Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013596 Carpinus fangiana HOM05D000098 ORTHO05D000523 9.3e-104 380.2 187 100.0
Haze_22214 Corylus avellana HOM05D000098 ORTHO05D000523 5.7e-45 184.9 185 57.8
CiPaw.07G183900 Carya illinoinensis HOM05D000098 ORTHO05D000523 1.1e-16 90.9 69 65.2
QL09p027661 Quercus lobata HOM05D000098 ORTHO05D000523 1.5e-13 80.5 69 62.3
Potri.001G080700 Populus trichocarpa HOM05D000098 ORTHO05D000523 2.4e-11 73.2 71 53.5
Potri.003G150300 Populus trichocarpa HOM05D000098 ORTHO05D000523 3.2e-11 72.8 84 45.2
TAR636G1501 Trochodendron aralioides HOM05D000098 ORTHO05D000523 4.1e-11 72.4 53 64.2
Nitab4.5_0000914g0120 Nicotiana tabacum HOM05D000098 ORTHO05D000523 5.4e-11 72.0 53 62.3
Sabra03G0108800 Salix brachista HOM05D000098 ORTHO05D000523 1.2e-10 70.9 71 50.7
Nitab4.5_0002153g0070 Nicotiana tabacum HOM05D000098 ORTHO05D000523 1.6e-10 70.5 64 57.8
vmacro09927 Vaccinium macrocarpon HOM05D000098 ORTHO05D000523 2.1e-10 70.1 45 73.3
Hma1.2p1_0502F.1_g167800 Hydrangea macrophylla HOM05D000098 ORTHO05D000523 2.7e-10 69.7 91 45.1
Dinv34548 Davidia involucrata HOM05D000098 ORTHO05D000523 3.5e-10 69.3 149 33.6
Rhsim09G0188900 Rhododendron simsii HOM05D000098 ORTHO05D000523 3.5e-10 69.3 77 50.6
TWI23G0240 Tripterygium wilfordii HOM05D000098 ORTHO05D000523 3.5e-10 69.3 50 72.0
FAN10G3570 Fragaria x ananassa HOM05D000098 ORTHO05D000523 6.0e-10 68.6 54 66.7
Sed0025390 Sechium edule HOM05D000098 ORTHO05D000523 7.8e-10 68.2 54 59.3
CSS0030518 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D000523 1.3e-09 67.4 146 35.6
FAN03G1386 Fragaria x ananassa HOM05D000098 ORTHO05D000523 1.3e-09 67.4 54 64.8
RcHm_v2.0_Chr1g0373501 Rosa chinensis HOM05D000098 ORTHO05D000523 1.3e-09 67.4 54 64.8
Dinv16879 Davidia involucrata HOM05D000098 ORTHO05D000523 1.7e-09 67.0 53 60.4
Manes.06G130500 Manihot esculenta HOM05D000098 ORTHO05D000523 1.7e-09 67.0 53 62.3
Actinidia01039 Actinidia chinensis HOM05D000098 ORTHO05D000523 3.0e-09 66.2 53 60.4
ClCG01G004730 Citrullus lanatus HOM05D000098 ORTHO05D000523 3.0e-09 66.2 54 57.4
Actinidia31767 Actinidia chinensis HOM05D000098 ORTHO05D000523 3.9e-09 65.9 53 62.3
FvH4_7g26810 Fragaria vesca HOM05D000098 ORTHO05D000523 3.9e-09 65.9 54 64.8
FAN01G2947 Fragaria x ananassa HOM05D000098 ORTHO05D000523 3.9e-09 65.9 54 63.0
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.9e-09 65.9 64 56.2
Nitab4.5_0010706g0020 Nicotiana tabacum HOM05D000098 ORTHO05D000523 3.9e-09 65.9 53 58.5
Nn1g00821 Nelumbo nucifera HOM05D000098 ORTHO05D000523 6.6e-09 65.1 45 62.2
CAN.G1602.10 Capsicum annuum HOM05D000098 ORTHO05D000523 1.1e-08 64.3 54 57.4
FAN06G0197 Fragaria x ananassa HOM05D000098 ORTHO05D000523 1.1e-08 64.3 54 63.0
Gohir.D09G249750 Gossypium hirsutum HOM05D000098 ORTHO05D000523 1.1e-08 64.3 86 45.3
CAN.G247.6 Capsicum annuum HOM05D000098 ORTHO05D000523 1.5e-08 63.9 53 54.7
