Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013520 Carpinus fangiana HOM05D000306 ORTHO05D007657 0.0e+00 1170.2 579 100.0
Haze_22120 Corylus avellana HOM05D000306 ORTHO05D007657 6.7e-310 1066.6 628 86.9
QL02p097271 Quercus lobata HOM05D000306 ORTHO05D007657 2.2e-297 1025.0 621 83.6
CiPaw.07G190000 Carya illinoinensis HOM05D000306 ORTHO05D007657 3.4e-290 1001.1 618 82.0
Prupe.1G089400 Prunus persica HOM05D000306 ORTHO05D007657 2.9e-281 971.5 625 78.9
Cpa.g.sc95.65 Carica papaya HOM05D000306 ORTHO05D007657 4.4e-277 957.6 626 77.5
Dinv42746 Davidia involucrata HOM05D000306 ORTHO05D007657 2.8e-276 954.9 626 78.6
Dinv43355 Davidia involucrata HOM05D000306 ORTHO05D007657 2.8e-276 954.9 626 78.6
FvH4_4g09080 Fragaria vesca HOM05D000306 ORTHO05D007657 6.3e-276 953.7 618 78.0
Manes.06G026700 Manihot esculenta HOM05D000306 ORTHO05D007657 2.4e-275 951.8 629 76.8
FAN22G1929 Fragaria x ananassa HOM05D000306 ORTHO05D007657 7.0e-275 950.3 637 75.8
Rhsim01G0007000 Rhododendron simsii HOM05D000306 ORTHO05D007657 4.5e-274 947.6 647 74.7
Actinidia17107 Actinidia chinensis HOM05D000306 ORTHO05D007657 7.7e-274 946.8 620 77.6
Sabra18G0081600 Salix brachista HOM05D000306 ORTHO05D007657 1.1e-272 943.0 641 75.0
Potri.018G095700 Populus trichocarpa HOM05D000306 ORTHO05D007657 1.9e-272 942.2 626 76.2
GSVIVG01029150001 Vitis vinifera HOM05D000306 ORTHO05D007657 2.7e-271 938.3 589 79.3
FAN12G4153 Fragaria x ananassa HOM05D000306 ORTHO05D007657 1.0e-270 936.4 679 71.4
CSS0004024 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 2.3e-270 935.3 623 76.2
Hma1.2p1_3301F.1_g335020 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 2.0e-269 932.2 575 81.2
MD13G1267100 Malus domestica HOM05D000306 ORTHO05D007657 9.1e-267 923.3 637 74.3
CsaV3_2G008000 Cucumis sativus L. HOM05D000306 ORTHO05D007657 1.0e-265 919.8 618 73.9
vmacro13107 Vaccinium macrocarpon HOM05D000306 ORTHO05D007657 1.1e-264 916.4 726 67.4
Nn2g12665 Nelumbo nucifera HOM05D000306 ORTHO05D007657 2.5e-264 915.2 619 74.5
PGR142G2969 Punica granatum HOM05D000306 ORTHO05D007657 4.2e-264 914.4 625 75.2
CANSAT11G0744 Cannabis sativa HOM05D000306 ORTHO05D007657 9.4e-264 913.3 632 73.3
THA.LOC104803506 Tarenaya hassleriana HOM05D000306 ORTHO05D007657 2.1e-263 912.1 624 74.2
Aqoxy7G03118 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 2.7e-263 911.8 617 75.5
Thhalv10024769m.g Eutrema salsugineum HOM05D000306 ORTHO05D007657 2.7e-263 911.8 575 77.9
Gorai.009G006500 Gossypium raimondii HOM05D000306 ORTHO05D007657 8.0e-263 910.2 638 73.2
AL7G21840 Arabidopsis lyrata HOM05D000306 ORTHO05D007657 1.4e-262 909.4 575 77.6
Eucgr.C00188 Eucalyptus grandis HOM05D000306 ORTHO05D007657 1.8e-262 909.1 581 77.6
Carub.0007s1029 Capsella rubella HOM05D000306 ORTHO05D007657 2.3e-262 908.7 575 77.2
ClCG11G012530 Citrullus lanatus HOM05D000306 ORTHO05D007657 2.3e-262 908.7 654 70.6
PSO063G6265 Papaver somniferum HOM05D000306 ORTHO05D007657 6.8e-262 907.1 577 78.0
PSO782G2546 Papaver somniferum HOM05D000306 ORTHO05D007657 1.2e-261 906.4 577 77.8
