Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.1e-52 208.8 105 100.0
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 4.8e-33 144.4 84 89.3
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 8.8e-27 123.6 65 95.4
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.1e-26 123.2 65 93.8
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 1.0e-22 110.2 65 83.1
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 1.2e-20 103.2 65 76.9
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 6.1e-20 100.9 61 80.3
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 8.0e-20 100.5 71 73.2
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 8.0e-20 100.5 61 82.0
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 8.0e-20 100.5 61 80.3
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.0e-19 100.1 61 82.0
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.0e-19 100.1 61 82.0
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.4e-19 99.8 71 73.2
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.8e-19 99.4 61 82.0
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 2.3e-19 99.0 61 80.3
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 3.0e-19 98.6 61 78.7
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 3.0e-19 98.6 61 80.3
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 4.0e-19 98.2 61 78.7
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 4.0e-19 98.2 75 70.7
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 4.0e-19 98.2 71 71.8
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 4.0e-19 98.2 75 68.0
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 5.2e-19 97.8 61 78.7
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 6.8e-19 97.4 61 80.3
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 8.8e-19 97.1 61 77.0
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 8.8e-19 97.1 61 78.7
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 8.8e-19 97.1 61 78.7
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 8.8e-19 97.1 61 78.7
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 8.8e-19 97.1 61 78.7
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 8.8e-19 97.1 61 78.7
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 8.8e-19 97.1 64 76.6
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 8.8e-19 97.1 61 78.7
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 8.8e-19 97.1 71 70.4
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 1.2e-18 96.7 61 78.7
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 1.5e-18 96.3 71 66.2
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 1.5e-18 96.3 71 66.2
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 1.5e-18 96.3 61 77.0
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.5e-18 96.3 61 78.7
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.5e-18 96.3 61 78.7
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.5e-18 96.3 61 78.7
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.0e-18 95.9 61 77.0
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 2.0e-18 95.9 61 77.0
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 2.0e-18 95.9 61 77.0
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 2.6e-18 95.5 61 78.7
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 4.4e-18 94.7 61 73.8
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 4.4e-18 94.7 62 75.8
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 5.7e-18 94.4 61 75.4
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 5.7e-18 94.4 61 73.8
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 5.7e-18 94.4 61 73.8
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 7.5e-18 94.0 62 74.2
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 7.5e-18 94.0 81 59.3
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 7.5e-18 94.0 71 67.6
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 7.5e-18 94.0 71 67.6
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 9.8e-18 93.6 71 69.0
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 9.8e-18 93.6 61 77.0
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 9.8e-18 93.6 62 74.2
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 9.8e-18 93.6 64 73.4
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 9.8e-18 93.6 71 66.2
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 9.8e-18 93.6 79 60.8
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 1.3e-17 93.2 61 77.0
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 1.3e-17 93.2 61 72.1
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 1.3e-17 93.2 61 72.1
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 1.3e-17 93.2 61 73.8
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 1.7e-17 92.8 61 73.8
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 1.7e-17 92.8 60 75.0
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 2.2e-17 92.4 60 75.0
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 2.2e-17 92.4 61 75.4
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 2.2e-17 92.4 61 75.4
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 2.2e-17 92.4 81 58.0
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 2.8e-17 92.0 61 75.4
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 2.8e-17 92.0 64 73.4
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.8e-17 92.0 60 75.0
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 2.8e-17 92.0 61 75.4
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 2.8e-17 92.0 61 72.1
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 2.8e-17 92.0 61 75.4
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 3.7e-17 91.7 71 63.4
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 4.8e-17 91.3 71 64.8
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 4.8e-17 91.3 61 70.5
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 4.8e-17 91.3 61 70.5
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 4.8e-17 91.3 80 58.8
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 6.3e-17 90.9 78 61.5
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 6.3e-17 90.9 60 73.3
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 6.3e-17 90.9 61 73.8
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 6.3e-17 90.9 61 77.0
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 8.3e-17 90.5 59 72.9
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.1e-16 90.1 71 66.2
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 1.1e-16 90.1 81 58.0
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 1.1e-16 90.1 69 68.1
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 1.1e-16 90.1 64 68.8
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 1.1e-16 90.1 60 71.7
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 1.1e-16 90.1 61 67.2
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 1.8e-16 89.4 71 64.8
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 2.4e-16 89.0 69 66.7
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 2.4e-16 89.0 66 69.7
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 3.1e-16 88.6 64 67.2
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.1e-16 88.6 63 71.4
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 3.1e-16 88.6 64 68.8
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 4.1e-16 88.2 63 71.4
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 4.1e-16 88.2 61 68.9
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 5.4e-16 87.8 66 68.2
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 7.0e-16 87.4 66 68.2
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 7.0e-16 87.4 57 68.4
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 7.0e-16 87.4 57 70.2
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 9.1e-16 87.0 61 68.9
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 9.1e-16 87.0 60 70.0
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.6e-15 86.3 83 54.2
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 1.6e-15 86.3 72 62.5
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.0e-15 85.9 63 69.8
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.0e-15 85.9 72 58.3
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 3.5e-15 85.1 61 65.6
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.5e-15 85.1 61 65.6
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.5e-15 85.1 61 65.6
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 7.7e-15 84.0 61 67.2
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 5.0e-14 81.3 67 61.2
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.1e-13 80.1 57 68.4
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 4.2e-13 78.2 80 56.2
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 4.2e-13 78.2 62 62.9
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 7.2e-13 77.4 80 51.2
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 9.5e-13 77.0 95 46.3
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 1.2e-12 76.6 71 53.5
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 2.1e-12 75.9 54 64.8
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 4.7e-12 74.7 80 50.0
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 1.8e-11 72.8 91 41.8
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 8.8e-11 70.5 62 53.2
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 1.5e-10 69.7 58 60.3
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.0e-10 69.3 57 63.2
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 2.2e-09 65.9 51 64.7
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 6.3e-09 64.3 41 70.7
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 1.4e-08 63.2 61 49.2
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 9.2e-08 60.5 47 61.7
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.0e-07 59.3 65 52.3
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 2.7e-07 58.9 39 66.7
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 3.5e-07 58.5 39 64.1
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 1.3e-06 56.6 47 55.3
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 3.8e-06 55.1 69 50.7


User provided reference genes

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