Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013642 Carpinus fangiana HOM05D006862 ORTHO05D008726 2.5e-231 805.1 399 100.0
QL12p036953 Quercus lobata HOM05D006862 ORTHO05D008726 5.2e-104 382.1 212 88.7
CiPaw.08G045700 Carya illinoinensis HOM05D006862 ORTHO05D008726 1.9e-101 373.6 221 84.6
TAR381G1571 Trochodendron aralioides HOM05D006862 ORTHO05D008726 4.1e-101 372.5 212 86.3
Dinv32268 Davidia involucrata HOM05D006862 ORTHO05D005283 1.2e-97 360.9 212 82.1
Actinidia33490 Actinidia chinensis HOM05D006862 ORTHO05D008726 3.6e-97 359.4 212 82.1
Potri.005G164300 Populus trichocarpa HOM05D006862 ORTHO05D008726 4.7e-97 359.0 213 82.2
Sabra05G0123800 Salix brachista HOM05D006862 ORTHO05D008726 2.3e-96 356.7 224 79.9
CSS0002443 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 1.5e-95 354.0 212 80.7
Duzib093G2032 Durio zibethinus HOM05D006862 ORTHO05D008726 3.4e-95 352.8 221 75.6
Lj7A540T61 Lonicera japonica HOM05D006862 ORTHO05D008726 5.8e-95 352.1 219 76.7
Thecc.08G105700 Theobroma cacao HOM05D006862 ORTHO05D008726 1.3e-94 350.9 212 80.2
Hma1.2p1_0341F.1_g130400 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 1.7e-94 350.5 212 78.3
CSS0011508 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 2.2e-94 350.1 212 80.2
GSVIVG01020916001 Vitis vinifera HOM05D006862 ORTHO05D008726 2.2e-94 350.1 229 76.0
Manes.18G066800 Manihot esculenta HOM05D006862 ORTHO05D008726 1.9e-93 347.1 212 80.2
vmacro13466 Vaccinium macrocarpon HOM05D006862 ORTHO05D008726 1.9e-93 347.1 221 76.9
Gorai.002G140500 Gossypium raimondii HOM05D006862 ORTHO05D008726 2.4e-93 346.7 221 75.6
TWI56G0923 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 2.4e-93 346.7 221 76.5
Gohir.A01G127200 Gossypium hirsutum HOM05D006862 ORTHO05D008726 4.1e-93 345.9 221 75.1
TWI23G1270 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 9.2e-93 344.7 221 76.0
Sed0019597 Sechium edule HOM05D006862 ORTHO05D008726 1.2e-92 344.4 212 75.0
Nn1g05382 Nelumbo nucifera HOM05D006862 ORTHO05D008726 1.6e-92 344.0 215 77.7
CANSAT01G2845 Cannabis sativa HOM05D006862 ORTHO05D008726 2.7e-92 343.2 211 77.7
ClCG08G011130 Citrullus lanatus HOM05D006862 ORTHO05D008726 3.5e-92 342.8 215 75.3
Glyma.15G146200 Glycine max HOM05D006862 ORTHO05D008726 7.8e-92 341.7 212 77.8
Gohir.D01G114900 Gossypium hirsutum HOM05D006862 ORTHO05D008726 1.0e-91 341.3 221 75.1
Ca_01890_v3 Cicer arietinum L. HOM05D006862 ORTHO05D008726 1.5e-90 337.4 214 75.2
MELO3C011029.2 Cucumis melo HOM05D006862 ORTHO05D008726 1.5e-90 337.4 212 75.5