TWI34G1080 Tripterygium wilfordii HOM05D000306 ORTHO05D007657 1.2e-261 906.4 628 73.9
Ciclev10007754m.g Citrus clementina HOM05D000306 ORTHO05D007657 2.0e-261 905.6 631 73.5
Gohir.D05G006400 Gossypium hirsutum HOM05D000306 ORTHO05D007657 5.7e-261 904.0 636 73.1
Sp7g28180 Schrenkiella parvula HOM05D000306 ORTHO05D007657 7.5e-261 903.7 575 76.9
Oeu042129.1 Olea europaea HOM05D000306 ORTHO05D007657 9.8e-261 903.3 625 73.6
A03p59750 Brassica napus HOM05D000306 ORTHO05D007657 4.1e-259 897.9 583 76.3
BolC7t46241H Brassica oleracea HOM05D000306 ORTHO05D007657 5.4e-259 897.5 583 76.3
BraA03t15029Z Brassica rapa HOM05D000306 ORTHO05D007657 7.0e-259 897.1 583 76.3
C07p57810 Brassica napus HOM05D000306 ORTHO05D007657 9.1e-259 896.7 583 76.2
RcHm_v2.0_Chr4g0403081 Rosa chinensis HOM05D000306 ORTHO05D007657 1.3e-257 892.9 607 75.1
Migut.J01462 Erythranthe guttata HOM05D000306 ORTHO05D007657 9.5e-256 886.7 611 73.8
FAN17G2452 Fragaria x ananassa HOM05D000306 ORTHO05D007657 1.2e-255 886.3 625 72.8
Sed0007717 Sechium edule HOM05D000306 ORTHO05D007657 4.7e-255 884.4 613 73.9
Solyc07g006780.3 Solanum lycopersicum HOM05D000306 ORTHO05D007657 4.7e-255 884.4 621 72.3
arahy.Tifrunner.gnm1.ann1.2QW3Q9 Arachis hypogaea HOM05D000306 ORTHO05D007657 1.0e-254 883.2 628 73.6
Cc06_g13490 Coffea canephora HOM05D000306 ORTHO05D007657 3.0e-254 881.7 623 71.7
Peaxi162Scf00050g00633 Petunia axillaris HOM05D000306 ORTHO05D007657 3.0e-254 881.7 615 71.9
Sopen07g002880 Solanum pennellii HOM05D000306 ORTHO05D007657 8.9e-254 880.2 617 72.4
Nitab4.5_0000937g0030 Nicotiana tabacum HOM05D000306 ORTHO05D007657 1.5e-253 879.4 616 72.6
HanXRQChr03g0068931 Helianthus annuus HOM05D000306 ORTHO05D007657 2.0e-253 879.0 619 72.2
PGSC0003DMG400018753 Solanum tuberosum HOM05D000306 ORTHO05D007657 3.4e-253 878.2 620 71.6
CAN.G584.11 Capsicum annuum HOM05D000306 ORTHO05D007657 4.4e-253 877.9 630 71.0
Nitab4.5_0000244g0290 Nicotiana tabacum HOM05D000306 ORTHO05D007657 5.7e-253 877.5 616 72.9
BcaNung00538 Brassica carinata HOM05D000306 ORTHO05D007657 2.8e-252 875.2 576 76.4
CDE04G1293 Ceratophyllum demersum HOM05D000306 ORTHO05D007657 6.3e-252 874.0 591 73.4
EL10Ac8g18267 Beta vulgaris HOM05D000306 ORTHO05D007657 1.4e-251 872.8 621 70.0
VMungo1215G2115 Vigna mungo HOM05D000306 ORTHO05D007657 2.0e-250 869.0 589 75.2
Lsat_1_v5_gn_7_54281 Lactuca sativa HOM05D000306 ORTHO05D007657 4.5e-250 867.8 582 74.7
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 3.9e-249 864.8 585 73.2
Glyma.17G065600 Glycine max HOM05D000306 ORTHO05D007657 8.6e-249 863.6 618 72.0
ATR0580G308 Amborella trichopoda HOM05D000306 ORTHO05D007657 2.1e-247 859.0 616 70.5
Hund00645 Selenicereus undatus HOM05D000306 ORTHO05D007657 1.0e-246 856.7 696 63.2
HPP92_013461 Vanilla planifolia HOM05D000306 ORTHO05D007657 6.8e-246 854.0 597 71.5
Gohir.A05G005700 Gossypium hirsutum HOM05D000306 ORTHO05D007657 3.4e-245 851.7 598 72.9
Lj4g0000904 Lotus japonicus HOM05D000306 ORTHO05D007657 4.4e-245 851.3 600 73.0
