Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013457 Carpinus fangiana HOM05D006498 ORTHO05D006377 1.3e-171 606.7 384 100.0
Haze_22031 Corylus avellana HOM05D006498 ORTHO05D006377 4.5e-153 545.0 384 87.5
CiPaw.07G197600 Carya illinoinensis HOM05D006498 ORTHO05D006377 3.0e-88 329.7 387 61.2
Prupe.1G074500 Prunus persica HOM05D006498 ORTHO05D006377 4.6e-65 252.7 441 50.6
Eucgr.C00107 Eucalyptus grandis HOM05D006498 ORTHO05D006377 1.4e-61 241.1 315 60.6
Atru.chr7.955 Acer truncatum HOM05D006498 ORTHO05D006377 5.3e-61 239.2 403 51.4
Manes.14G159400 Manihot esculenta HOM05D006498 ORTHO05D006377 5.3e-61 239.2 415 51.8
Ca_21256_v3 Cicer arietinum L. HOM05D006498 ORTHO05D006377 1.2e-60 238.0 416 51.9
TWI34G1139 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 1.2e-60 238.0 409 47.4
CSS0012471 Camellia sinensis var. sinensis HOM05D006498 ORTHO05D006377 1.5e-60 237.7 367 50.1
FAN17G1293 Fragaria x ananassa HOM05D006498 ORTHO05D006377 2.0e-60 237.3 395 52.4
TWI32G0168 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 5.8e-60 235.7 397 47.4
VMungo1215G1417 Vigna mungo HOM05D006498 ORTHO05D006377 6.4e-59 232.3 404 48.3
Dinv28799 Davidia involucrata HOM05D006498 ORTHO05D006377 8.4e-59 231.9 267 55.8
GSVIVG01029313001 Vitis vinifera HOM05D006498 ORTHO05D006377 3.2e-58 229.9 405 53.1
Duzib150G1211 Durio zibethinus HOM05D006498 ORTHO05D006377 4.2e-58 229.6 440 45.7
FAN12G3360 Fragaria x ananassa HOM05D006498 ORTHO05D006377 4.6e-57 226.1 409 51.6
Actinidia23350 Actinidia chinensis HOM05D006498 ORTHO05D006377 6.0e-57 225.7 452 41.4
FvH4_4g07150 Fragaria vesca HOM05D006498 ORTHO05D006377 1.8e-56 224.2 397 51.1
arahy.Tifrunner.gnm1.ann1.YNM2K2 Arachis hypogaea HOM05D006498 ORTHO05D006377 1.1e-55 221.5 319 51.4
PGR142G3062 Punica granatum HOM05D006498 ORTHO05D006377 1.1e-55 221.5 420 46.2
PGR142G3622 Punica granatum HOM05D006498 ORTHO05D006377 1.1e-55 221.5 420 46.2
MD13G1239600 Malus domestica HOM05D006498 ORTHO05D006377 1.6e-54 217.6 400 49.5
Lj4g0022386 Lotus japonicus HOM05D006498 ORTHO05D006377 2.8e-54 216.9 408 46.3
Gohir.D13G212600 Gossypium hirsutum HOM05D006498 ORTHO05D006377 3.6e-54 216.5 431 45.7
Gorai.013G243000 Gossypium raimondii HOM05D006498 ORTHO05D006377 3.6e-54 216.5 431 45.7
Hma1.2p1_0491F.1_g164630 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 3.6e-54 216.5 421 44.4
Sc18g0007220 Simmondsia chinensis HOM05D006498 ORTHO05D006377 4.8e-54 216.1 302 51.0
arahy.Tifrunner.gnm1.ann1.XIUU7W Arachis hypogaea HOM05D006498 ORTHO05D006377 6.2e-54 215.7 426 46.0
MELO3C017425.2 Cucumis melo HOM05D006498 ORTHO05D006377 6.2e-54 215.7 426 43.2
