Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013555 Carpinus fangiana HOM05D002866 ORTHO05D008706 2.5e-212 741.9 378 100.0
Haze_22176 Corylus avellana HOM05D002866 ORTHO05D008706 3.2e-196 688.3 378 92.9
QL09p028565 Quercus lobata HOM05D002866 ORTHO05D008706 2.2e-184 649.0 377 85.9
CiPaw.07G185900 Carya illinoinensis HOM05D002866 ORTHO05D008706 5.9e-182 641.0 379 85.2
Potri.004G233400 Populus trichocarpa HOM05D002866 ORTHO05D008706 1.5e-172 609.8 379 79.7
TWI39G0340 Tripterygium wilfordii HOM05D002866 ORTHO05D008706 4.7e-171 604.7 379 79.9
CiPaw.08G040800 Carya illinoinensis HOM05D002866 ORTHO05D008706 3.0e-170 602.1 388 80.4
Gohir.D12G199800 Gossypium hirsutum HOM05D002866 ORTHO05D008706 1.8e-167 592.8 379 78.4
Duzib205G1859 Durio zibethinus HOM05D002866 ORTHO05D008706 2.4e-167 592.4 379 77.6
Atru.chr1.857 Acer truncatum HOM05D002866 ORTHO05D008706 4.1e-167 591.7 379 78.6
Gohir.A12G197200 Gossypium hirsutum HOM05D002866 ORTHO05D008706 7.0e-167 590.9 379 77.8
Thecc.03G150500 Theobroma cacao HOM05D002866 ORTHO05D008706 9.2e-167 590.5 377 78.2
Dinv16857 Davidia involucrata HOM05D002866 ORTHO05D000096 1.6e-166 589.7 379 79.2
CANSAT56G0863 Cannabis sativa HOM05D002866 ORTHO05D008706 1.3e-165 586.6 379 77.3
COL.COLO4_14065 Corchorus olitorius HOM05D002866 ORTHO05D008706 5.0e-165 584.7 379 76.8
Ciclev10005197m.g Citrus clementina HOM05D002866 ORTHO05D008706 2.5e-164 582.4 378 78.3
CSS0049284 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 3.3e-164 582.0 380 77.6
CSS0019630 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 4.3e-164 581.6 381 77.4
Oeu021695.1 Olea europaea HOM05D002866 ORTHO05D008706 1.2e-163 580.1 379 74.4
Gorai.008G215000 Gossypium raimondii HOM05D002866 ORTHO05D008706 6.1e-163 577.8 407 73.0
RcHm_v2.0_Chr1g0373901 Rosa chinensis HOM05D002866 ORTHO05D008706 8.0e-163 577.4 379 76.8
TAR636G1476 Trochodendron aralioides HOM05D002866 ORTHO05D008706 3.0e-162 575.5 382 76.4
HanXRQChr05g0139511 Helianthus annuus HOM05D002866 ORTHO05D008706 6.8e-162 574.3 380 74.5
TAR629G0107 Trochodendron aralioides HOM05D002866 ORTHO05D008706 8.9e-162 573.9 383 76.2
Eucgr.K00134 Eucalyptus grandis HOM05D002866 ORTHO05D008706 2.0e-161 572.8 378 75.7
CsaV3_4G004120 Cucumis sativus L. HOM05D002866 ORTHO05D008706 2.2e-160 569.3 380 75.8
Solyc03g093430.3 Solanum lycopersicum HOM05D002866 ORTHO05D008706 2.2e-160 569.3 378 74.1
VMungo1127G0600 Vigna mungo HOM05D002866 ORTHO05D008706 3.7e-160 568.5 380 74.7
MSTRG.135 Avicennia marina HOM05D002866 ORTHO05D008706 4.9e-160 568.2 379 73.4
Rhsim03G0163000 Rhododendron simsii HOM05D002866 ORTHO05D008706 6.4e-160 567.8 432 69.0
Lalb_Chr01g0008171 Lupinus albus HOM05D002866 ORTHO05D008706 8.3e-160 567.4 380 75.5
