Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013503 Carpinus fangiana HOM05D007223 ORTHO05D008932 8.2e-85 317.0 158 100.0
Haze_22095 Corylus avellana HOM05D007223 ORTHO05D008932 8.8e-63 243.8 135 90.4
QL02p097776 Quercus lobata HOM05D007223 ORTHO05D008932 5.2e-55 218.0 167 71.9
CiPaw.08G036200 Carya illinoinensis HOM05D007223 ORTHO05D008932 1.1e-54 216.9 157 76.4
Thecc.09G177700 Theobroma cacao HOM05D007223 ORTHO05D008932 1.1e-54 216.9 172 68.6
Gohir.A08G084300 Gossypium hirsutum HOM05D007223 ORTHO05D008932 1.5e-54 216.5 168 69.6
Gorai.004G099600 Gossypium raimondii HOM05D007223 ORTHO05D008932 1.3e-53 213.4 170 69.4
CSS0040203 Camellia sinensis var. sinensis HOM05D007223 ORTHO05D008932 2.8e-53 212.2 180 67.2
Gohir.D08G093900 Gossypium hirsutum HOM05D007223 ORTHO05D008932 6.3e-53 211.1 170 68.8
Duzib168G2276 Durio zibethinus HOM05D007223 ORTHO05D008932 1.1e-52 210.3 173 68.2
Duzib170G0975 Durio zibethinus HOM05D007223 ORTHO05D008932 7.0e-52 207.6 170 66.5
MD13G1253600 Malus domestica HOM05D007223 ORTHO05D008932 6.5e-50 201.1 164 68.9
Ciclev10010470m.g Citrus clementina HOM05D007223 ORTHO05D008932 8.5e-50 200.7 123 79.7
RcHm_v2.0_Chr4g0402441 Rosa chinensis HOM05D007223 ORTHO05D008932 1.1e-49 200.3 162 67.9
Cpa.g.sc233.11 Carica papaya HOM05D007223 ORTHO05D008932 1.5e-49 199.9 174 63.2
Prupe.1G085900 Prunus persica HOM05D007223 ORTHO05D008932 1.9e-49 199.5 161 67.1
Potri.006G166900 Populus trichocarpa HOM05D007223 ORTHO05D008932 2.7e-48 195.7 167 64.7
Lalb_Chr07g0180471 Lupinus albus HOM05D007223 ORTHO05D008932 3.6e-48 195.3 162 64.8
THA.LOC104813522 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 4.7e-48 194.9 155 66.5
Manes.14G153900 Manihot esculenta HOM05D007223 ORTHO05D008932 6.1e-48 194.5 161 67.1
Dinv41246 Davidia involucrata HOM05D007223 ORTHO05D008932 8.0e-48 194.1 178 60.1
Sabra06G0129600 Salix brachista HOM05D007223 ORTHO05D008932 1.0e-47 193.7 164 65.9
Atru.chr7.623 Acer truncatum HOM05D007223 ORTHO05D008932 1.4e-47 193.4 119 84.0
FAN17G0481 Fragaria x ananassa HOM05D007223 ORTHO05D008932 1.4e-47 193.4 160 65.6
Dinv42721 Davidia involucrata HOM05D007223 ORTHO05D008932 3.0e-47 192.2 176 61.4
Dinv43380 Davidia involucrata HOM05D007223 ORTHO05D008932 3.0e-47 192.2 176 61.4
Cc06_g13230 Coffea canephora HOM05D007223 ORTHO05D008932 4.0e-47 191.8 178 59.6
FAN07G1685 Fragaria x ananassa HOM05D007223 ORTHO05D008932 4.0e-47 191.8 160 67.5
FAN22G1200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 4.0e-47 191.8 160 66.9
Phvul.003G145600 Phaseolus vulgaris HOM05D007223 ORTHO05D008932 5.2e-47 191.4 168 64.3
Sp6g19140 Schrenkiella parvula HOM05D007223 ORTHO05D008932 6.8e-47 191.0 177 61.6
Thhalv10015874m.g Eutrema salsugineum HOM05D007223 ORTHO05D008932 1.2e-46 190.3 178 61.8
TAR383G1061 Trochodendron aralioides HOM05D007223 ORTHO05D008932 1.2e-46 190.3 175 61.1