CsaV3_2G029710 Cucumis sativus L. HOM05D006862 ORTHO05D008726 1.5e-90 337.4 212 75.5
Glyma.09G040700 Glycine max HOM05D006862 ORTHO05D008726 1.5e-90 337.4 212 75.9
Prupe.1G518300 Prunus persica HOM05D006862 ORTHO05D008726 7.3e-90 335.1 212 76.4
Cpa.g.sc36.141 Carica papaya HOM05D006862 ORTHO05D008726 2.1e-89 333.6 210 77.1
DCAR_031876 Daucus carota HOM05D006862 ORTHO05D008726 8.1e-89 331.6 210 75.7
Ciclev10002323m.g Citrus clementina HOM05D006862 ORTHO05D008726 1.1e-88 331.3 225 72.0
RcHm_v2.0_Chr7g0238691 Rosa chinensis HOM05D006862 ORTHO05D008726 1.1e-88 331.3 213 75.6
FAN04G2864 Fragaria x ananassa HOM05D006862 ORTHO05D008726 1.4e-88 330.9 213 75.1
EL10Ac1g01209 Beta vulgaris HOM05D006862 ORTHO05D008726 2.4e-88 330.1 212 72.6
FAN13G0737 Fragaria x ananassa HOM05D006862 ORTHO05D008726 3.1e-88 329.7 213 75.1
Sc23g0003870 Simmondsia chinensis HOM05D006862 ORTHO05D008726 4.0e-88 329.3 221 72.4
AUR62027770 Chenopodium quinoa HOM05D006862 ORTHO05D008726 5.2e-88 328.9 212 72.6
VMungo1309G2304 Vigna mungo HOM05D006862 ORTHO05D008726 6.8e-88 328.6 214 74.8
COL.COLO4_16384 Corchorus olitorius HOM05D006862 ORTHO05D008726 1.2e-87 327.8 200 78.5
Aqoxy2G03696 Aquilegia oxysepala HOM05D006862 ORTHO05D008726 2.6e-87 326.6 223 70.4
Eucgr.F00331 Eucalyptus grandis HOM05D006862 ORTHO05D008726 5.8e-87 325.5 212 74.5
FAN18G1242 Fragaria x ananassa HOM05D006862 ORTHO05D008726 2.9e-86 323.2 213 73.7
FvH4_5g37140 Fragaria vesca HOM05D006862 ORTHO05D008726 4.9e-86 322.4 213 73.2
TPR.G28474 Trifolium pratense HOM05D006862 ORTHO05D008726 4.9e-86 322.4 214 72.9
Psat1g156880 Pisum sativum HOM05D006862 ORTHO05D008726 6.4e-86 322.0 214 73.4
Hund16900 Selenicereus undatus HOM05D006862 ORTHO05D008726 1.1e-85 321.2 199 77.9
Medtr2g035310 Medicago truncatula HOM05D006862 ORTHO05D008726 3.2e-85 319.7 212 72.2
MD08G1184100 Malus domestica HOM05D006862 ORTHO05D008726 4.2e-85 319.3 225 69.3
MBI05_g39046_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 5.4e-85 318.9 212 75.0
Oeu009615.1 Olea europaea HOM05D006862 ORTHO05D008726 1.2e-84 317.8 214 72.4
PSO447G0083 Papaver somniferum HOM05D006862 ORTHO05D008726 1.6e-84 317.4 210 72.4
MBI05_g44690_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 2.1e-84 317.0 212 74.5
Nitab4.5_0003428g0010 Nicotiana tabacum HOM05D006862 ORTHO05D008726 6.0e-84 315.5 213 73.2
Atru.chr13.1175 Acer truncatum HOM05D006862 ORTHO05D008726 1.3e-83 314.3 216 71.8
Lalb_Chr18g0059041 Lupinus albus HOM05D006862 ORTHO05D008726 1.7e-83 313.9 212 71.7
Nitab4.5_0000210g0120 Nicotiana tabacum HOM05D006862 ORTHO05D008726 1.7e-83 313.9 213 72.8
