Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 5.3e-226 787.3 390 100.0
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 4.3e-204 714.5 439 84.1
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 2.6e-180 635.6 402 80.8
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 4.0e-173 611.7 401 76.8
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 6.3e-171 604.4 401 76.1
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 5.0e-168 594.7 403 74.9
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 8.5e-168 594.0 401 75.6
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 1.1e-167 593.6 403 74.9
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 3.6e-166 588.6 400 75.2
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 8.0e-166 587.4 406 74.1
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 1.4e-165 586.6 406 74.6
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 1.2e-164 583.6 402 73.1
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 2.6e-164 582.4 410 72.9
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 2.6e-164 582.4 410 72.9
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 3.4e-164 582.0 408 73.5
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.7e-163 579.7 402 72.1
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 6.3e-163 577.8 400 74.5
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.4e-162 576.6 401 74.1
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 1.8e-162 576.2 401 74.1
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 7.7e-161 570.9 402 73.6
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 7.7e-161 570.9 407 72.7
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.3e-160 569.3 406 71.7
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 2.9e-160 568.9 418 71.5
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.9e-159 566.2 404 72.0
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 1.9e-159 566.2 406 71.2
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 2.5e-159 565.8 392 74.2
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 2.1e-158 562.8 405 71.4
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.6e-158 562.0 428 69.4
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 1.0e-157 560.5 405 71.9
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 1.4e-157 560.1 405 71.6
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.4e-157 560.1 404 70.0
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 4.0e-157 558.5 398 71.4
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 5.2e-157 558.1 420 68.8
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 1.2e-156 557.0 405 70.4
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 7.5e-156 554.3 410 70.0
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 7.5e-156 554.3 399 71.9
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 7.5e-156 554.3 406 70.9
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 7.5e-156 554.3 405 69.4
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 9.8e-156 553.9 406 70.9
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 1.3e-155 553.5 401 70.3
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 1.3e-155 553.5 403 71.0
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.7e-155 553.1 404 70.0
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 4.9e-155 551.6 398 70.6
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 8.3e-155 550.8 406 68.7
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 1.1e-154 550.4 406 69.7
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 2.4e-154 549.3 370 76.8
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 2.4e-154 549.3 393 71.8
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 4.1e-154 548.5 401 72.3
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 4.1e-154 548.5 396 71.7
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 1.2e-153 547.0 405 70.1
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 1.2e-153 547.0 403 72.0
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 3.5e-153 545.4 423 67.8
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 4.6e-153 545.0 406 69.0
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 5.9e-153 544.7 406 67.2
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 1.7e-152 543.1 351 77.5
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 5.0e-152 541.6 401 69.3
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 1.5e-151 540.0 400 70.8
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 4.3e-151 538.5 371 74.4
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 5.6e-151 538.1 404 70.0
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.6e-150 536.6 396 68.7
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 1.6e-150 536.6 428 66.1
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 2.8e-150 535.8 409 67.7
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 6.1e-150 534.6 406 67.2
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 8.0e-150 534.3 338 77.5
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 1.0e-149 533.9 409 66.3
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.0e-149 533.9 410 67.8
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 3.1e-149 532.3 408 67.4
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 4.0e-149 531.9 400 69.0
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 1.5e-148 530.0 348 75.0
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 1.5e-148 530.0 406 66.5
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 2.0e-148 529.6 406 66.7
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 4.4e-148 528.5 366 71.6
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 4.4e-148 528.5 402 68.9
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 7.5e-148 527.7 410 66.1
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 9.8e-148 527.3 409 65.8
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 1.3e-147 526.9 412 66.5
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 1.3e-147 526.9 405 68.4
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 1.7e-147 526.6 407 66.6
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 2.2e-147 526.2 420 65.7
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 2.2e-147 526.2 342 75.7
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 3.7e-147 525.4 353 72.5
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 4.9e-147 525.0 406 65.5
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 4.9e-147 525.0 410 66.3