Gohir.A03G060400 Gossypium hirsutum HOM05D000098 ORTHO05D000523 1.5e-08 63.9 53 60.4
Gohir.D03G105600 Gossypium hirsutum HOM05D000098 ORTHO05D000523 1.5e-08 63.9 53 60.4
Gorai.003G111800 Gossypium raimondii HOM05D000098 ORTHO05D000523 1.5e-08 63.9 53 60.4
DCAR_020168 Daucus carota HOM05D000098 ORTHO05D000523 1.9e-08 63.5 53 58.5
Gohir.A09G248800 Gossypium hirsutum HOM05D000098 ORTHO05D000523 1.9e-08 63.5 94 41.5
Gorai.006G274100 Gossypium raimondii HOM05D000098 ORTHO05D000523 1.9e-08 63.5 86 44.2
Thecc.03G147200 Theobroma cacao HOM05D000098 ORTHO05D000523 1.9e-08 63.5 53 58.5
ATR0665G438 Amborella trichopoda HOM05D000098 ORTHO05D000523 2.5e-08 63.2 47 61.7
Aqoxy3G02701 Aquilegia oxysepala HOM05D000098 ORTHO05D000523 2.5e-08 63.2 54 59.3
MELO3C005463.2 Cucumis melo HOM05D000098 ORTHO05D000523 2.5e-08 63.2 37 70.3
GSVIVG01013874001 Vitis vinifera HOM05D000098 ORTHO05D000523 3.3e-08 62.8 46 67.4
Glyma.20G196800 Glycine max HOM05D000098 ORTHO05D000523 4.3e-08 62.4 69 46.4
CsaV3_5G004920 Cucumis sativus L. HOM05D000098 ORTHO05D000523 5.6e-08 62.0 54 53.7
Prupe.2G271300 Prunus persica HOM05D000098 ORTHO05D000523 5.6e-08 62.0 47 57.4
Nn6g33798 Nelumbo nucifera HOM05D000098 ORTHO05D000523 7.3e-08 61.6 53 56.6
PGR142G1260 Punica granatum HOM05D000098 ORTHO05D000523 7.3e-08 61.6 65 55.4
Cpa.g.sc13.239 Carica papaya HOM05D000098 ORTHO05D000523 9.6e-08 61.2 54 57.4
Psat6g170960 Pisum sativum HOM05D000098 ORTHO05D000523 9.6e-08 61.2 94 37.2
Solyc05g054900.3 Solanum lycopersicum HOM05D000098 ORTHO05D000523 9.6e-08 61.2 55 56.4
Ciclev10005983m.g Citrus clementina HOM05D000098 ORTHO05D000523 1.2e-07 60.8 53 58.5
Eucgr.K00120 Eucalyptus grandis HOM05D000098 ORTHO05D000523 1.2e-07 60.8 35 74.3
Medtr1g090190 Medicago truncatula HOM05D000098 ORTHO05D000523 1.2e-07 60.8 92 38.0
Peaxi162Scf01305g00012 Petunia axillaris HOM05D000098 ORTHO05D000523 1.2e-07 60.8 53 52.8
Sabra01G0057800 Salix brachista HOM05D000098 ORTHO05D000523 1.2e-07 60.8 94 37.2
PGSC0003DMG400023505 Solanum tuberosum HOM05D000098 ORTHO05D000523 1.2e-07 60.8 55 52.7
Cc11_g06250 Coffea canephora HOM05D000098 ORTHO05D000523 1.6e-07 60.5 45 60.0
Glyma.10G193600 Glycine max HOM05D000098 ORTHO05D000523 2.1e-07 60.1 53 52.8
Lj8C48T5 Lonicera japonica HOM05D000098 ORTHO05D000523 2.8e-07 59.7 84 42.9
MD07G1247200 Malus domestica HOM05D000098 ORTHO05D000523 2.8e-07 59.7 45 55.6
SGA_v2.0_scaffold44G16582 Striga asiatica HOM05D000098 ORTHO05D000523 3.6e-07 59.3 54 53.7
Duzib068G0773 Durio zibethinus HOM05D000098 ORTHO05D000523 4.7e-07 58.9 54 55.6
Duzib205G0259 Durio zibethinus HOM05D000098 ORTHO05D000523 4.7e-07 58.9 53 54.7
Ah.07g208870 Amaranthus hybridus HOM05D000098 ORTHO05D000523 6.2e-07 58.5 42 57.1
HanXRQChr09g0252821 Helianthus annuus HOM05D000098 ORTHO05D000523 6.2e-07 58.5 55 54.5
Phvul.007G135500 Phaseolus vulgaris HOM05D000098 ORTHO05D000523 6.2e-07 58.5 56 53.6
