Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 1.7e-89 332.8 186 100.0
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 3.5e-79 298.5 187 92.5
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 9.7e-61 237.3 189 73.0
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 5.1e-54 214.9 193 68.9
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 8.8e-54 214.2 179 68.7
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 6.3e-52 208.0 190 65.8
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 3.1e-51 205.7 188 64.4
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 5.3e-51 204.9 189 64.0
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 1.3e-49 200.3 187 63.1
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 9.4e-48 194.1 186 61.8
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 3.6e-47 192.2 184 63.0
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 4.7e-47 191.8 184 61.4
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 3.9e-46 188.7 186 61.3
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 5.2e-46 188.3 198 60.1
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 5.2e-46 188.3 189 61.9
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 6.7e-46 188.0 181 61.3
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 8.8e-46 187.6 181 62.4
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 1.5e-45 186.8 186 60.8
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 3.3e-45 185.7 179 63.7
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 4.4e-45 185.3 189 60.8
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 5.7e-45 184.9 183 60.7
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 5.7e-45 184.9 188 58.0
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 1.7e-44 183.3 184 58.7
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 8.2e-44 181.0 179 60.9
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 1.4e-43 180.3 184 60.3
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 1.4e-43 180.3 184 60.3
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 1.4e-43 180.3 175 62.3
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 2.4e-43 179.5 190 59.5
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 4.1e-43 178.7 183 60.1
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 7.0e-43 177.9 171 62.0
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 9.1e-43 177.6 200 55.5
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 9.1e-43 177.6 185 55.7
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 5.9e-42 174.9 185 55.7
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.0e-41 174.1 184 57.6
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 2.2e-41 172.9 187 56.1
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 5.0e-41 171.8 172 61.6
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 2.5e-40 169.5 187 57.2
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 3.2e-40 169.1 186 54.3
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 9.4e-40 167.5 185 52.4
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 1.2e-39 167.2 189 54.5
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 1.6e-39 166.8 185 56.8
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 2.1e-39 166.4 181 55.2
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 2.7e-39 166.0 185 54.1
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 8.0e-39 164.5 185 51.9
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 1.4e-38 163.7 187 55.6
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 5.2e-38 161.8 192 56.2
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 8.8e-38 161.0 180 55.6
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 1.2e-37 160.6 180 56.1
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 2.6e-37 159.5 180 55.0
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 1.3e-36 157.1 181 52.5
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 1.7e-36 156.8 192 51.0
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.8e-36 156.0 178 54.5
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 2.8e-36 156.0 182 53.3
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 4.8e-36 155.2 183 54.1
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 8.3e-36 154.5 186 47.8
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 1.4e-35 153.7 187 54.5
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 1.8e-35 153.3 191 47.6
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 2.4e-35 152.9 178 54.5
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.4e-35 152.9 184 53.3
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 4.1e-35 152.1 178 54.5
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 4.1e-35 152.1 204 47.1
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 1.6e-34 150.2 181 49.2
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 5.9e-34 148.3 180 52.2
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 7.7e-34 147.9 188 49.5
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 2.2e-33 146.4 181 49.7
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 2.2e-33 146.4 183 51.9
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 1.1e-32 144.1 181 47.5
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.9e-32 143.3 190 47.9
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 2.5e-32 142.9 184 50.0
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 9.4e-32 141.0 178 47.8
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 3.6e-31 139.0 187 49.7
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 6.1e-31 138.3 182 49.5
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 6.1e-31 138.3 185 49.7
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 8.0e-31 137.9 172 52.9
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 1.8e-30 136.7 185 47.6
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 2.3e-30 136.3 182 48.9
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 4.0e-30 135.6 178 52.8
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 5.2e-30 135.2 166 53.6
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.2e-29 134.0 184 47.3
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 5.7e-29 131.7 186 52.7
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 5.7e-29 131.7 148 57.4
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 7.5e-29 131.3 183 47.0
