Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 0.0e+00 1208.4 644 100.0
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 0.0e+00 1184.1 644 97.5
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 4.8e-301 1037.3 650 82.9
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 5.5e-281 970.7 656 78.8
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 3.2e-268 928.3 659 73.9
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 9.2e-268 926.8 659 75.0
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 2.3e-266 922.2 647 72.8
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 5.0e-266 921.0 654 74.6
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 5.6e-265 917.5 651 73.0
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 1.2e-264 916.4 651 72.8
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 2.1e-264 915.6 656 74.2
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 4.7e-264 914.4 656 74.1
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 1.1e-263 913.3 652 73.2
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.8e-263 912.5 654 74.2
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 2.3e-263 912.1 644 73.6
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 3.1e-263 911.8 645 73.3
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 1.2e-262 909.8 651 72.5
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 7.5e-262 907.1 657 72.6
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 9.8e-262 906.7 646 72.9
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 9.8e-262 906.7 646 72.9
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 1.6e-259 899.4 645 73.0
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 3.5e-259 898.3 648 72.2
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 4.6e-259 897.9 645 73.2
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 7.8e-259 897.1 645 73.0
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 1.1e-257 893.3 653 71.7
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 3.3e-257 891.7 637 74.9
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 4.3e-257 891.3 651 71.4
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 4.3e-257 891.3 649 73.0
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 5.6e-257 891.0 663 72.1
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 4.7e-256 887.9 649 71.8
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 2.3e-255 885.6 663 71.8
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 3.1e-255 885.2 647 71.9
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 4.0e-255 884.8 647 72.2
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 4.0e-255 884.8 646 72.0
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 8.9e-255 883.6 648 71.9
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 1.2e-254 883.2 648 71.5
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 3.4e-254 881.7 645 73.0
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 2.2e-253 879.0 645 72.6
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 6.4e-253 877.5 648 72.4
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 3.5e-251 871.7 649 70.7
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 3.5e-251 871.7 652 70.6
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 3.5e-251 871.7 651 70.4
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 4.6e-251 871.3 651 70.2
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 1.0e-250 870.2 633 74.2
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 1.1e-249 866.7 655 68.9
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 3.3e-249 865.1 647 70.0
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 4.3e-249 864.8 655 68.9
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 5.6e-249 864.4 645 71.2
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 7.3e-249 864.0 634 72.4
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 1.4e-247 859.8 631 72.7
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 3.1e-247 858.6 651 69.6
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 1.2e-246 856.7 631 71.8
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 1.5e-246 856.3 627 74.2
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 1.5e-246 856.3 648 71.3
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 2.9e-245 852.0 648 70.8
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 1.6e-243 846.3 657 67.3
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 1.6e-243 846.3 642 70.2
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 6.0e-243 844.3 649 69.3
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 6.0e-243 844.3 648 69.3
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 1.7e-242 842.8 663 67.1
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 2.3e-242 842.4 651 68.8
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 6.6e-242 840.9 647 70.2
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 1.1e-241 840.1 667 66.4
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 1.1e-241 840.1 669 65.9
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 1.5e-241 839.7 658 67.6
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 1.9e-241 839.3 658 66.9
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 3.3e-241 838.6 659 66.8
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 3.3e-241 838.6 657 66.8
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 4.3e-241 838.2 657 67.3
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 5.6e-241 837.8 660 66.7
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 1.2e-240 836.6 657 67.0
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 3.6e-240 835.1 648 69.8
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 6.2e-240 834.3 655 67.6
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 8.1e-240 833.9 656 67.5
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 2.4e-239 832.4 661 66.4
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 2.4e-239 832.4 658 66.6
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 9.0e-239 830.5 657 68.0
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 9.0e-239 830.5 606 72.6
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 2.0e-238 829.3 659 66.8
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 2.6e-238 828.9 661 66.6
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 3.4e-238 828.6 663 66.4
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 1.7e-237 826.2 649 67.5
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 4.9e-237 824.7 600 71.7
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 1.1e-236 823.5 653 68.0
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 4.2e-236 821.6 650 66.6
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 4.6e-235 818.1 651 67.0
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 1.3e-234 816.6 651 67.9
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 1.3e-234 816.6 656 66.8
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 2.3e-234 815.8 656 66.6
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 2.3e-234 815.8 656 66.6
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 3.0e-234 815.5 649 68.9
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 6.6e-234 814.3 654 66.2
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 9.6e-233 810.4 650 66.6
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 3.1e-231 805.4 655 66.4
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 1.5e-230 803.1 641 66.8
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 2.2e-229 799.3 661 65.1
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 8.4e-229 797.3 657 65.4
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 4.2e-228 795.0 640 66.7
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.6e-227 793.1 651 65.6
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.3e-226 789.3 640 66.6
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 4.9e-221 771.5 654 64.1
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 6.4e-221 771.2 654 63.9
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 1.1e-220 770.4 656 64.3
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 2.7e-219 765.8 654 63.0
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.0e-218 762.3 645 62.0
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 3.9e-218 761.9 640 63.6
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 6.2e-216 754.6 645 64.8
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 3.9e-210 735.3 650 61.7
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 4.3e-201 705.3 648 59.7
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 4.5e-198 695.3 629 62.0
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 5.0e-197 691.8 650 60.0
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 2.0e-193 679.9 653 58.8
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 4.4e-193 678.7 655 57.1
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 2.4e-191 672.9 651 56.2
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 3.1e-191 672.5 639 59.9
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 5.9e-190 668.3 638 60.2
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.0e-189 667.5 546 66.8
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 4.0e-170 602.4 626 55.4
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 4.4e-169 599.0 648 53.5
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 7.0e-159 565.1 551 59.5
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 3.2e-151 539.7 637 51.5
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 3.2e-143 513.1 668 46.7
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 1.1e-138 498.0 665 45.1
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 1.3e-128 464.5 674 43.6
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 1.3e-115 421.4 364 62.1
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 9.6e-108 395.2 327 66.4
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 6.7e-93 345.9 385 51.2
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 2.9e-88 330.5 242 66.5
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 9.1e-66 255.8 302 50.7
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 1.2e-41 175.6 115 80.9
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 3.1e-37 161.0 112 68.8
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 4.0e-37 160.6 565 27.4
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 2.0e-20 105.1 116 53.4
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 3.8e-11 74.3 44 81.8
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 4.9e-11 73.9 95 50.5
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 3.2e-10 71.2 106 42.5
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 5.1e-08 63.9 51 56.9
CDE04G1231 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 2.5e-07 61.6 49 65.3


User provided reference genes

Program Settings