Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 1.8e-34 148.7 74 100.0
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 2.6e-33 144.8 74 97.3
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 1.1e-23 112.8 78 74.4
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 1.1e-23 112.8 71 83.1
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 1.2e-22 109.4 75 74.7
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 1.6e-22 109.0 76 76.3
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 2.1e-22 108.6 67 79.1
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 2.3e-21 105.1 77 71.4
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 3.0e-21 104.8 76 73.7
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 3.9e-21 104.4 73 71.2
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 3.9e-21 104.4 75 76.0
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 5.1e-21 104.0 74 73.0
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 5.1e-21 104.0 76 69.7
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 6.6e-21 103.6 76 67.1
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 8.7e-21 103.2 75 70.7
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 8.7e-21 103.2 75 74.7
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 1.5e-20 102.4 74 74.3
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 2.5e-20 101.7 74 73.0
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 3.3e-20 101.3 74 68.9
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 7.3e-20 100.1 76 65.8
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 9.6e-20 99.8 75 72.0
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 2.1e-19 98.6 64 75.0
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 1.8e-18 95.5 74 67.6
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 1.8e-18 95.5 72 65.3
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 2.4e-18 95.1 74 67.6
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 3.1e-18 94.7 55 80.0
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 3.1e-18 94.7 77 68.8
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 4.0e-18 94.4 74 67.6
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 4.0e-18 94.4 74 64.9
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 1.2e-17 92.8 75 66.7
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 1.2e-17 92.8 74 60.8
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 2.0e-17 92.0 74 62.2
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 2.6e-17 91.7 74 62.2
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 2.6e-17 91.7 74 63.5
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 2.6e-17 91.7 75 65.3
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 3.4e-17 91.3 67 71.6
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 4.5e-17 90.9 74 64.9
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 7.6e-17 90.1 67 70.1
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 7.6e-17 90.1 71 67.6
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 7.6e-17 90.1 74 62.2
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 1.3e-16 89.4 74 60.8
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 1.7e-16 89.0 67 70.1
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 2.9e-16 88.2 74 60.8
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 3.8e-16 87.8 72 65.3
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 4.9e-16 87.4 76 61.8
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 4.9e-16 87.4 81 58.0
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 4.9e-16 87.4 50 78.0
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 8.4e-16 86.7 72 65.3
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 1.1e-15 86.3 67 65.7
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 1.4e-15 85.9 75 61.3
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 1.4e-15 85.9 75 61.3
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 1.9e-15 85.5 74 60.8
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 1.9e-15 85.5 72 59.7
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 3.2e-15 84.7 74 62.2
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 3.2e-15 84.7 74 56.8
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 4.2e-15 84.3 75 61.3
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 4.2e-15 84.3 75 61.3
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 4.2e-15 84.3 74 59.5
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 5.4e-15 84.0 75 61.3
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 5.4e-15 84.0 75 61.3
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 5.4e-15 84.0 75 61.3
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 5.4e-15 84.0 70 60.0
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 5.4e-15 84.0 70 60.0
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 7.1e-15 83.6 74 60.8
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 9.3e-15 83.2 66 59.1
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 2.7e-14 81.6 74 59.5
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 7.9e-14 80.1 64 62.5
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 1.3e-13 79.3 74 56.8
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 6.7e-13 77.0 76 56.6
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 1.5e-12 75.9 76 56.6
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 2.5e-12 75.1 75 58.7
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 4.3e-12 74.3 77 51.9
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 4.3e-12 74.3 77 51.9
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 3.7e-11 71.2 70 52.9
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 4.8e-11 70.9 77 50.6
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 6.2e-11 70.5 70 52.9
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 1.1e-10 69.7 62 56.5
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 1.1e-10 69.7 70 55.7
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 4.0e-10 67.8 40 65.0
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 4.0e-10 67.8 49 67.3
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 4.5e-09 64.3 53 52.8
Nn7g37890 Nelumbo nucifera HOM05D021221 ORTHO05D025179 4.9e-08 60.8 93 44.1
Sed0025248 Sechium edule HOM05D066588 ORTHO05D010018 5.5e-07 57.4 46 69.6


User provided reference genes

Program Settings