Ciclev10008415m.g Citrus clementina HOM05D006498 ORTHO05D006377 1.8e-53 214.2 304 58.6
Gohir.A13G208200 Gossypium hirsutum HOM05D006498 ORTHO05D006377 3.1e-53 213.4 318 54.1
Cc01_g15950 Coffea canephora HOM05D006498 ORTHO05D006377 4.0e-53 213.0 434 46.1
Lsat_1_v5_gn_9_16541 Lactuca sativa HOM05D006498 ORTHO05D006377 9.0e-53 211.8 451 40.8
Phvul.003G140900 Phaseolus vulgaris HOM05D006498 ORTHO05D006377 1.2e-52 211.5 395 46.8
CANSAT11G0487 Cannabis sativa HOM05D006498 ORTHO05D006377 2.0e-52 210.7 393 46.3
Sed0023189 Sechium edule HOM05D006498 ORTHO05D006377 5.8e-52 209.1 409 44.7
Oeu003665.1 Olea europaea HOM05D006498 ORTHO05D006377 7.6e-52 208.8 464 48.1
ClCG06G013640 Citrullus lanatus HOM05D006498 ORTHO05D006377 9.9e-52 208.4 500 40.6
CAN.G844.1 Capsicum annuum HOM05D006498 ORTHO05D006377 1.7e-51 207.6 426 42.5
Medtr4g127350 Medicago truncatula HOM05D006498 ORTHO05D006377 2.9e-51 206.8 408 49.8
RcHm_v2.0_Chr4g0399301 Rosa chinensis HOM05D006498 ORTHO05D006377 2.9e-51 206.8 312 53.5
HanXRQChr07g0190541 Helianthus annuus HOM05D006498 ORTHO05D006377 4.9e-51 206.1 396 47.7
Potri.006G075000 Populus trichocarpa HOM05D006498 ORTHO05D006377 1.1e-50 204.9 419 47.3
unitig_60.g25575 Utricularia gibba HOM05D006498 ORTHO05D006377 1.1e-50 204.9 440 39.3
FAN22G0654 Fragaria x ananassa HOM05D006498 ORTHO05D006377 1.4e-50 204.5 446 46.2
CsaV3_1G031910 Cucumis sativus L. HOM05D006498 ORTHO05D006377 1.9e-50 204.1 384 47.9
Psat0s3389g0200 Pisum sativum HOM05D006498 ORTHO05D006377 2.4e-50 203.8 297 55.9
Sabra06G0055700 Salix brachista HOM05D006498 ORTHO05D006377 7.1e-50 202.2 503 41.2
Glyma.13G101000 Glycine max HOM05D006498 ORTHO05D006377 9.3e-50 201.8 397 47.6
Thecc.09G186800 Theobroma cacao HOM05D006498 ORTHO05D006377 2.1e-49 200.7 328 49.4
Migut.N00676 Erythranthe guttata HOM05D006498 ORTHO05D006377 3.5e-49 199.9 409 46.2
Glyma.17G058700 Glycine max HOM05D006498 ORTHO05D006377 1.0e-48 198.4 402 50.5
Nn4g25125 Nelumbo nucifera HOM05D006498 ORTHO05D006377 2.3e-48 197.2 488 39.8
Sopen09g019810 Solanum pennellii HOM05D006498 ORTHO05D006377 1.1e-47 194.9 307 46.9
Peaxi162Scf00235g00219 Petunia axillaris HOM05D006498 ORTHO05D006377 1.9e-47 194.1 390 42.6
THA.LOC104820009 Tarenaya hassleriana HOM05D006498 ORTHO05D006377 1.9e-47 194.1 408 43.1
Aqoxy7G02850 Aquilegia oxysepala HOM05D006498 ORTHO05D006377 2.5e-47 193.7 364 45.1
Nitab4.5_0000038g0230 Nicotiana tabacum HOM05D006498 ORTHO05D006377 3.3e-47 193.4 383 42.0
SGA_v2.0_scaffold95G28702 Striga asiatica HOM05D006498 ORTHO05D006377 3.3e-47 193.4 458 42.4