FAN12G3200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 1.5e-46 189.9 161 65.8
Actinidia04146 Actinidia chinensis HOM05D007223 ORTHO05D008932 2.6e-46 189.1 155 64.5
FvH4_4g08200 Fragaria vesca HOM05D007223 ORTHO05D008932 3.4e-46 188.7 161 65.8
BcaB08g36098 Brassica carinata HOM05D007223 ORTHO05D008932 1.3e-45 186.8 156 66.7
arahy.Tifrunner.gnm1.ann1.LBMC6N Arachis hypogaea HOM05D007223 ORTHO05D008932 1.7e-45 186.4 179 60.9
GSVIVG01029215001 Vitis vinifera HOM05D007223 ORTHO05D008932 2.2e-45 186.0 154 64.9
arahy.Tifrunner.gnm1.ann1.1E3WXN Arachis hypogaea HOM05D007223 ORTHO05D008932 2.8e-45 185.7 182 59.9
Eucgr.C02329 Eucalyptus grandis HOM05D007223 ORTHO05D008932 3.7e-45 185.3 177 58.8
AL8G33400 Arabidopsis lyrata HOM05D007223 ORTHO05D008932 6.3e-45 184.5 176 59.7
BcaC04g19969 Brassica carinata HOM05D007223 ORTHO05D008932 8.3e-45 184.1 138 71.0
Oeu042168.1 Olea europaea HOM05D007223 ORTHO05D008932 1.4e-44 183.3 171 63.7
AT5G57420 Arabidopsis thaliana HOM05D007223 ORTHO05D008932 1.8e-44 183.0 176 59.1
CARHR271220 Cardamine hirsuta HOM05D007223 ORTHO05D008932 2.4e-44 182.6 175 58.3
Peaxi162Scf00231g00621 Petunia axillaris HOM05D007223 ORTHO05D008932 3.1e-44 182.2 175 57.1
Nn8g40486 Nelumbo nucifera HOM05D007223 ORTHO05D008932 7.0e-44 181.0 132 71.2
Carub.0008s1794 Capsella rubella HOM05D007223 ORTHO05D008932 1.2e-43 180.3 178 59.0
BcaB05g22346 Brassica carinata HOM05D007223 ORTHO05D008932 1.6e-43 179.9 155 65.2
C02p14240 Brassica napus HOM05D007223 ORTHO05D008932 3.5e-43 178.7 177 57.6
BolC2t07548H Brassica oleracea HOM05D007223 ORTHO05D008932 3.5e-43 178.7 177 57.6
Potri.018G092300 Populus trichocarpa HOM05D007223 ORTHO05D008932 4.5e-43 178.3 168 61.9
Lj4g0003272 Lotus japonicus HOM05D007223 ORTHO05D008932 5.9e-43 177.9 169 60.9
BraA02t05920Z Brassica rapa HOM05D007223 ORTHO05D008932 7.7e-43 177.6 136 69.9
A02p08480 Brassica napus HOM05D007223 ORTHO05D008932 1.0e-42 177.2 136 69.9
MSTRG.6217 Avicennia marina HOM05D007223 ORTHO05D008932 1.3e-42 176.8 186 57.5
THA.LOC104817792 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 1.3e-42 176.8 122 76.2
TAR625G0650 Trochodendron aralioides HOM05D007223 ORTHO05D008932 2.9e-42 175.6 170 60.0
Rhsim01G0004500 Rhododendron simsii HOM05D007223 ORTHO05D008932 6.5e-42 174.5 155 63.9
TPR.G5371 Trifolium pratense HOM05D007223 ORTHO05D008932 1.1e-41 173.7 159 62.9
Medtr4g128070 Medicago truncatula HOM05D007223 ORTHO05D008932 1.5e-41 173.3 169 60.9
Lalb_Chr13g0300221 Lupinus albus HOM05D007223 ORTHO05D008932 2.5e-41 172.6 166 60.2
vmacro13125 Vaccinium macrocarpon HOM05D007223 ORTHO05D008932 4.2e-41 171.8 118 75.4
SalBow6G4081 Salvia bowleyana HOM05D007223 ORTHO05D008932 7.2e-41 171.0 154 60.4
PGR102G0813 Punica granatum HOM05D007223 ORTHO05D008932 4.7e-40 168.3 201 55.2
