Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013460 Carpinus fangiana HOM05D007474 ORTHO05D009367 1.8e-129 466.1 257 100.0
Haze_22034 Corylus avellana HOM05D007474 ORTHO05D009367 3.6e-122 441.8 257 92.6
Haze_22037 Corylus avellana HOM05D007474 ORTHO05D009367 3.6e-122 441.8 257 92.6
CiPaw.07G198000 Carya illinoinensis HOM05D007474 ORTHO05D009367 1.4e-94 350.1 251 76.9
Manes.02G078300 Manihot esculenta HOM05D007474 ORTHO05D009367 8.6e-84 314.3 249 68.3
Dinv41187 Davidia involucrata HOM05D007474 ORTHO05D009367 8.1e-82 307.8 243 66.7
Ciclev10010167m.g Citrus clementina HOM05D007474 ORTHO05D009367 1.4e-81 307.0 251 67.7
GSVIVG01029310001 Vitis vinifera HOM05D007474 ORTHO05D009367 3.4e-80 302.4 243 66.7
Prupe.1G073900 Prunus persica HOM05D007474 ORTHO05D009367 9.8e-80 300.8 249 67.5
Atru.chr7.945_Atru.chr7.946 Acer truncatum HOM05D007474 ORTHO05D009367 1.7e-79 300.1 250 65.6
RcHm_v2.0_Chr4g0399191 Rosa chinensis HOM05D007474 ORTHO05D009367 1.1e-78 297.4 243 66.7
TAR625G0702 Trochodendron aralioides HOM05D007474 ORTHO05D009367 2.1e-77 293.1 243 65.4
Thecc.09G187600 Theobroma cacao HOM05D007474 ORTHO05D009367 8.6e-76 287.7 249 65.5
QL04p010614 Quercus lobata HOM05D007474 ORTHO05D009367 1.5e-75 287.0 255 65.1
FAN17G0817 Fragaria x ananassa HOM05D007474 ORTHO05D009367 2.8e-74 282.7 242 62.8
Actinidia02497 Actinidia chinensis HOM05D007474 ORTHO05D009367 8.1e-74 281.2 243 62.6
Nn8g40674 Nelumbo nucifera HOM05D007474 ORTHO05D009367 5.2e-73 278.5 249 61.0
Duzib170G0522 Durio zibethinus HOM05D007474 ORTHO05D009367 6.8e-73 278.1 243 65.4
FvH4_4g07070 Fragaria vesca HOM05D007474 ORTHO05D009367 5.8e-72 275.0 243 62.1
FAN22G0500 Fragaria x ananassa HOM05D007474 ORTHO05D009367 9.9e-72 274.2 245 62.0
THA.LOC104813505 Tarenaya hassleriana HOM05D007474 ORTHO05D009367 1.3e-71 273.9 252 59.5
FAN07G0784 Fragaria x ananassa HOM05D007474 ORTHO05D009367 4.9e-71 271.9 250 62.0
TPR.G7578 Trifolium pratense HOM05D007474 ORTHO05D009367 4.9e-71 271.9 243 59.7
Rhsim01G0114800 Rhododendron simsii HOM05D007474 ORTHO05D009367 3.2e-70 269.2 245 60.8
Rhsim01G0114300 Rhododendron simsii HOM05D007474 ORTHO05D009367 7.1e-70 268.1 245 60.4
Phvul.009G235500 Phaseolus vulgaris HOM05D007474 ORTHO05D009367 4.6e-69 265.4 249 59.0
Lj6g0008723 Lotus japonicus HOM05D007474 ORTHO05D009367 7.8e-69 264.6 249 57.4
Psat1g143800 Pisum sativum HOM05D007474 ORTHO05D009367 7.8e-69 264.6 242 59.5
MD16G1247400 Malus domestica HOM05D007474 ORTHO05D009367 1.0e-68 264.2 223 64.6
Lalb_Chr23g0276761 Lupinus albus HOM05D007474 ORTHO05D009367 1.7e-68 263.5 243 59.3
PSO063G0774 Papaver somniferum HOM05D007474 ORTHO05D009367 5.1e-68 261.9 246 60.6
Carub.0007s1493 Capsella rubella HOM05D007474 ORTHO05D009367 6.6e-68 261.5 243 60.1
Gohir.A02G011900 Gossypium hirsutum HOM05D007474 ORTHO05D009367 6.6e-68 261.5 248 62.1
Thhalv10027087m.g Eutrema salsugineum HOM05D007474 ORTHO05D009367 8.6e-68 261.2 243 60.1
Medtr2g038090 Medicago truncatula HOM05D007474 ORTHO05D009367 8.6e-68 261.2 243 58.4
