e-07 60.8 158 31.6
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 1.2e-07 60.8 136 32.4
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 1.5e-07 60.5 169 32.0
CARHR010290 Cardamine hirsuta HOM05D011270 ORTHO05D012905 1.5e-07 60.5 166 32.5
FAN20G0770 Fragaria x ananassa HOM05D030376 ORTHO05D005146 1.5e-07 60.5 158 32.3
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 1.5e-07 60.5 151 31.8
FAN15G0380 Fragaria x ananassa HOM05D030376 ORTHO05D005146 2.0e-07 60.1 158 32.9
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 2.0e-07 60.1 139 30.9
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 2.0e-07 60.1 138 32.6
FAN27G2237 Fragaria x ananassa HOM05D030376 ORTHO05D005146 2.6e-07 59.7 156 32.1
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 3.4e-07 59.3 93 39.8
BcaC07g38545 Brassica carinata HOM05D011270 ORTHO05D012905 3.4e-07 59.3 160 35.6
BolC8t48985H Brassica oleracea HOM05D011270 ORTHO05D012905 3.4e-07 59.3 160 35.6
Carub.0001s0960 Capsella rubella HOM05D011270 ORTHO05D012905 3.4e-07 59.3 158 29.1
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 3.4e-07 59.3 174 30.5
VMungo0647G0350 Vigna mungo HOM05D014755 ORTHO05D005146 3.4e-07 59.3 125 32.0
C08p13500 Brassica napus HOM05D011270 ORTHO05D012905 4.4e-07 58.9 158 33.5
Migut.H00325 Erythranthe guttata HOM05D005317 ORTHO05D005146 5.8e-07 58.5 148 31.8
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.8e-07 58.5 159 28.9
RcHm_v2.0_Chr6g0310031 Rosa chinensis HOM05D025097 ORTHO05D025563 5.8e-07 58.5 171 28.1
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 7.6e-07 58.2 111 36.0
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 7.6e-07 58.2 139 30.9
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.6e-07 58.2 150 30.7
A08p34120 Brassica napus HOM05D011270 ORTHO05D012905 9.9e-07 57.8 158 33.5
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 9.9e-07 57.8 150 30.0
Glyma.06G048800 Glycine max HOM05D014755 ORTHO05D005146 9.9e-07 57.8 148 30.4
Sp1g08810 Schrenkiella parvula HOM05D001270 ORTHO05D001099 9.9e-07 57.8 127 32.3
arahy.Tifrunner.gnm1.ann1.BL50ZB Arachis hypogaea HOM05D014755 ORTHO05D005146 1.3e-06 57.4 101 38.6
BcaC07g38551 Brassica carinata HOM05D011270 ORTHO05D012905 1.3e-06 57.4 156 34.0
BolC8t48976H Brassica oleracea HOM05D011270 ORTHO05D012905 1.3e-06 57.4 156 34.0
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 1.7e-06 57.0 144 31.2
TPR.G13134 Trifolium pratense HOM05D014755 ORTHO05D005146 1.7e-06 57.0 142 33.8
A06p06850 Brassica napus HOM05D011270 ORTHO05D012905 2.2e-06 56.6 157 33.1
BraA06t23899Z Brassica rapa HOM05D011270 ORTHO05D012905 2.2e-06 56.6 157 33.1
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 2.9e-06 56.2 148 32.4
BcaC07g38553 Brassica carinata HOM05D011270 ORTHO05D012905 2.9e-06 56.2 160 34.4
BolC5t29583H Brassica oleracea HOM05D011270 ORTHO05D012905 2.9e-06 56.2 158 31.6
Gohir.D01G111366 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.9e-06 56.2 79 40.5
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.9e-06 56.2 154 27.9
BraA08t35324Z Brassica rapa HOM05D011270 ORTHO05D012905 3.8e-06 55.8 159 33.3
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.8e-06 55.8 154 26.6
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 4.9e-06 55.5 141 29.8
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 4.9e-06 55.5 156 29.5
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 4.9e-06 55.5 133 34.6


User provided reference genes

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