Phvul.009G253100 Phaseolus vulgaris HOM05D006862 ORTHO05D008726 1.7e-83 313.9 212 71.7
PGR042G4010 Punica granatum HOM05D006862 ORTHO05D008726 3.0e-83 313.2 212 70.8
Ah.12g052780 Amaranthus hybridus HOM05D006862 ORTHO05D008726 5.1e-83 312.4 268 59.0
arahy.Tifrunner.gnm1.ann1.F2RQ7H Arachis hypogaea HOM05D006862 ORTHO05D008726 1.1e-82 311.2 214 69.6
THA.LOC104806470 Tarenaya hassleriana HOM05D006862 ORTHO05D008726 1.9e-82 310.5 213 70.9
arahy.Tifrunner.gnm1.ann1.ZLG2GC Arachis hypogaea HOM05D006862 ORTHO05D008726 4.3e-82 309.3 212 69.3
MSTRG.28166 Avicennia marina HOM05D006862 ORTHO05D008726 4.3e-82 309.3 213 69.5
PSO210G6562 Papaver somniferum HOM05D006862 ORTHO05D008726 2.1e-81 307.0 214 69.6
Sopen10g008800 Solanum pennellii HOM05D006862 ORTHO05D008726 1.8e-80 303.9 213 69.0
Sp1g29820 Schrenkiella parvula HOM05D006862 ORTHO05D008726 6.9e-80 302.0 213 68.5
Thhalv10001858m.g Eutrema salsugineum HOM05D006862 ORTHO05D008726 1.2e-79 301.2 222 65.8
HPP92_002325 Vanilla planifolia HOM05D006862 ORTHO05D008726 2.0e-79 300.4 210 67.1
BcaB04g17850 Brassica carinata HOM05D006862 ORTHO05D008726 2.6e-79 300.1 213 70.4
BcaC07g37529 Brassica carinata HOM05D006862 ORTHO05D008726 5.8e-79 298.9 213 70.4
BolC8t47847H Brassica oleracea HOM05D006862 ORTHO05D008726 5.8e-79 298.9 213 70.4
Aa31LG6G8550 Aethionema arabicum HOM05D006862 ORTHO05D008726 1.7e-78 297.4 213 68.5
Carub.0001s3270 Capsella rubella HOM05D006862 ORTHO05D008726 1.7e-78 297.4 222 64.9
CAN.G1432.28 Capsicum annuum HOM05D006862 ORTHO05D008726 1.7e-78 297.4 213 69.5
CDE10G0559 Ceratophyllum demersum HOM05D006862 ORTHO05D008726 1.7e-78 297.4 223 64.1
BraA08t32838Z Brassica rapa HOM05D006862 ORTHO05D008726 2.2e-78 297.0 213 69.5
A08p08160 Brassica napus HOM05D006862 ORTHO05D008726 4.9e-78 295.8 213 69.0
Cc02_g24490 Coffea canephora HOM05D006862 ORTHO05D008726 1.1e-77 294.7 216 69.9
SalBow5G3922 Salvia bowleyana HOM05D006862 ORTHO05D008726 1.4e-77 294.3 213 65.7
Migut.N01765 Erythranthe guttata HOM05D006862 ORTHO05D008726 3.5e-76 289.7 216 62.5
Os07g0151300 Oryza sativa ssp. japonica HOM05D006862 ORTHO05D008726 4.6e-76 289.3 213 65.7
AL1G49800 Arabidopsis lyrata HOM05D006862 ORTHO05D008726 6.0e-76 288.9 216 66.7
AT1G34770 Arabidopsis thaliana HOM05D006862 ORTHO05D008726 1.7e-75 287.3 213 65.7
CARHR034040 Cardamine hirsuta HOM05D006862 ORTHO05D008726 1.7e-75 287.3 214 65.0
SGA_v2.0_scaffold43G16518 Striga asiatica HOM05D006862 ORTHO05D008726 1.7e-75 287.3 213 64.3
ECA236G4229 Erigeron canadensis HOM05D006862 ORTHO05D008726 2.5e-74 283.5 221 63.8