Sed0023808 Sechium edule HOM05D007223 ORTHO05D008932 3.0e-39 165.6 122 67.2
CsaV3_2G008380 Cucumis sativus L. HOM05D007223 ORTHO05D008932 8.8e-39 164.1 115 70.4
Psat4g012360 Pisum sativum HOM05D007223 ORTHO05D008932 1.5e-38 163.3 110 75.5
CANSAT11G1503 Cannabis sativa HOM05D007223 ORTHO05D008932 9.8e-38 160.6 114 69.3
COL.COLO4_37700 Corchorus olitorius HOM05D007223 ORTHO05D008932 9.8e-38 160.6 172 57.0
Oeu004200.1 Olea europaea HOM05D007223 ORTHO05D008932 1.7e-37 159.8 143 62.9
MSTRG.19707 Avicennia marina HOM05D007223 ORTHO05D008932 2.8e-37 159.1 135 65.9
Hma1.2p1_1025F.1_g249310 Hydrangea macrophylla HOM05D007223 ORTHO05D008932 3.7e-37 158.7 103 79.6
HanXRQChr10g0308641 Helianthus annuus HOM05D007223 ORTHO05D008932 6.3e-37 157.9 124 62.1
MBI16_g39833_MAGBIO Magnolia biondii HOM05D007223 ORTHO05D008932 2.4e-36 156.0 138 62.3
DCAR_014699 Daucus carota HOM05D007223 ORTHO05D008932 7.0e-36 154.5 110 73.6
PSO782G5105 Papaver somniferum HOM05D007223 ORTHO05D008932 9.2e-36 154.1 126 61.9
Ca_21226_v3 Cicer arietinum L. HOM05D007223 ORTHO05D008932 2.0e-35 152.9 138 60.1
Lsat_1_v5_gn_5_85421 Lactuca sativa HOM05D007223 ORTHO05D008932 2.0e-35 152.9 113 63.7
VMungo1215G0104 Vigna mungo HOM05D007223 ORTHO05D008932 1.0e-34 150.6 145 60.0
SGA_v2.0_scaffold69G23253 Striga asiatica HOM05D007223 ORTHO05D008932 1.3e-34 150.2 136 59.6
Solyc07g019450.3 Solanum lycopersicum HOM05D007223 ORTHO05D008932 1.1e-33 147.1 105 69.5
Os04g0653300 Oryza sativa ssp. japonica HOM05D007223 ORTHO05D008932 2.5e-33 146.0 123 61.0
BraA10t43566Z Brassica rapa HOM05D007223 ORTHO05D008932 4.3e-33 145.2 131 63.4
AUR62033216 Chenopodium quinoa HOM05D007223 ORTHO05D008932 4.3e-33 145.2 116 65.5
C09p49290 Brassica napus HOM05D007223 ORTHO05D008932 7.3e-33 144.4 124 64.5
BolC9t57780H Brassica oleracea HOM05D007223 ORTHO05D008932 7.3e-33 144.4 124 64.5
A10p14870 Brassica napus HOM05D007223 ORTHO05D008932 1.2e-32 143.7 128 64.1
ATR0580G272 Amborella trichopoda HOM05D007223 ORTHO05D008932 4.7e-32 141.7 124 62.1
ECA234G1236 Erigeron canadensis HOM05D007223 ORTHO05D008932 8.0e-32 141.0 107 63.6
MBI14_g17369_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 5.2e-31 138.3 138 58.0
BcaC03g14153 Brassica carinata HOM05D007223 ORTHO05D008932 8.9e-31 137.5 111 66.7
Aa31LG3G13310 Aethionema arabicum HOM05D007223 ORTHO05D008932 1.5e-30 136.7 142 54.9
Migut.J01482 Erythranthe guttata HOM05D007223 ORTHO05D008932 1.5e-30 136.7 180 51.1
MELO3C004026.2 Cucumis melo HOM05D007223 ORTHO05D008932 1.3e-29 133.7 92 69.6
Lj5C590T0 Lonicera japonica HOM05D007223 ORTHO05D008932 1.4e-28 130.2 141 56.7
Lj5C7T1 Lonicera japonica HOM05D007223 ORTHO05D008932 7.0e-28 127.9 141 56.0
SEGI_39293 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 9.2e-28 127.5 104 63.5
ClCG11G012160 Citrullus lanatus HOM05D007223 ORTHO05D008932 1.2e-27 127.1 85 72.9