SalBow3G4321 Salvia bowleyana HOM05D006498 ORTHO05D006377 5.6e-47 192.6 347 44.4
Nitab4.5_0005686g0030 Nicotiana tabacum HOM05D006498 ORTHO05D006377 1.6e-46 191.0 378 43.7
MSTRG.17962 Avicennia marina HOM05D006498 ORTHO05D006377 2.8e-46 190.3 486 41.8
AT2G19270 Arabidopsis thaliana HOM05D006498 ORTHO05D006377 2.4e-45 187.2 411 42.8
Lj2A1114T36 Lonicera japonica HOM05D006498 ORTHO05D006377 4.0e-45 186.4 437 44.2
Hma1.2p1_0491F.1_g164640 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 7.6e-44 182.2 110 78.2
Aa31LG8G16310 Aethionema arabicum HOM05D006498 ORTHO05D006377 3.8e-43 179.9 396 42.7
AL3G49020 Arabidopsis lyrata HOM05D006498 ORTHO05D006377 2.5e-42 177.2 398 43.5
EL10Ac8g19141 Beta vulgaris HOM05D006498 ORTHO05D006377 3.2e-42 176.8 420 41.9
CDE05G1404 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 4.2e-42 176.4 388 41.5
AUR62025173 Chenopodium quinoa HOM05D006498 ORTHO05D006377 1.2e-41 174.9 257 48.2
DCAR_004773 Daucus carota HOM05D006498 ORTHO05D006377 2.7e-41 173.7 314 50.0
ECA247G1929 Erigeron canadensis HOM05D000109 ORTHO05D006377 2.7e-41 173.7 425 43.5
Rhsim13G0054400 Rhododendron simsii HOM05D006498 ORTHO05D006377 1.3e-40 171.4 358 39.9
Lalb_Chr12g0199631 Lupinus albus HOM05D006498 ORTHO05D006377 1.8e-40 171.0 110 74.5
MBI16_g05840_MAGBIO Magnolia biondii HOM05D006498 ORTHO05D006377 1.8e-40 171.0 407 45.2
Thhalv10022749m.g Eutrema salsugineum HOM05D006498 ORTHO05D006377 6.7e-40 169.1 396 40.4
PSO063G6554 Papaver somniferum HOM05D006498 ORTHO05D006377 9.6e-39 165.2 266 45.1
C07p03100 Brassica napus HOM05D006498 ORTHO05D006377 2.1e-38 164.1 398 43.0
BolC7t40702H Brassica oleracea HOM05D006498 ORTHO05D006377 3.7e-38 163.3 398 42.0
Lsat_1_v5_gn_3_41001 Lactuca sativa HOM05D006498 ORTHO05D006377 3.7e-38 163.3 99 80.8
BcaC06g36544 Brassica carinata HOM05D006498 ORTHO05D006377 1.1e-37 161.8 398 44.0
Os02g0175900 Oryza sativa ssp. japonica HOM05D006498 ORTHO05D006377 3.1e-37 160.2 99 77.8
Lsat_1_v5_gn_7_52821 Lactuca sativa HOM05D006498 ORTHO05D006377 5.3e-37 159.5 99 78.8
PSO170G2385 Papaver somniferum HOM05D006498 ORTHO05D006377 5.3e-37 159.5 386 42.7
Lsat_1_v5_gn_4_158461 Lactuca sativa HOM05D006498 ORTHO05D006377 1.5e-36 157.9 107 74.8
vmacro02834 Vaccinium macrocarpon HOM05D006498 ORTHO05D006377 1.5e-36 157.9 381 34.9
Carub.0003s3350 Capsella rubella HOM05D006498 ORTHO05D006377 3.4e-36 156.8 401 39.9
Sp3g32630 Schrenkiella parvula HOM05D006498 ORTHO05D006377 3.4e-36 156.8 409 40.3
BraA07t27953Z Brassica rapa HOM05D006498 ORTHO05D006377 5.9e-36 156.0 397 41.6
Zm00001eb206900 Zea mays HOM05D006498 ORTHO05D006377 5.9e-36 156.0 99 75.8