Lsat_1_v5_gn_7_11121 Lactuca sativa HOM05D001703 ORTHO05D005708 2.8e-73 280.0 217 62.2
Zm00001eb300080 Zea mays HOM05D006862 ORTHO05D008726 2.8e-73 280.0 213 62.9
AUR62018925 Chenopodium quinoa HOM05D006862 ORTHO05D008726 2.7e-68 263.5 185 66.5
Haze_22271 Corylus avellana HOM05D006862 ORTHO05D008726 1.1e-66 258.1 138 94.2
RcHm_v2.0_Chr7g0243981 Rosa chinensis HOM05D006862 ORTHO05D008726 8.1e-65 251.9 180 72.2
unitig_22.g6705 Utricularia gibba HOM05D006862 ORTHO05D008726 1.0e-62 245.0 239 52.3
Hma1.2p1_0341F.1_g130390 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 4.9e-62 242.7 147 76.2
ATR0782G115 Amborella trichopoda HOM05D006862 ORTHO05D008726 5.7e-58 229.2 211 56.4
Psat1g146360 Pisum sativum HOM05D006862 ORTHO05D008726 1.3e-51 208.0 149 68.5
Pp3c15_18480 Physcomitrium patens HOM05D006862 ORTHO05D008726 9.0e-48 195.3 209 45.5
Solyc10g018870.2 Solanum lycopersicum HOM05D006862 ORTHO05D008726 2.5e-45 187.2 128 65.6
HanXRQChr04g0123461 Helianthus annuus HOM05D006862 ORTHO05D008726 2.7e-44 183.7 148 62.8
Ciclev10006681m.g Citrus clementina HOM05D006862 ORTHO05D008726 4.6e-44 183.0 198 51.5
AagrBONN_evm.TU.Sc2ySwM_344.2907 Anthoceros agrestis HOM05D006862 ORTHO05D008726 3.0e-43 180.3 210 45.2
Mapoly0069s0077 Marchantia polymorpha HOM05D006862 ORTHO05D008726 8.2e-41 172.2 242 38.4
CBR_g23028 Chara braunii HOM05D006862 ORTHO05D008726 1.2e-39 168.3 213 40.8
Psat7g091920 Pisum sativum HOM05D006862 ORTHO05D008726 3.2e-37 160.2 118 66.9
CBR_g8943 Chara braunii HOM05D006862 ORTHO05D008726 4.2e-37 159.8 212 39.2
MCO09G856 Micromonas commoda HOM05D006862 ORTHO05D008726 2.1e-36 157.5 216 38.9
Peaxi162Scf00001g05620 Petunia axillaris HOM05D006862 ORTHO05D008726 9.7e-34 148.7 158 50.6
Lsat_1_v5_gn_4_149521 Lactuca sativa HOM05D006862 ORTHO05D008726 1.7e-30 137.9 109 62.4
FAN08G1952 Fragaria x ananassa HOM05D006862 ORTHO05D008726 2.1e-28 131.0 78 80.8
SalBow4G2162 Salvia bowleyana HOM05D006862 ORTHO05D008726 1.7e-22 111.3 93 55.9
PRCOL_00000002 Prasinoderma coloniale HOM05D006862 ORTHO05D008726 3.6e-20 103.6 202 34.2
Lsat_1_v5_gn_2_48340 Lactuca sativa HOM05D006862 ORTHO05D008726 8.5e-14 82.4 88 52.3
Lsat_1_v5_gn_6_41620 Lactuca sativa HOM05D006862 ORTHO05D008726 8.5e-14 82.4 88 52.3
MD15G1370600 Malus domestica HOM05D006862 ORTHO05D008726 2.2e-09 67.8 43 69.8
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 1.1e-08 65.5 48 66.7
Rhsim07G0033200 Rhododendron simsii HOM05D006089 ORTHO05D007345 7.7e-07 59.3 32 78.1


User provided reference genes

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