AT4G26020 Arabidopsis thaliana HOM05D007474 ORTHO05D009367 1.9e-67 260.0 243 60.1
FAN12G4033 Fragaria x ananassa HOM05D007474 ORTHO05D009367 1.9e-67 260.0 248 60.1
Cpa.g.sc95.3 Carica papaya HOM05D007474 ORTHO05D009367 7.3e-67 258.1 249 59.0
Sp7g24050 Schrenkiella parvula HOM05D007474 ORTHO05D009367 2.8e-66 256.1 243 59.3
A03p56400 Brassica napus HOM05D007474 ORTHO05D009367 4.7e-66 255.4 243 58.0
AL7G26960 Arabidopsis lyrata HOM05D007474 ORTHO05D009367 6.2e-66 255.0 243 60.1
TWI63G0256 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 6.2e-66 255.0 249 58.2
Lsat_1_v5_gn_7_55841 Lactuca sativa HOM05D007474 ORTHO05D009367 8.1e-66 254.6 245 58.0
Glyma.09G060400 Glycine max HOM05D007474 ORTHO05D009367 2.4e-65 253.1 243 58.4
Aqoxy7G02873 Aquilegia oxysepala HOM05D007474 ORTHO05D009367 3.1e-65 252.7 268 54.9
C07p54630 Brassica napus HOM05D007474 ORTHO05D009367 4.0e-65 252.3 243 57.6
CARHR233540 Cardamine hirsuta HOM05D007474 ORTHO05D009367 4.0e-65 252.3 243 58.8
VMungo1309G2929 Vigna mungo HOM05D007474 ORTHO05D009367 5.2e-65 251.9 249 57.4
HanXRQChr03g0065461 Helianthus annuus HOM05D007474 ORTHO05D009367 2.0e-64 250.0 243 58.0
Cc06_g17460 Coffea canephora HOM05D007474 ORTHO05D009367 1.3e-63 247.3 253 56.1
PSO170G3200 Papaver somniferum HOM05D007474 ORTHO05D009367 2.2e-63 246.5 296 51.0
CANSAT56G2223 Cannabis sativa HOM05D007474 ORTHO05D009367 2.9e-63 246.1 243 56.8
Gohir.D02G012700 Gossypium hirsutum HOM05D007474 ORTHO05D009367 1.4e-62 243.8 243 60.5
Peaxi162Scf00231g01013 Petunia axillaris HOM05D007474 ORTHO05D009367 1.4e-62 243.8 243 55.1
arahy.Tifrunner.gnm1.ann1.0S7KVV Arachis hypogaea HOM05D007474 ORTHO05D009367 7.1e-62 241.5 227 56.8
BolC7t45951H Brassica oleracea HOM05D007474 ORTHO05D009367 9.3e-62 241.1 261 53.6
Hma1.2p1_0235F.1_g098730 Hydrangea macrophylla HOM05D007474 ORTHO05D009367 4.6e-61 238.8 214 58.9
Sabra18G0115300 Salix brachista HOM05D007474 ORTHO05D009367 7.8e-61 238.0 187 66.3
Aa31LG3G380 Aethionema arabicum HOM05D007474 ORTHO05D009367 1.0e-60 237.7 249 55.8
Gorai.005G016200 Gossypium raimondii HOM05D007474 ORTHO05D009367 1.3e-60 237.3 248 58.9
arahy.Tifrunner.gnm1.ann1.FGVY1L Arachis hypogaea HOM05D007474 ORTHO05D009367 3.0e-60 236.1 227 55.9
ECA240G4744 Erigeron canadensis HOM05D007474 ORTHO05D009367 6.6e-60 235.0 243 53.1
Nitab4.5_0011174g0010 Nicotiana tabacum HOM05D007474 ORTHO05D009367 4.3e-59 232.3 243 53.5
PGR142G1289 Punica granatum HOM05D007474 ORTHO05D009367 1.2e-56 224.2 256 52.3
CAN.G107.39 Capsicum annuum HOM05D007474 ORTHO05D009367 4.5e-56 222.2 239 51.5
BcaC06g32774 Brassica carinata HOM05D007474 ORTHO05D009367 2.9e-55 219.5 243 53.1
Sc11g0007970 Simmondsia chinensis HOM05D007474 ORTHO05D009367 1.6e-53 213.8 252 50.0
MBI16_g28190_MAGBIO Magnolia biondii HOM05D007474 ORTHO05D009367 1.0e-52 211.1 202 57.9
PGR142G0563 Punica granatum HOM05D007474 ORTHO05D009367 2.8e-50 203.0 260 51.2
BraA03t14710Z Brassica rapa HOM05D007474 ORTHO05D009367 6.9e-49 198.4 258 46.9
COL.COLO4_06926 Corchorus olitorius HOM05D007474 ORTHO05D009367 1.5e-48 197.2 199 58.8