ECA238G0195 Erigeron canadensis HOM05D000098 ORTHO05D000523 8.1e-07 58.2 49 55.1
PSO717G0027 Papaver somniferum HOM05D000098 ORTHO05D000523 8.1e-07 58.2 46 60.9
AL6G17780 Arabidopsis lyrata HOM05D000098 ORTHO05D000523 1.1e-06 57.8 35 71.4
BcaB01g06044 Brassica carinata HOM05D000098 ORTHO05D000523 1.1e-06 57.8 55 56.4
BolC3t12912H Brassica oleracea HOM05D000098 ORTHO05D000523 1.1e-06 57.8 55 56.4
PSO675G8421 Papaver somniferum HOM05D000098 ORTHO05D000523 1.1e-06 57.8 56 53.6
Atru.chr1.926 Acer truncatum HOM05D000098 ORTHO05D000523 1.4e-06 57.4 47 66.0
Aa31LG3G18930 Aethionema arabicum HOM05D000098 ORTHO05D000523 1.4e-06 57.4 49 57.1
arahy.Tifrunner.gnm1.ann1.51A16S Arachis hypogaea HOM05D000098 ORTHO05D000523 1.4e-06 57.4 69 43.5
CANSAT56G1124 Cannabis sativa HOM05D000098 ORTHO05D000523 1.4e-06 57.4 58 51.7
Sp6g35390 Schrenkiella parvula HOM05D000098 ORTHO05D000523 1.4e-06 57.4 47 55.3
BcaB01g05696 Brassica carinata HOM05D000098 ORTHO05D000523 1.8e-06 57.0 55 54.5
BcaB01g05697 Brassica carinata HOM05D000098 ORTHO05D000523 1.8e-06 57.0 55 54.5
A10p29220 Brassica napus HOM05D000098 ORTHO05D000523 2.4e-06 56.6 47 55.3
C03p03760 Brassica napus HOM05D000098 ORTHO05D000523 3.1e-06 56.2 55 54.5
CANSAT56G2333 Cannabis sativa HOM05D000098 ORTHO05D000523 3.1e-06 56.2 58 50.0
Lj5g0019185 Lotus japonicus HOM05D000098 ORTHO05D000523 3.1e-06 56.2 51 52.9
TPR.G13392 Trifolium pratense HOM05D000098 ORTHO05D000523 3.1e-06 56.2 92 37.0
TAR629G1622 Trochodendron aralioides HOM05D000098 ORTHO05D000523 3.1e-06 56.2 42 64.3
BcaC06g32431 Brassica carinata HOM05D000098 ORTHO05D000523 4.0e-06 55.8 51 54.9
BcaC06g32480 Brassica carinata HOM05D000098 ORTHO05D000523 4.0e-06 55.8 51 54.9
BcaC06g32483 Brassica carinata HOM05D000098 ORTHO05D000523 4.0e-06 55.8 45 55.6
A03p03320 Brassica napus HOM05D000098 ORTHO05D000523 4.0e-06 55.8 55 52.7
C09p69610 Brassica napus HOM05D000098 ORTHO05D000523 4.0e-06 55.8 51 54.9
BolC9t59704H Brassica oleracea HOM05D000098 ORTHO05D000523 4.0e-06 55.8 51 54.9
BraA03t09684Z Brassica rapa HOM05D000098 ORTHO05D000523 4.0e-06 55.8 55 52.7
COL.COLO4_37326 Corchorus olitorius HOM05D000098 ORTHO05D000523 4.0e-06 55.8 47 55.3
Migut.F00535 Erythranthe guttata HOM05D000098 ORTHO05D000523 4.0e-06 55.8 55 52.7
arahy.Tifrunner.gnm1.ann1.L7KTRP Arachis hypogaea HOM05D000098 ORTHO05D000523 5.2e-06 55.5 60 45.0
Thhalv10014745m.g Eutrema salsugineum HOM05D000098 ORTHO05D000523 5.2e-06 55.5 52 61.5
Lsat_1_v5_gn_2_19020 Lactuca sativa HOM05D000098 ORTHO05D000523 5.2e-06 55.5 53 52.8
MD01G1176400 Malus domestica HOM05D000098 ORTHO05D000523 6.8e-06 55.1 55 52.7
AT5G07475 Arabidopsis thaliana HOM05D000098 ORTHO05D000523 8.9e-06 54.7 35 65.7
HanXRQChr07g0205611 Helianthus annuus HOM05D000098 ORTHO05D000523 8.9e-06 54.7 86 39.5


User provided reference genes

Program Settings