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 6.4e-147 524.6 399 68.9
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 6.4e-147 524.6 400 67.5
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 8.3e-147 524.2 366 70.8
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 8.3e-147 524.2 411 66.4
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 8.3e-147 524.2 401 68.6
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 1.9e-146 523.1 413 66.3
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 2.4e-146 522.7 405 68.9
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 1.6e-145 520.0 396 69.2
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 2.3e-144 516.2 410 64.9
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 2.5e-143 512.7 366 73.8
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 9.5e-143 510.8 401 66.1
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 9.5e-143 510.8 412 67.7
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 9.5e-143 510.8 412 67.7
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 4.7e-142 508.4 335 72.5
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 6.2e-142 508.1 412 67.5
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 2.3e-141 506.1 347 71.2
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 2.6e-140 502.7 330 73.0
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 4.4e-140 501.9 404 64.6
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 1.3e-139 500.4 383 65.8
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 3.7e-139 498.8 382 68.3
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 4.9e-139 498.4 405 63.5
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 3.2e-138 495.7 427 63.2
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 5.4e-138 495.0 335 69.9
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 1.0e-136 490.7 298 80.9
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 1.3e-136 490.3 399 64.2
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 9.5e-135 484.2 406 62.3
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 9.5e-135 484.2 400 64.0
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 2.8e-134 482.6 380 65.3
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 4.7e-134 481.9 402 65.2
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 9.9e-132 474.2 368 65.2
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 2.2e-131 473.0 368 65.2
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 9.2e-130 467.6 283 80.6
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 3.0e-128 462.6 358 64.5
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 1.9e-127 459.9 409 60.4
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 8.1e-126 454.5 298 73.8
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 2.9e-123 446.0 328 65.2
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 8.4e-123 444.5 417 58.5
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 1.9e-122 443.4 338 65.4
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 3.0e-120 436.0 368 59.2
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 1.6e-118 430.3 328 64.0
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-117 427.2 279 74.2
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 5.3e-117 425.2 332 67.8
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 4.2e-114 415.6 337 63.8
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.3e-112 410.6 334 59.9
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 3.0e-112 409.5 251 78.9
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 1.3e-104 384.0 374 57.0
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 1.0e-99 367.9 331 53.5
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 2.2e-99 366.7 331 61.9
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.3e-96 356.7 308 63.6
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 1.5e-92 344.0 253 70.4
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 1.3e-91 340.9 318 53.5
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 1.9e-90 337.0 291 60.8
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 4.2e-90 335.9 246 70.7
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 1.0e-88 331.3 294 55.8
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 6.5e-75 285.4 162 83.3
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 1.4e-61 241.1 405 40.5
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 4.5e-60 236.1 157 73.2
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 1.3e-59 234.6 275 49.8
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.6e-55 220.3 266 49.2
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 2.5e-50 203.8 224 51.8
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 5.5e-50 202.6 318 42.1
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 1.6e-49 201.1 300 43.3
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 5.2e-48 196.1 178 62.4
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 3.4e-47 193.4 143 65.7
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 7.0e-45 185.7 178 61.2
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 7.0e-45 185.7 178 61.2
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 2.3e-32 144.1 116 63.8
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 7.5e-31 139.0 106 66.0
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 3.2e-29 133.7 104 63.5
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 4.3e-26 123.2 220 36.8
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-18 98.6 153 42.5
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-18 98.6 153 42.5
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 8.1e-17 92.4 51 76.5
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 8.1e-17 92.4 51 76.5
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 2.2e-14 84.3 51 78.4
Psat0s4321g0080 Pisum sativum HOM05D003122 ORTHO05D012218 2.8e-09 67.4 104 45.2
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 3.4e-07 60.5 47 57.4
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 5.8e-07 59.7 179 31.8
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 9.9e-07 58.9 44 65.9
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-06 58.2 39 69.2
arahy.Tifrunner.gnm1.ann1.03U3FR Arachis hypogaea HOM05D036434 ORTHO05D085949 2.2e-06 57.8 56 53.6
arahy.Tifrunner.gnm1.ann1.E7EHDM Arachis hypogaea HOM05D036434 ORTHO05D085916 2.2e-06 57.8 56 53.6


User provided reference genes

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