ClCG07G016890 Citrullus lanatus HOM05D002866 ORTHO05D008706 1.1e-159 567.0 399 73.4
MD07G1250400 Malus domestica HOM05D002866 ORTHO05D008706 1.1e-159 567.0 379 76.0
Glyma.12G241300 Glycine max HOM05D002866 ORTHO05D008706 1.4e-159 566.6 380 75.3
MELO3C017654.2 Cucumis melo HOM05D002866 ORTHO05D008706 1.8e-159 566.2 380 75.0
Glyma.09G001400 Glycine max HOM05D002866 ORTHO05D008706 1.8e-159 566.2 380 75.5
Sabra01G0178500 Salix brachista HOM05D002866 ORTHO05D008706 1.8e-159 566.2 434 68.7
arahy.Tifrunner.gnm1.ann1.E5894Z Arachis hypogaea HOM05D002866 ORTHO05D008706 4.1e-159 565.1 409 69.9
arahy.Tifrunner.gnm1.ann1.J95VX3 Arachis hypogaea HOM05D002866 ORTHO05D008706 4.1e-159 565.1 403 70.7
PGSC0003DMG400018852 Solanum tuberosum HOM05D002866 ORTHO05D008706 5.4e-159 564.7 379 73.9
Nitab4.5_0002346g0030 Nicotiana tabacum HOM05D002866 ORTHO05D008706 7.0e-159 564.3 379 74.1
Lsat_1_v5_gn_8_9940 Lactuca sativa HOM05D002866 ORTHO05D008706 9.2e-159 563.9 379 73.1
Cc02_g04580 Coffea canephora HOM05D002866 ORTHO05D008706 2.0e-158 562.8 378 73.5
Lj3g0011743 Lotus japonicus HOM05D002866 ORTHO05D008706 2.0e-158 562.8 380 75.5
Manes.06G132500 Manihot esculenta HOM05D002866 ORTHO05D008706 2.0e-158 562.8 385 73.8
Peaxi162Scf00271g00837 Petunia axillaris HOM05D002866 ORTHO05D008706 4.6e-158 561.6 378 73.3
CAN.G485.11 Capsicum annuum HOM05D002866 ORTHO05D008706 7.8e-158 560.8 380 73.2
vmacro22347 Vaccinium macrocarpon HOM05D002866 ORTHO05D008706 1.0e-157 560.5 377 75.3
Sed0026429 Sechium edule HOM05D002866 ORTHO05D008706 1.7e-157 559.7 380 74.2
Ca_19791_v3 Cicer arietinum L. HOM05D002866 ORTHO05D008706 6.6e-157 557.8 379 74.1
TPR.G4977 Trifolium pratense HOM05D002866 ORTHO05D008706 1.1e-156 557.0 379 74.4
Psat7g229240 Pisum sativum HOM05D002866 ORTHO05D008706 2.5e-156 555.8 379 73.4
Nn6g33864 Nelumbo nucifera HOM05D002866 ORTHO05D008706 3.3e-156 555.4 383 73.4
Dinv06581 Davidia involucrata HOM05D002866 ORTHO05D008706 7.3e-156 554.3 362 77.9
MD01G1178200 Malus domestica HOM05D002866 ORTHO05D008706 1.2e-155 553.5 373 75.3
Medtr4g029530 Medicago truncatula HOM05D002866 ORTHO05D008706 1.2e-155 553.5 379 72.8
Migut.F00510 Erythranthe guttata HOM05D002866 ORTHO05D008706 1.0e-154 550.4 377 72.1
FvH4_7g27080 Fragaria vesca HOM05D002866 ORTHO05D008706 1.2e-153 547.0 379 72.6
Lalb_Chr03g0033851 Lupinus albus HOM05D002866 ORTHO05D008706 1.2e-153 547.0 380 73.2
FAN06G0893 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.5e-153 546.6 389 71.5
Lj1A977T67 Lonicera japonica HOM05D002866 ORTHO05D008706 3.4e-153 545.4 432 67.6
THA.LOC104819416 Tarenaya hassleriana HOM05D002866 ORTHO05D008706 3.4e-153 545.4 378 71.2
Cpa.g.sc13.273 Carica papaya HOM05D002866 ORTHO05D008706 3.7e-152 542.0 355 76.9