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 7.5e-29 131.3 155 54.2
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 7.5e-29 131.3 182 48.9
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 1.7e-28 130.2 183 47.5
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 1.7e-28 130.2 171 53.2
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 4.8e-28 128.6 183 46.4
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 6.3e-28 128.3 182 48.4
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 6.3e-28 128.3 182 48.4
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 8.3e-28 127.9 183 46.4
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 1.1e-27 127.5 183 46.4
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 1.4e-27 127.1 179 48.0
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 1.4e-27 127.1 153 54.2
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 1.8e-27 126.7 182 47.8
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 1.8e-27 126.7 180 47.8
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 3.1e-27 125.9 183 45.9
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 3.1e-27 125.9 182 46.7
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 3.1e-27 125.9 183 45.4
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 4.1e-27 125.6 158 48.7
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 5.4e-27 125.2 182 47.3
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 5.4e-27 125.2 182 47.3
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 5.4e-27 125.2 182 47.8
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 5.4e-27 125.2 182 47.8
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 5.4e-27 125.2 188 47.3
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 1.2e-26 124.0 183 47.0
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 1.6e-26 123.6 182 46.7
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 1.6e-26 123.6 182 46.7
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 2.0e-26 123.2 192 45.8
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 2.0e-26 123.2 180 46.7
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 2.0e-26 123.2 180 46.7
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 2.0e-26 123.2 153 51.6
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 5.9e-26 121.7 187 43.9
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 7.7e-26 121.3 158 46.2
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 2.9e-25 119.4 156 48.7
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 3.8e-25 119.0 187 44.4
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 8.6e-25 117.9 191 42.4
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 1.1e-24 117.5 177 45.8
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 2.1e-23 113.2 178 44.4
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 3.6e-23 112.5 169 43.8
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 1.4e-22 110.5 179 45.3
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 1.8e-22 110.2 173 42.8
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 5.2e-22 108.6 185 40.5
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 8.9e-22 107.8 165 43.6
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 9.8e-21 104.4 158 44.9
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 3.7e-20 102.4 178 41.0
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 3.7e-20 102.4 175 40.6
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 3.7e-20 102.4 179 41.3
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 4.9e-20 102.1 85 64.7
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 8.3e-20 101.3 179 42.5
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 2.4e-19 99.8 179 42.5
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 2.4e-19 99.8 179 42.5
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 5.4e-19 98.6 179 41.9
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 5.4e-19 98.6 179 41.9
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 9.2e-19 97.8 179 40.2
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 2.0e-18 96.7 155 42.6
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 2.7e-18 96.3 179 41.3
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.3e-17 94.0 142 45.8
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 3.9e-17 92.4 188 39.4
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 6.6e-17 91.7 179 38.5
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 2.5e-16 89.7 86 54.7
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 1.6e-15 87.0 175 38.3
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 1.0e-14 84.3 187 34.2
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 7.5e-13 78.2 184 31.5
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.3e-12 77.4 179 36.3
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.4e-11 73.9 181 30.9
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 7.0e-11 71.6 183 31.1
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 1.6e-10 70.5 97 48.5
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 6.0e-10 68.6 46 71.7
Zm00001eb178020 Zea mays HOM05D004507 ORTHO05D004874 3.0e-09 66.2 183 27.3
CDE02G3054 Ceratophyllum demersum HOM05D001966 ORTHO05D011119 3.9e-09 65.9 88 39.8
SEGI_00453 Sequoiadendron giganteum HOM05D001624 ORTHO05D001530 2.8e-07 59.7 179 29.6
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 4.7e-07 58.9 160 29.4
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 6.2e-07 58.5 180 30.0
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 8.0e-07 58.2 176 30.7
BcaB01g04486 Brassica carinata HOM05D004507 ORTHO05D004874 1.4e-06 57.4 87 35.6
SEGI_22868 Sequoiadendron giganteum HOM05D001624 ORTHO05D001530 1.4e-06 57.4 177 32.2
Zm00001eb233860 Zea mays HOM05D004507 ORTHO05D004874 1.8e-06 57.0 209 29.2
unitig_37.g12687 Utricularia gibba HOM05D004507 ORTHO05D004874 2.3e-06 56.6 76 42.1
SEGI_25117 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 3.1e-06 56.2 192 28.6
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 5.2e-06 55.5 186 30.1
ATR0693G249 Amborella trichopoda HOM05D001624 ORTHO05D001530 8.9e-06 54.7 166 30.1
SEGI_14977 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 8.9e-06 54.7 185 28.1


User provided reference genes

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