Zm00001eb069070 Zea mays HOM05D000306 ORTHO05D007657 1.3e-244 849.7 570 73.7
Lalb_Chr07g0180291 Lupinus albus HOM05D000306 ORTHO05D007657 1.4e-243 846.3 590 73.4
Duzib150G0020 Durio zibethinus HOM05D000306 ORTHO05D007657 2.4e-243 845.5 637 69.9
MBI16_g41815_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D007657 1.2e-242 843.2 609 71.1
Sc14g0001220 Simmondsia chinensis HOM05D000306 ORTHO05D007657 6.0e-242 840.9 591 73.6
TAR383G0632 Trochodendron aralioides HOM05D000306 ORTHO05D007657 7.8e-242 840.5 496 83.5
Phvul.003G148000 Phaseolus vulgaris HOM05D000306 ORTHO05D007657 1.0e-241 840.1 589 72.7
Ca_21206_v3 Cicer arietinum L. HOM05D000306 ORTHO05D007657 2.3e-241 839.0 585 73.7
Hma1.2p1_1423F.1_g282590 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 3.0e-241 838.6 579 74.6
Medtr4g128640 Medicago truncatula HOM05D000306 ORTHO05D007657 1.2e-239 833.2 585 73.2
AUR62040301 Chenopodium quinoa HOM05D000306 ORTHO05D007657 1.6e-239 832.8 594 70.5
AUR62039995 Chenopodium quinoa HOM05D000306 ORTHO05D007657 2.8e-239 832.0 603 69.2
Atru.chr7.723 Acer truncatum HOM05D000306 ORTHO05D007657 1.1e-238 830.1 504 81.7
Aa31LG2G20220 Aethionema arabicum HOM05D000306 ORTHO05D007657 3.0e-225 785.4 538 71.6
Glyma.13G094600 Glycine max HOM05D000306 ORTHO05D007657 1.2e-223 780.0 552 71.7
ECA240G0310 Erigeron canadensis HOM05D000306 ORTHO05D007657 2.2e-220 769.2 629 63.9
Psat4g012000 Pisum sativum HOM05D000306 ORTHO05D007657 2.1e-215 752.7 463 80.3
Mapoly0003s0282 Marchantia polymorpha HOM05D000306 ORTHO05D007657 1.8e-214 749.6 605 61.2
Thecc.09G168500 Theobroma cacao HOM05D000306 ORTHO05D007657 6.0e-210 734.6 466 78.1
SGA_v2.0_scaffold69G23280 Striga asiatica HOM05D000306 ORTHO05D007657 9.6e-208 727.2 477 75.7
Pp3c23_15560 Physcomitrium patens HOM05D000306 ORTHO05D007657 2.6e-205 719.2 575 62.8
AT4G30310 Arabidopsis thaliana HOM05D000306 ORTHO05D007657 7.1e-203 711.1 466 74.9
TPR.G5313 Trifolium pratense HOM05D000306 ORTHO05D007657 1.4e-198 696.8 491 71.3
DCAR_020115 Daucus carota HOM05D000306 ORTHO05D007657 2.6e-181 639.4 444 72.7
Lj9A688T83 Lonicera japonica HOM05D000306 ORTHO05D007657 6.1e-178 628.2 469 68.7
Hma1.2p1_0342F.1_g130620 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 1.6e-170 603.6 604 57.5
RcHm_v2.0_Chr4g0405011 Rosa chinensis HOM05D000306 ORTHO05D007657 4.8e-167 592.0 424 71.5
CARHR238220 Cardamine hirsuta HOM05D000306 ORTHO05D007657 1.4e-166 590.5 403 73.2
Hund00646 Selenicereus undatus HOM05D000306 ORTHO05D007657 2.4e-166 589.7 633 52.9
AagrBONN_evm.TU.Sc2ySwM_117.626 Anthoceros agrestis HOM05D000306 ORTHO05D007657 1.9e-163 580.1 535 56.4
SMO239G0169 Selaginella moellendorffii HOM05D000306 ORTHO05D007657 6.1e-146 521.9 453 58.5
MELO3C004085.2 Cucumis melo HOM05D000306 ORTHO05D007657 4.1e-134 482.6 618 46.9
Os02g0177900 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D007657 1.3e-127 461.1 355 66.5
SEGI_13713 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 2.9e-127 459.9 292 72.3