Nitab4.5_0001267g0040 Nicotiana tabacum HOM05D002866 ORTHO05D008706 4.9e-152 541.6 379 71.5
Aqoxy3G02809 Aquilegia oxysepala HOM05D002866 ORTHO05D008706 6.4e-152 541.2 384 71.6
CARHR275300 Cardamine hirsuta HOM05D002866 ORTHO05D008706 1.4e-151 540.0 378 71.2
AL8G38230 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 3.2e-151 538.9 378 71.4
PGR142G0955 Punica granatum HOM05D002866 ORTHO05D008706 4.1e-151 538.5 378 72.0
FAN10G3812 Fragaria x ananassa HOM05D002866 ORTHO05D008706 7.0e-151 537.7 379 72.3
BraA03t13839Z Brassica rapa HOM05D002866 ORTHO05D008706 2.7e-150 535.8 378 70.6
A03p47120 Brassica napus HOM05D002866 ORTHO05D008929 4.6e-150 535.0 376 70.7
SGA_v2.0_scaffold60G20804 Striga asiatica HOM05D006112 ORTHO05D000096 4.6e-150 535.0 404 67.1
Thhalv10005440m.g Eutrema salsugineum HOM05D002866 ORTHO05D008706 6.0e-150 534.6 378 70.6
Carub.0008s2222 Capsella rubella HOM05D002866 ORTHO05D008706 1.1e-148 530.4 378 69.8
C07p45230 Brassica napus HOM05D002866 ORTHO05D008929 4.3e-148 528.5 374 70.6
Sp2g24730 Schrenkiella parvula HOM05D002866 ORTHO05D008706 4.3e-148 528.5 378 70.4
A09p07320 Brassica napus HOM05D002866 ORTHO05D008706 1.4e-146 523.5 379 69.7
BolC7t45046H Brassica oleracea HOM05D002866 ORTHO05D008929 3.1e-146 522.3 379 69.7
BcaNung01432 Brassica carinata HOM05D002866 ORTHO05D008706 4.0e-146 521.9 378 68.5
BraA09t36387Z Brassica rapa HOM05D002866 ORTHO05D008706 6.8e-146 521.2 379 69.4
BcaC04g23445 Brassica carinata HOM05D002866 ORTHO05D008706 2.6e-145 519.2 379 69.1
MBI04_g34101_MAGBIO Magnolia biondii HOM05D002866 ORTHO05D008706 5.8e-145 518.1 387 68.2
C09p08260 Brassica napus HOM05D002866 ORTHO05D008706 2.9e-144 515.8 379 68.3
BolC9t53736H Brassica oleracea HOM05D002866 ORTHO05D008706 2.9e-144 515.8 379 68.3
FAN01G3021 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.4e-143 513.5 410 66.1
Aa31LG11G1890 Aethionema arabicum HOM05D002866 ORTHO05D008706 7.8e-142 507.7 396 65.4
Prupe.2G274000 Prunus persica HOM05D002866 ORTHO05D008706 3.9e-141 505.4 322 78.9
EL10Ac3g05867 Beta vulgaris HOM05D002866 ORTHO05D008706 1.1e-140 503.8 382 66.2
FAN06G0035 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.5e-140 503.4 379 68.1
Eucgr.A02912 Eucalyptus grandis HOM05D002866 ORTHO05D008706 3.3e-140 502.3 378 67.2
Ah.07g207580 Amaranthus hybridus HOM05D002866 ORTHO05D008706 1.6e-139 500.0 382 65.2
unitig_0.g267 Utricularia gibba HOM05D002866 ORTHO05D008706 3.6e-139 498.8 379 66.2
PSO063G2361 Papaver somniferum HOM05D002866 ORTHO05D008706 4.9e-136 488.4 388 65.2
Hund27168 Selenicereus undatus HOM05D002866 ORTHO05D008706 1.6e-134 483.4 459 57.3
Sopen03g024260 Solanum pennellii HOM05D002866 ORTHO05D008706 2.1e-134 483.0 331 73.4
