Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 1.4e-159 566.2 286 100.0
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 1.2e-129 466.8 342 75.7
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 1.2e-126 456.8 280 82.1
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 3.0e-122 442.2 279 77.8
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 2.7e-118 429.1 286 74.8
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 5.9e-118 427.9 288 72.6
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 7.8e-118 427.6 283 74.6
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 3.0e-117 425.6 282 72.7
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 3.0e-117 425.6 279 77.1
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 1.5e-116 423.3 283 73.5
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 6.2e-115 417.9 298 72.8
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 4.4e-113 411.8 284 73.2
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 1.7e-112 409.8 277 71.5
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 2.9e-112 409.1 281 72.6
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 2.9e-112 409.1 280 73.6
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 4.9e-112 408.3 276 73.6
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 6.4e-112 407.9 281 72.6
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 1.4e-111 406.8 291 70.4
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 1.4e-111 406.8 285 71.9
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.4e-111 406.8 277 71.1
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 3.2e-111 405.6 287 71.4
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 4.1e-111 405.2 283 73.1
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 1.2e-110 403.7 281 72.2
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.6e-110 403.3 287 71.4
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 2.0e-110 402.9 291 69.8
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 2.7e-110 402.5 283 70.3
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 4.6e-110 401.7 286 69.6
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 6.0e-110 401.4 284 72.9
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 1.3e-109 400.2 281 73.3
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 1.7e-109 399.8 281 69.8
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 3.0e-109 399.1 250 79.6
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 3.0e-109 399.1 284 70.8
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 5.0e-109 398.3 224 87.9
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 8.6e-109 397.5 276 68.8
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 2.5e-108 396.0 304 66.1
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 7.3e-108 394.4 290 67.2
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 7.3e-108 394.4 283 71.0
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 1.2e-107 393.7 291 70.1
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 2.8e-107 392.5 275 70.2
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 4.7e-107 391.7 288 68.1
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 4.7e-107 391.7 278 69.8
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 1.4e-106 390.2 284 69.7
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 1.4e-106 390.2 275 69.8
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 2.3e-106 389.4 288 67.7
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 8.9e-106 387.5 284 68.3
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 6.4e-104 381.3 264 72.3
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 8.3e-104 380.9 286 67.1
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.4e-103 380.2 283 68.2
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 3.2e-103 379.0 287 65.9
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 5.4e-103 378.3 252 70.6
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 1.2e-102 377.1 285 69.8
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 1.6e-102 376.7 248 75.0
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 2.1e-102 376.3 280 67.5
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 4.6e-102 375.2 252 73.4
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 1.3e-101 373.6 316 62.3
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.7e-101 373.2 284 66.2
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 6.6e-101 371.3 284 64.1
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 6.6e-101 371.3 286 64.3
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 1.2e-99 367.1 281 66.5
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.1e-99 366.3 269 66.5
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 8.1e-99 364.4 280 65.7
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 8.1e-99 364.4 250 72.8
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 1.1e-98 364.0 272 65.8
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 1.1e-98 364.0 278 67.3
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 1.8e-98 363.2 283 61.5
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 3.1e-98 362.5 278 65.1
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 4.0e-98 362.1 281 64.4
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 8.9e-98 360.9 249 71.5
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 1.2e-97 360.5 283 67.1
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 2.0e-97 359.8 285 68.1
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 5.8e-97 358.2 276 64.1
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 7.6e-97 357.8 281 65.1
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.3e-96 357.1 245 71.4
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 1.7e-96 356.7 278 62.2
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 2.7e-94 349.4 224 74.6
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 3.5e-94 349.0 279 62.0
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 3.5e-94 349.0 245 71.0
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 2.3e-93 346.3 289 58.8
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 1.5e-92 343.6 245 69.0
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.5e-92 343.6 245 66.9
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 1.6e-91 340.1 305 59.0
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 6.2e-91 338.2 245 65.7
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 8.1e-91 337.8 216 73.1
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 1.1e-90 337.4 222 73.0
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 3.1e-90 335.9 220 73.2
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 2.0e-89 333.2 253 68.8
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 7.6e-89 331.3 281 59.1
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 7.6e-89 331.3 262 64.1
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 1.7e-88 330.1 223 68.2
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 3.8e-88 328.9 308 58.1
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 1.9e-87 326.6 224 71.0
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.4e-87 326.2 321 54.2
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 3.2e-87 325.9 224 67.4
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 7.1e-87 324.7 284 60.9
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 9.3e-87 324.3 220 70.5
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 2.3e-85 319.7 220 68.6
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.5e-84 317.0 330 51.5
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 9.6e-84 314.3 250 64.0
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 3.1e-82 309.3 284 56.0
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 5.8e-81 305.1 184 78.8
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 6.4e-80 301.6 247 60.3
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 1.4e-79 300.4 246 60.2
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 1.4e-79 300.4 246 60.2
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 1.4e-79 300.4 246 60.2
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 1.4e-79 300.4 246 60.2
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 5.4e-79 298.5 216 69.0
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 1.9e-76 290.0 169 80.5
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 5.5e-71 271.9 197 68.5
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 1.8e-69 266.9 280 52.9
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 2.3e-69 266.5 251 58.2
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 1.1e-68 264.2 166 74.7
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 8.2e-59 231.5 248 48.4
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 1.2e-57 227.6 242 47.5
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 1.3e-56 224.2 273 43.6
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 8.5e-56 221.5 132 78.0
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 1.4e-55 220.7 258 51.9
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.4e-55 220.7 146 71.9
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 1.5e-52 210.7 148 71.6
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 6.3e-51 205.3 212 44.8
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 9.7e-44 181.4 119 74.8
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 8.2e-43 178.3 198 44.9
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 1.2e-41 174.5 106 74.5
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 9.4e-39 164.9 129 65.9
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 2.2e-27 127.1 187 35.8
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 4.5e-25 119.4 129 51.2
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 2.9e-24 116.7 189 35.4
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 5.0e-24 115.9 80 66.2
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 2.5e-23 113.6 80 66.2
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 6.1e-22 109.0 119 54.6
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 4.0e-21 106.3 82 58.5
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 2.0e-20 104.0 93 55.9
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 2.2e-19 100.5 81 60.5
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 1.8e-18 97.4 70 64.3
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 5.7e-12 75.9 51 68.6
CDE02G1103 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 7.0e-10 68.9 47 72.3
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 3.5e-09 66.6 43 72.1
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 3.5e-09 66.6 39 74.4
CSS0008660 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 9.5e-07 58.5 140 32.9
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 1.6e-06 57.8 52 50.0
Thhalv10029279m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 3.6e-06 56.6 57 52.6


User provided reference genes

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