Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 9.8e-210 733.4 422 100.0
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 1.3e-145 520.4 342 90.4
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 8.8e-126 454.5 345 78.3
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 4.4e-117 425.6 355 69.6
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 5.2e-110 402.1 347 71.5
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 6.3e-108 395.2 350 65.7
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 7.0e-107 391.7 355 62.8
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.6e-106 390.6 349 65.0
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 4.2e-104 382.5 353 67.4
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 4.2e-104 382.5 369 68.8
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 4.7e-103 379.0 360 68.1
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 6.1e-103 378.6 356 66.9
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 8.8e-102 374.8 352 67.3
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 4.4e-101 372.5 353 61.5
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 5.7e-101 372.1 353 63.2
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 5.7e-101 372.1 352 59.7
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 9.7e-101 371.3 354 64.1
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.8e-100 369.8 352 61.6
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 8.2e-100 368.2 352 62.8
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 4.1e-99 365.9 349 68.5
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 7.0e-99 365.2 363 66.7
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 7.0e-99 365.2 348 68.7
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 1.0e-97 361.3 351 68.4
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 2.9e-97 359.8 351 65.0
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 5.0e-97 359.0 351 64.1
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 6.5e-97 358.6 364 62.4
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 6.5e-97 358.6 374 60.7
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 7.2e-96 355.1 361 62.3
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 1.6e-95 354.0 367 63.5
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 2.7e-95 353.2 355 65.1
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 4.7e-95 352.4 356 60.1
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 4.7e-95 352.4 341 61.6
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 3.0e-94 349.7 351 63.2
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 2.0e-93 347.1 354 60.7
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 3.4e-93 346.3 351 62.7
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 3.7e-92 342.8 357 61.9
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 8.3e-92 341.7 363 59.8
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 1.1e-91 341.3 341 62.8
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 3.1e-91 339.7 344 64.2
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 1.2e-90 337.8 362 61.3
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 1.6e-90 337.4 369 60.4
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 7.7e-90 335.1 359 60.7
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 2.3e-89 333.6 357 61.3
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.5e-88 330.9 351 56.1
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 1.5e-88 330.9 361 58.7
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 1.9e-88 330.5 347 57.3
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 7.2e-88 328.6 362 65.5
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 1.2e-87 327.8 357 57.4
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 1.5e-85 320.9 358 56.4
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 4.4e-85 319.3 365 54.0
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 3.7e-84 316.2 352 52.8
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 3.1e-83 313.2 366 60.9
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 4.1e-83 312.8 360 56.7
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 2.5e-80 303.5 352 56.8
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 3.3e-80 303.1 361 55.4
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 4.3e-80 302.8 353 62.3
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 1.4e-78 297.7 270 63.0
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 2.3e-78 297.0 280 63.9
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 1.5e-77 294.3 356 54.2
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 2.6e-77 293.5 351 55.6
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 2.6e-77 293.5 372 54.8
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 6.4e-76 288.9 348 52.9
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 1.4e-75 287.7 348 58.0
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 7.0e-75 285.4 335 58.2
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 9.2e-75 285.0 339 54.0
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 1.2e-74 284.6 336 55.1
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 3.5e-74 283.1 335 53.4
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 6.0e-74 282.3 352 50.0
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 1.0e-73 281.6 346 55.2
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.3e-73 281.2 346 54.9
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 1.3e-73 281.2 370 55.1
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 1.7e-73 280.8 371 55.8
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 5.0e-73 279.3 349 55.3
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 5.0e-73 279.3 356 54.5
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.5e-72 277.7 356 49.7
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 4.3e-72 276.2 342 53.5
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 1.1e-70 271.6 343 51.9
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 8.9e-70 268.5 342 50.3
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 1.2e-69 268.1 342 49.1
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 1.5e-69 267.7 349 49.9
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 1.5e-69 267.7 349 49.9
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 1.5e-69 267.7 349 49.9
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 2.6e-69 266.9 347 51.3
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 3.4e-69 266.5 346 49.7
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 5.8e-69 265.8 353 53.0
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.7e-68 264.2 344 50.3
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.2e-68 263.8 344 54.1
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 2.2e-68 263.8 346 51.7
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 8.3e-68 261.9 355 53.0
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 2.4e-67 260.4 344 52.0
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 5.4e-67 259.2 350 50.0
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 3.5e-66 256.5 320 48.1
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 7.8e-66 255.4 351 47.3
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 1.9e-64 250.8 292 59.6