FAN03G0071 Fragaria x ananassa HOM05D002866 ORTHO05D008706 3.0e-133 479.2 379 66.8
CDE02G3129 Ceratophyllum demersum HOM05D002866 ORTHO05D008706 3.2e-127 459.1 382 62.3
Os07g0486500 Oryza sativa ssp. japonica HOM05D002866 ORTHO05D008706 1.7e-125 453.4 383 61.6
Actinidia13600 Actinidia chinensis HOM05D000164 ORTHO05D000096 4.8e-123 445.3 276 82.2
AUR62002232 Chenopodium quinoa HOM05D002866 ORTHO05D008706 4.0e-122 442.2 382 60.5
AUR62015444 Chenopodium quinoa HOM05D002866 ORTHO05D008706 7.6e-121 438.0 382 60.5
ATR0057G110 Amborella trichopoda HOM05D002866 ORTHO05D008706 2.2e-120 436.4 410 60.2
HPP92_007440 Vanilla planifolia HOM05D002866 ORTHO05D008706 1.6e-115 420.2 386 57.3
AT5G61530 Arabidopsis thaliana HOM05D002866 ORTHO05D008706 1.9e-111 406.8 277 74.7
Zm00001eb321610 Zea mays HOM05D002866 ORTHO05D008706 2.1e-110 403.3 387 56.6
AagrBONN_evm.TU.Sc2ySwM_368.2292 Anthoceros agrestis HOM05D002866 ORTHO05D008706 7.9e-78 295.0 422 41.9
Zm00001eb105130 Zea mays HOM05D002866 ORTHO05D008706 2.0e-73 280.4 245 60.0
Mapoly0101s0019 Marchantia polymorpha HOM05D002866 ORTHO05D008706 1.8e-69 267.3 460 37.4
AL6G41360 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 3.2e-63 246.5 158 75.9
AL4G20970 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 8.0e-62 241.9 158 75.3
AL7G45270 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 4.0e-61 239.6 161 73.9
GSVIVG01032279001 Vitis vinifera HOM05D002866 ORTHO05D008706 2.0e-52 210.7 148 75.0
CBR_g12377 Chara braunii HOM05D002866 ORTHO05D008706 2.2e-51 207.2 343 39.1
AL9U10640 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 2.4e-50 203.8 161 64.6
GSVIVG01032275001 Vitis vinifera HOM05D002866 ORTHO05D008706 6.1e-46 189.1 138 69.6
GSVIVG01005702001 Vitis vinifera HOM05D002866 ORTHO05D008706 6.4e-43 179.1 126 72.2
SEGI_37372 Sequoiadendron giganteum HOM05D002866 ORTHO05D008706 4.1e-42 176.4 163 53.4
ECA233G4879 Erigeron canadensis HOM05D000383 ORTHO05D000730 8.3e-35 152.1 102 65.7
Oeu017777.1 Olea europaea HOM05D002866 ORTHO05D008706 2.7e-33 147.1 109 68.8
Oeu031440.1 Olea europaea HOM05D002866 ORTHO05D008706 9.5e-31 138.7 103 60.2
GSVIVG01032273001 Vitis vinifera HOM05D002866 ORTHO05D008706 9.9e-28 128.6 95 70.5
BcaNung07329 Brassica carinata HOM05D002866 ORTHO05D008706 7.8e-25 119.0 85 68.2
SEGI_06793 Sequoiadendron giganteum HOM05D002866 ORTHO05D014815 2.4e-10 70.9 125 37.6
Cfa024407 Carpinus fangiana HOM05D006418 ORTHO05D008063 3.2e-10 70.5 163 31.9
GSVIVG01006058001 Vitis vinifera HOM05D002866 ORTHO05D441252 3.5e-09 67.0 39 84.6
GSVIVG01005989001 Vitis vinifera HOM05D002866 ORTHO05D440186 7.8e-09 65.9 39 82.1
Lj9A174G23 Lonicera japonica HOM05D002866 ORTHO05D234197 1.6e-06 58.2 116 35.3


User provided reference genes

Program Settings