Nn2g14416 Nelumbo nucifera HOM05D000306 ORTHO05D007657 5.0e-124 449.1 239 87.0
Nn8g40502 Nelumbo nucifera HOM05D000306 ORTHO05D007657 3.6e-122 443.0 317 71.6
SHI02941 Sapria himalayana HOM05D000306 ORTHO05D007657 2.3e-116 423.7 269 76.2
Aqoxy3G01085 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.1e-115 421.4 258 79.5
Haze_26997 Corylus avellana HOM05D000306 ORTHO05D007657 4.1e-110 402.9 568 42.1
CSS0008880 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 1.8e-84 317.8 240 69.2
Cfa026537 Carpinus fangiana HOM05D000306 ORTHO05D007657 1.5e-83 314.7 610 34.3
Aqoxy1G02891 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 3.7e-82 310.1 225 70.2
Aqoxy3G01524 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 7.1e-78 295.8 181 78.5
Lj9A687T77 Lonicera japonica HOM05D000306 ORTHO05D007657 4.8e-74 283.1 194 73.7
Aqoxy1G03516 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 8.2e-58 229.2 193 65.8
MELO3C000682.2 Cucumis melo HOM05D000306 ORTHO05D007657 1.7e-55 221.5 125 84.0
HanXRQChr09g0255811 Helianthus annuus HOM05D000306 ORTHO05D007657 6.1e-53 213.0 125 81.6
SEGI_25583 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 6.7e-52 209.5 134 72.4
arahy.Tifrunner.gnm1.ann1.ID2I7H Arachis hypogaea HOM05D000306 ORTHO05D007657 7.0e-49 199.5 128 76.6
Aqoxy3G01525 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 3.5e-40 170.6 88 88.6
Cre12.g543902 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D007657 1.3e-34 152.1 483 29.6
QL02p086401 Quercus lobata HOM05D000306 ORTHO05D007657 1.5e-30 138.7 81 84.0
QL02p097096 Quercus lobata HOM05D000306 ORTHO05D007657 1.8e-28 131.7 81 80.2
MCO11G321 Micromonas commoda HOM05D002248 ORTHO05D006121 2.2e-26 124.8 480 26.9
DCAR_020114 Daucus carota HOM05D000306 ORTHO05D007657 6.3e-26 123.2 120 56.7
MELO3C028573.2 Cucumis melo HOM05D000306 ORTHO05D007657 3.5e-24 117.5 89 64.0
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 3.5e-24 117.5 486 27.2
arahy.Tifrunner.gnm1.ann1.MK7H36 Arachis hypogaea HOM05D000306 ORTHO05D007657 1.0e-23 115.9 64 78.1
QL02p097130 Quercus lobata HOM05D000306 ORTHO05D007657 2.5e-22 111.3 65 86.2
CAN.G790.37 Capsicum annuum HOM05D000306 ORTHO05D007657 3.7e-18 97.4 55 78.2
RcHm_v2.0_Chr4g0405021 Rosa chinensis HOM05D000306 ORTHO05D030075 6.6e-15 86.7 59 74.6
arahy.Tifrunner.gnm1.ann1.QZT5UT Arachis hypogaea HOM05D000200 ORTHO05D010534 2.3e-12 78.2 50 76.0
TPR.G18960 Trifolium pratense HOM05D000306 ORTHO05D007657 3.1e-12 77.8 49 79.6
TPR.G20440 Trifolium pratense HOM05D000306 ORTHO05D050985 6.4e-10 70.1 41 82.9
SEGI_29302 Sequoiadendron giganteum HOM05D000306 ORTHO05D050985 1.6e-08 65.5 41 73.2
QL02p097186 Quercus lobata HOM05D000306 ORTHO05D030075 3.5e-08 64.3 42 76.2
MD07G1169000 Malus domestica HOM05D000306 ORTHO05D030075 6.0e-08 63.5 46 73.9
SEGI_34135 Sequoiadendron giganteum HOM05D000306 ORTHO05D030075 1.0e-07 62.8 44 72.7
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 3.3e-06 57.8 28 92.9


User provided reference genes

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