CARHR109730 Cardamine hirsuta HOM05D006498 ORTHO05D006377 7.6e-36 155.6 391 40.4
A07p01520 Brassica napus HOM05D006498 ORTHO05D006377 1.3e-35 154.8 403 40.2
BcaB03g16716 Brassica carinata HOM05D006498 ORTHO05D006377 1.7e-35 154.5 253 44.7
HPP92_011644 Vanilla planifolia HOM05D006498 ORTHO05D006377 1.7e-35 154.5 445 35.1
Lsat_1_v5_gn_5_22180 Lactuca sativa HOM05D006498 ORTHO05D006377 5.0e-35 152.9 97 77.3
Zm00001eb233520 Zea mays HOM05D006498 ORTHO05D006377 5.0e-35 152.9 97 75.3
Lsat_1_v5_gn_9_15580 Lactuca sativa HOM05D006498 ORTHO05D006377 1.9e-34 151.0 95 76.8
ATR0626G368 Amborella trichopoda HOM05D006498 ORTHO05D006377 2.7e-33 147.1 368 37.5
CDE05G1079 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 6.9e-29 132.5 76 86.8
AagrBONN_evm.TU.Sc2ySwM_228.1455 Anthoceros agrestis HOM05D006498 ORTHO05D006377 2.6e-28 130.6 95 71.6
Mapoly0001s0081 Marchantia polymorpha HOM05D006498 ORTHO05D006377 2.6e-28 130.6 95 67.4
SMO361G0453 Selaginella moellendorffii HOM05D006498 ORTHO05D006377 1.3e-27 128.3 106 60.4
Actinidia30000 Actinidia chinensis HOM05D006498 ORTHO05D006377 3.8e-27 126.7 398 35.4
Cpa.g.sc2680.1 Carica papaya HOM05D006498 ORTHO05D006377 9.4e-26 122.1 340 39.7
Pp3c15_6280 Physcomitrium patens HOM05D006498 ORTHO05D006377 1.8e-24 117.9 97 64.9
Solyc09g055870.2 Solanum lycopersicum HOM05D006498 ORTHO05D006377 1.8e-24 117.9 345 37.4
Lalb_Chr13g0299941 Lupinus albus HOM05D006498 ORTHO05D006377 3.9e-24 116.7 276 35.1
CBR_g12030 Chara braunii HOM05D006498 ORTHO05D006377 5.1e-24 116.3 84 69.0
COL.COLO4_06397 Corchorus olitorius HOM05D006498 ORTHO05D006377 9.7e-23 112.1 64 79.7
QL02p046691 Quercus lobata HOM05D006498 ORTHO05D000004 6.9e-21 105.9 250 42.4
QL02p046697 Quercus lobata HOM05D006498 ORTHO05D006377 2.9e-19 100.5 54 85.2
Lsat_1_v5_gn_4_108221 Lactuca sativa HOM05D006498 ORTHO05D006377 5.0e-19 99.8 62 79.0
Ah.09g231280 Amaranthus hybridus HOM05D006498 ORTHO05D006377 2.7e-17 94.0 365 36.7
SHI03076 Sapria himalayana HOM05D006498 ORTHO05D006377 2.7e-17 94.0 54 81.5
Lalb_Chr13g0299961 Lupinus albus HOM05D006498 ORTHO05D006377 4.7e-17 93.2 54 83.3
Solyc09g055850.3 Solanum lycopersicum HOM05D006498 ORTHO05D006377 8.8e-16 89.0 52 82.7
SGA_v2.0_scaffold95G28701 Striga asiatica HOM05D006498 ORTHO05D006377 3.7e-14 83.6 60 63.3
Sed0023288 Sechium edule HOM05D006498 ORTHO05D006377 1.1e-13 82.0 385 30.9
Cre06.g278258 Chlamydomonas reinhardtii HOM05D006498 ORTHO05D006377 6.7e-08 62.8 100 40.0
PRCOL_00004634 Prasinoderma coloniale HOM05D006498 ORTHO05D006377 3.3e-07 60.5 84 36.9


User provided reference genes

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