HPP92_017414 Vanilla planifolia HOM05D007223 ORTHO05D008932 2.7e-27 125.9 151 46.4
PGSC0003DMG400043142 Solanum tuberosum HOM05D007223 ORTHO05D008932 5.6e-25 118.2 81 71.6
EL10Ac8g18282 Beta vulgaris HOM05D007223 ORTHO05D008932 7.3e-25 117.9 92 65.2
Nitab4.5_0001972g0010 Nicotiana tabacum HOM05D007223 ORTHO05D008932 1.4e-20 103.6 109 53.2
SEGI_19995 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 1.6e-19 100.1 115 48.7
Aqoxy7G03081 Aquilegia oxysepala HOM05D007223 ORTHO05D008932 5.0e-18 95.1 70 68.6
Zm00001eb432400 Zea mays HOM05D007223 ORTHO05D008932 6.6e-18 94.7 102 47.1
Glyma.20G083900 Glycine max HOM05D007223 ORTHO05D008932 1.4e-15 87.0 128 46.1
Mapoly0013s0010 Marchantia polymorpha HOM05D007223 ORTHO05D008932 3.1e-15 85.9 91 47.3
AagrBONN_evm.TU.Sc2ySwM_117.1187 Anthoceros agrestis HOM05D007223 ORTHO05D008932 1.7e-13 80.1 99 46.5
CBR_g19697 Chara braunii HOM05D000117 ORTHO05D008932 5.4e-12 75.1 112 35.7
CBR_g39692 Chara braunii HOM05D000117 ORTHO05D000070 7.8e-11 71.2 103 37.9
SMO170G0055 Selaginella moellendorffii HOM05D058183 ORTHO05D008932 3.3e-09 65.9 71 50.7
SMO141G0094 Selaginella moellendorffii HOM05D058183 ORTHO05D008932 4.3e-09 65.5 71 50.7
Aa31LG2G21740 Aethionema arabicum HOM05D000117 ORTHO05D000070 4.7e-08 62.0 89 34.8
arahy.Tifrunner.gnm1.ann1.AIW4ZZ Arachis hypogaea HOM05D000117 ORTHO05D000070 4.0e-07 58.9 91 36.3
arahy.Tifrunner.gnm1.ann1.F8XE83 Arachis hypogaea HOM05D000117 ORTHO05D000070 4.0e-07 58.9 91 36.3
BraA03t14895Z Brassica rapa HOM05D000117 ORTHO05D000070 5.2e-07 58.5 98 31.6
THA.LOC104814530 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 5.2e-07 58.5 102 31.4
A01p09300 Brassica napus HOM05D000117 ORTHO05D000070 6.8e-07 58.2 108 32.4
BraA01t00874Z Brassica rapa HOM05D000117 ORTHO05D000070 6.8e-07 58.2 108 32.4
A03p58340 Brassica napus HOM05D006027 ORTHO05D007604 8.9e-07 57.8 95 31.6
BcaC06g32609 Brassica carinata HOM05D006027 ORTHO05D007604 1.2e-06 57.4 98 31.6
CAN.G438.48 Capsicum annuum HOM05D000117 ORTHO05D000070 2.0e-06 56.6 120 30.8
PSO210G2904 Papaver somniferum HOM05D000117 ORTHO05D000070 2.0e-06 56.6 162 30.2
Rhsim04G0171300 Rhododendron simsii HOM05D000117 ORTHO05D000070 2.0e-06 56.6 149 26.8
SMO137G0202 Selaginella moellendorffii HOM05D000117 ORTHO05D000070 2.0e-06 56.6 93 35.5
THA.LOC104804036 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 2.0e-06 56.6 97 30.9
arahy.Tifrunner.gnm1.ann1.QH3XYS Arachis hypogaea HOM05D000117 ORTHO05D000070 2.6e-06 56.2 98 33.7
arahy.Tifrunner.gnm1.ann1.WISN8Q Arachis hypogaea HOM05D000117 ORTHO05D000070 2.6e-06 56.2 98 33.7
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 2.6e-06 56.2 101 31.7
unitig_22.g5294 Utricularia gibba HOM05D000117 ORTHO05D000070 2.6e-06 56.2 101 29.7
AT2G33310 Arabidopsis thaliana HOM05D000117 ORTHO05D000070 3.4e-06 55.8 92 31.5
