Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 7.2e-113 410.6 210 100.0
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 1.4e-103 379.8 238 85.3
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 5.0e-90 334.7 208 83.2
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 2.5e-89 332.4 219 78.5
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 8.0e-88 327.4 213 77.0
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 5.2e-87 324.7 219 76.3
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 1.5e-86 323.2 219 75.3
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 7.5e-86 320.9 219 75.3
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 1.7e-85 319.7 218 75.2
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 2.2e-85 319.3 216 76.4
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 3.7e-85 318.5 214 75.7
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 3.7e-85 318.5 204 77.5
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 4.9e-85 318.2 218 75.2
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 8.3e-85 317.4 219 75.8
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 4.1e-84 315.1 218 74.8
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 5.4e-84 314.7 213 74.6
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 7.0e-84 314.3 214 74.8
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 1.2e-83 313.5 217 75.6
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 2.7e-83 312.4 218 75.2
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 3.5e-83 312.0 210 78.6
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 6.0e-83 311.2 215 74.9
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 1.0e-82 310.5 213 74.2
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 2.3e-82 309.3 216 75.5
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 5.0e-82 308.1 213 73.7
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 6.6e-82 307.8 213 73.7
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 1.1e-81 307.0 208 76.0
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 1.1e-81 307.0 209 75.1
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 1.1e-81 307.0 207 75.4
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 4.3e-81 305.1 218 72.9
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 4.3e-81 305.1 228 71.1
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 5.6e-81 304.7 217 72.8
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 5.6e-81 304.7 212 75.0
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 7.3e-81 304.3 212 74.1
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 9.5e-81 303.9 204 76.5
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 2.1e-80 302.8 212 74.5
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 2.8e-80 302.4 214 73.4
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 4.7e-80 301.6 221 73.3
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 1.4e-79 300.1 212 74.1
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 1.4e-79 300.1 241 68.0
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 1.8e-79 299.7 217 71.4
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 5.2e-79 298.1 213 74.2
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 2.0e-78 296.2 215 74.0
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 4.4e-78 295.0 217 71.9
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 4.4e-78 295.0 207 71.5
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 4.4e-78 295.0 222 72.5
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 7.5e-78 294.3 220 70.9
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 7.5e-78 294.3 219 71.2
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 9.8e-78 293.9 220 70.9
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 1.7e-77 293.1 222 68.9
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 2.2e-77 292.7 213 71.8
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 4.9e-77 291.6 207 71.5
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 1.9e-76 289.7 207 70.5
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 7.1e-76 287.7 221 68.8
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 7.1e-76 287.7 214 69.6
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 9.2e-76 287.3 208 70.2
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 2.7e-75 285.8 211 68.7
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 2.7e-75 285.8 211 69.2
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 1.3e-74 283.5 218 69.7
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 3.9e-74 282.0 214 68.2
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 4.3e-73 278.5 219 69.4
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 7.3e-73 277.7 191 75.4
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 2.8e-72 275.8 210 67.6
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 3.6e-72 275.4 208 69.7
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 1.4e-71 273.5 221 66.5
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 2.3e-71 272.7 212 66.5
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 3.1e-71 272.3 217 65.4
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 3.1e-71 272.3 217 68.2
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 4.0e-71 271.9 167 81.4
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 8.9e-71 270.8 167 81.4
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 1.2e-70 270.4 225 64.4
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 2.0e-70 269.6 212 64.6
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 3.4e-70 268.9 215 68.8
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 5.8e-70 268.1 167 80.2
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 1.3e-69 266.9 211 68.7
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 1.3e-69 266.9 206 68.9
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 5.4e-68 261.5 183 72.7
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 5.4e-68 261.5 167 77.8
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 1.0e-66 257.3 167 73.7
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 2.3e-66 256.1 193 67.9
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 7.3e-65 251.1 155 81.9
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 1.2e-64 250.4 170 73.5
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 4.7e-64 248.4 208 60.6
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 4.3e-57 225.3 149 79.9
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 9.6e-57 224.2 212 57.5
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 9.6e-57 224.2 228 55.3
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 5.3e-55 218.4 138 75.4
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 1.9e-52 209.9 140 72.9
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 2.4e-52 209.5 192 56.2
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 7.3e-49 198.0 136 78.7
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 1.7e-45 186.8 217 51.2
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 1.0e-42 177.6 136 64.7
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 8.7e-42 174.5 140 70.0
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 1.1e-41 174.1 140 69.3
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 4.6e-27 125.6 95 71.6
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.5e-25 120.6 76 84.2
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.5e-25 120.6 76 84.2
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 1.4e-20 104.0 72 75.0
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 1.4e-20 104.0 206 35.9
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 6.1e-19 98.6 59 79.7
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 2.6e-14 83.2 153 39.2
Sc15g0005340 Simmondsia chinensis HOM05D007406 ORTHO05D009434 2.6e-14 83.2 70 65.7
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 1.7e-13 80.5 73 42.5
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 2.7e-11 73.2 165 35.8


User provided reference genes

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