Zm00001eb232320 Zea mays HOM05D007474 ORTHO05D009367 9.9e-48 194.5 246 45.5
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 1.4e-46 190.7 226 47.3
Nitab4.5_0000056g0090 Nicotiana tabacum HOM05D007474 ORTHO05D009367 9.3e-46 188.0 270 44.4
AUR62012086 Chenopodium quinoa HOM05D007474 ORTHO05D009367 1.0e-44 184.5 243 44.9
Os02g0148600 Oryza sativa ssp. japonica HOM05D007474 ORTHO05D009367 1.0e-44 184.5 246 44.3
Oeu044666.1 Olea europaea HOM05D007474 ORTHO05D009367 1.3e-44 184.1 198 53.0
EL10Ac2g04755 Beta vulgaris HOM05D007474 ORTHO05D009367 1.8e-44 183.7 243 46.5
AUR62039378 Chenopodium quinoa HOM05D007474 ORTHO05D009367 2.5e-43 179.9 243 45.3
AUR62039384 Chenopodium quinoa HOM05D007474 ORTHO05D009367 1.4e-38 164.1 235 43.0
Potri.018G141232 Populus trichocarpa HOM05D007474 ORTHO05D009367 1.4e-38 164.1 126 66.7
Ah.09g225720 Amaranthus hybridus HOM05D007474 ORTHO05D009367 9.3e-38 161.4 249 42.6
Eucgr.C00103 Eucalyptus grandis HOM05D007474 ORTHO05D009367 2.7e-37 159.8 144 59.7
Potri.018G141166 Populus trichocarpa HOM05D007474 ORTHO05D009367 3.5e-37 159.5 143 62.2
CSS0031812 Camellia sinensis var. sinensis HOM05D007474 ORTHO05D009367 1.3e-34 151.0 157 52.9
Hma1.2p1_0140F.1_g063730 Hydrangea macrophylla HOM05D007474 ORTHO05D009367 7.2e-30 135.2 119 60.5
vmacro20808 Vaccinium macrocarpon HOM05D007474 ORTHO05D009367 1.6e-29 134.0 139 53.2
Ca_02115_v3 Cicer arietinum L. HOM05D007474 ORTHO05D009367 3.6e-29 132.9 126 54.0
PGR142G3816 Punica granatum HOM05D007474 ORTHO05D009367 6.3e-26 122.1 119 58.0
Hund13756 Selenicereus undatus HOM05D007474 ORTHO05D009367 7.2e-22 108.6 132 46.2
QL04p011351 Quercus lobata HOM05D000009 ORTHO05D000008 3.6e-21 106.3 101 60.4
Lj4A313T24 Lonicera japonica HOM05D007474 ORTHO05D009367 4.4e-19 99.4 86 68.6
AUR62004543 Chenopodium quinoa HOM05D007474 ORTHO05D009367 5.3e-17 92.4 168 37.5
Actinidia07550 Actinidia chinensis HOM05D007474 ORTHO05D009367 5.9e-16 89.0 77 57.1
TWI63G1298 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 8.5e-15 85.1 105 47.6
SMO364G0168 Selaginella moellendorffii HOM05D007474 ORTHO05D009367 7.2e-14 82.0 243 28.0
Lju170C0T1 Lonicera japonica HOM05D007424 ORTHO05D009367 2.1e-13 80.5 97 51.5
vmacro20809 Vaccinium macrocarpon HOM05D007474 ORTHO05D009367 2.3e-12 77.0 55 69.1
arahy.Tifrunner.gnm1.ann1.TVY351 Arachis hypogaea HOM05D007474 ORTHO05D009367 1.5e-11 74.3 55 65.5
arahy.Tifrunner.gnm1.ann1.245C1J Arachis hypogaea HOM05D007474 ORTHO05D009367 1.3e-10 71.2 65 52.3
Mapoly0011s0196 Marchantia polymorpha HOM05D007474 ORTHO05D009367 2.8e-10 70.1 259 25.9
Actinidia07549 Actinidia chinensis HOM05D007474 ORTHO05D009367 1.6e-08 64.3 47 66.0
Eucgr.C00104 Eucalyptus grandis HOM05D007474 ORTHO05D009367 1.0e-07 61.6 57 56.1
arahy.Tifrunner.gnm1.ann1.J5XFRX Arachis hypogaea HOM05D011742 ORTHO05D014450 3.8e-07 59.7 55 56.4
MBI16_g42994_MAGBIO Magnolia biondii HOM05D007474 ORTHO05D009367 2.5e-06 57.0 134 32.8


User provided reference genes

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