C01p10880 Brassica napus HOM05D000117 ORTHO05D000070 3.4e-06 55.8 104 31.7
C07p56360 Brassica napus HOM05D006027 ORTHO05D007604 3.4e-06 55.8 95 32.6
BolC1t01052H Brassica oleracea HOM05D000117 ORTHO05D000070 3.4e-06 55.8 104 31.7
BolC7t46115H Brassica oleracea HOM05D006027 ORTHO05D007604 3.4e-06 55.8 95 32.6
Nitab4.5_0006344g0020 Nicotiana tabacum HOM05D000117 ORTHO05D000070 3.4e-06 55.8 112 30.4
GSVIVG01000721001 Vitis vinifera HOM05D000117 ORTHO05D000070 3.4e-06 55.8 123 30.1
BcaC02g11416 Brassica carinata HOM05D000117 ORTHO05D000070 4.4e-06 55.5 92 31.5
BcaNung04292 Brassica carinata HOM05D000117 ORTHO05D000070 4.4e-06 55.5 105 31.4
BcaNung04694 Brassica carinata HOM05D000117 ORTHO05D000070 4.4e-06 55.5 105 31.4
C04p15810 Brassica napus HOM05D000117 ORTHO05D000070 4.4e-06 55.5 92 31.5
Gohir.D09G228200 Gossypium hirsutum HOM05D000117 ORTHO05D000070 4.4e-06 55.5 107 30.8
MELO3C012839.2 Cucumis melo HOM05D000117 ORTHO05D000070 5.8e-06 55.1 97 30.9
PSO832G4334 Papaver somniferum HOM05D000117 ORTHO05D000070 5.8e-06 55.1 160 30.0
PGR031G0139 Punica granatum HOM05D000117 ORTHO05D000070 5.8e-06 55.1 110 29.1
HPP92_017516 Vanilla planifolia HOM05D000117 ORTHO05D000070 5.8e-06 55.1 114 30.7
AT4G28640 Arabidopsis thaliana HOM05D000117 ORTHO05D000070 7.6e-06 54.7 108 30.6
CARHR003440 Cardamine hirsuta HOM05D000117 ORTHO05D000070 7.6e-06 54.7 105 32.4
Glyma.02G007300 Glycine max HOM05D000117 ORTHO05D000070 7.6e-06 54.7 93 32.3
Glyma.10G138500 Glycine max HOM05D000117 ORTHO05D000070 7.6e-06 54.7 93 32.3
PSO764G0179 Papaver somniferum HOM05D000117 ORTHO05D000070 7.6e-06 54.7 93 31.2
Peaxi162Scf00207g00839 Petunia axillaris HOM05D000117 ORTHO05D000070 7.6e-06 54.7 112 25.9
Phvul.007G208800 Phaseolus vulgaris HOM05D000117 ORTHO05D000070 7.6e-06 54.7 93 32.3
Atru.chr7.1283 Acer truncatum HOM05D000117 ORTHO05D000070 9.9e-06 54.3 106 30.2
AL1G14220 Arabidopsis lyrata HOM05D000117 ORTHO05D000070 9.9e-06 54.3 91 33.0
Ciclev10005544m.g Citrus clementina HOM05D000117 ORTHO05D000070 9.9e-06 54.3 108 29.6
Dinv41484 Davidia involucrata HOM05D000117 ORTHO05D004016 9.9e-06 54.3 89 36.0
Gohir.A09G227200 Gossypium hirsutum HOM05D000117 ORTHO05D000070 9.9e-06 54.3 90 33.3
Nitab4.5_0002424g0010 Nicotiana tabacum HOM05D000117 ORTHO05D000070 9.9e-06 54.3 89 31.5
Os02g0817600 Oryza sativa ssp. japonica HOM05D000117 ORTHO05D000070 9.9e-06 54.3 101 32.7
Psat0s594g0080 Pisum sativum HOM05D000117 ORTHO05D004016 9.9e-06 54.3 89 30.3
QL05p025464 Quercus lobata HOM05D000117 ORTHO05D000070 9.9e-06 54.3 133 27.1
SGA_v2.0_scaffold4G02027 Striga asiatica HOM05D000117 ORTHO05D000070 9.9e-06 54.3 137 25.5
TPR.G8381 Trifolium pratense HOM05D000117 ORTHO05D000070 9.9e-06 54.3 91 31.9


User provided reference genes

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