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 2.5e-64 250.4 345 47.8
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 7.3e-64 248.8 354 51.7
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 1.4e-62 244.6 351 50.1
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 8.9e-62 241.9 340 50.0
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 9.9e-61 238.4 327 47.4
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.1e-59 235.0 344 50.6
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 2.4e-59 233.8 344 54.7
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 2.4e-59 233.8 371 44.7
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 3.2e-59 233.4 357 52.4
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 5.4e-59 232.6 350 48.0
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 9.2e-59 231.9 350 45.1
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 1.2e-58 231.5 358 50.8
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 2.1e-58 230.7 378 48.7
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 2.7e-58 230.3 347 51.3
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 4.6e-58 229.6 401 47.1
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 6.0e-58 229.2 356 49.7
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 7.8e-58 228.8 328 53.7
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.1e-56 224.9 367 51.0
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 4.3e-56 223.0 348 46.0
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 5.6e-56 222.6 357 45.7
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 5.6e-56 222.6 352 44.9
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 5.6e-56 222.6 339 44.5
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 7.3e-56 222.2 284 49.6
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 1.2e-55 221.5 340 45.9
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 6.2e-55 219.2 348 42.8
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 8.1e-55 218.8 340 45.6
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 2.4e-54 217.2 346 41.6
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 2.4e-54 217.2 346 41.6
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 8.9e-54 215.3 343 50.4
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 2.0e-53 214.2 344 43.6
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 5.8e-53 212.6 344 43.6
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 1.3e-52 211.5 344 40.7
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 3.8e-52 209.9 371 45.6
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 8.4e-52 208.8 337 42.4
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 8.4e-52 208.8 335 45.7
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 8.4e-52 208.8 337 42.4
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 8.4e-52 208.8 337 42.4
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 8.4e-52 208.8 365 45.5
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 3.2e-51 206.8 371 51.5
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 3.2e-51 206.8 371 48.2
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 3.2e-51 206.8 371 51.5
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 3.2e-51 206.8 371 51.5
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 5.4e-51 206.1 234 57.7
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 1.6e-50 204.5 337 43.6
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 2.1e-50 204.1 356 42.7
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 6.0e-50 202.6 243 52.7
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 2.3e-49 200.7 293 43.3
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 2.5e-48 197.2 351 38.2
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 2.6e-45 187.2 189 54.5
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 2.6e-45 187.2 343 38.2
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 4.4e-45 186.4 374 36.6
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 1.2e-42 178.3 337 38.6
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 1.0e-41 175.3 337 38.3
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 2.5e-40 170.6 385 36.6
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 1.6e-39 167.9 343 37.6
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 8.1e-39 165.6 258 43.0
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 9.0e-38 162.2 337 36.8
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 1.5e-37 161.4 318 40.9
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 4.5e-37 159.8 356 36.5
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 5.8e-37 159.5 227 42.3
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 9.9e-37 158.7 337 34.7
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 1.7e-36 157.9 378 38.4
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 1.4e-35 154.8 337 35.0
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 4.2e-35 153.3 366 36.9
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 5.4e-35 152.9 423 35.7
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 7.1e-35 152.5 411 34.3
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 1.3e-33 148.3 330 32.7
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.4e-30 138.3 332 34.9
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 9.3e-27 125.6 206 44.7
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 7.4e-24 115.9 332 30.7
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 3.7e-23 113.6 348 32.5
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 1.7e-20 104.8 162 42.0
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.7e-20 104.8 363 38.6
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 1.3e-15 88.6 105 57.1
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 7.7e-13 79.3 169 32.5
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 2.2e-12 77.8 296 27.4
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 8.5e-12 75.9 201 31.3
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 5.5e-11 73.2 248 29.0
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 2.1e-10 71.2 289 27.0
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 3.0e-09 67.4 317 25.9
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 6.7e-09 66.2 96 40.6
Actinidia27197 Actinidia chinensis HOM05D003923 ORTHO05D004553 8.8e-09 65.9 98 43.9
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.5e-08 64.3 317 25.2
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 4.3e-08 63.5 398 23.4
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 9.7e-08 62.4 290 25.9
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 1.3e-07 62.0 319 25.1
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 1.1e-06 58.9 301 23.9
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 1.4e-06 58.5 112 34.8
HPP92_019313 Vanilla planifolia HOM05D003923 ORTHO05D004553 1.8e-06 58.2 228 29.4
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 2.4e-06 57.8 309 25.6
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 2.4e-06 57.8 292 27.1
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 5.3e-06 56.6 297 24.2
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 5.3e-06 56.6 284 25.0
BcaC07g38451 Brassica carinata HOM05D003923 ORTHO05D004553 9.1e-06 55.8 53 52.8


User provided reference genes

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