Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 0.0e+00 1301.2 1026 100.0
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 0.0e+00 1233.0 1027 96.1
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 4.7e-258 895.2 1026 80.8
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 2.3e-257 892.9 984 80.4
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 6.2e-218 761.9 1027 72.2
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 1.3e-212 744.2 1022 72.9
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.8e-212 743.8 1022 72.9
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 7.7e-200 701.8 1025 71.7
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 2.1e-197 693.7 1020 71.1
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 5.1e-196 689.1 1022 68.6
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 3.3e-195 686.4 1016 68.2
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.2e-189 667.9 915 75.8
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 1.6e-189 667.5 1019 70.7
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 1.5e-187 661.0 1023 67.9
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 1.4e-185 654.4 990 71.4
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 7.2e-182 642.1 1020 68.4
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 9.4e-182 641.7 1020 67.3
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 1.6e-181 641.0 1019 66.2
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 1.6e-181 641.0 1020 67.6
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 2.0e-179 634.0 1021 68.3
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 4.8e-178 629.4 944 69.9
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 3.1e-177 626.7 913 73.8
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 3.1e-177 626.7 1020 67.2
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 4.2e-174 616.3 1024 65.4
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 5.5e-174 615.9 1023 65.3
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 2.6e-171 607.1 1024 64.8
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 1.3e-170 604.7 1027 64.8
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 1.7e-170 604.4 1023 63.3
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 4.8e-170 602.8 1009 55.8
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 8.3e-170 602.1 926 71.9
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 5.3e-169 599.4 1020 63.2
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 3.8e-167 593.2 1014 67.9
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 1.9e-166 590.9 1013 60.4
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 9.4e-166 588.6 1013 60.2
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 1.4e-164 584.7 1020 60.4
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 5.7e-163 579.3 1016 63.0
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 7.5e-163 578.9 1022 56.9
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 6.3e-162 575.9 1020 65.0
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 5.4e-161 572.8 1022 62.6
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 4.7e-157 559.7 1020 63.9
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 1.1e-153 548.5 1025 63.2
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 5.4e-153 546.2 1020 63.9
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 1.4e-148 531.6 1022 62.6
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 3.9e-143 513.5 1023 63.5
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 6.6e-143 512.7 1022 53.6
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 2.5e-142 510.8 1017 62.4
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 4.0e-140 503.4 1020 61.6
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 1.7e-135 488.0 932 60.8
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 1.3e-130 471.9 701 59.8
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 1.4e-129 468.4 833 65.3
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 4.1e-129 466.8 648 62.8
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 2.7e-128 464.2 979 62.2
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 7.3e-126 456.1 1015 59.1
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 9.6e-126 455.7 979 60.5
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 4.7e-125 453.4 1017 59.8
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 4.4e-123 446.8 906 60.8
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 6.4e-122 443.0 682 63.5
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 2.4e-121 441.0 1019 60.7
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 7.1e-121 439.5 1027 57.3
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 1.2e-120 438.7 678 67.8
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 1.7e-119 434.9 1008 46.9
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 1.1e-118 432.2 1023 61.4
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 8.1e-117 426.0 978 59.1
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 1.1e-116 425.6 1018 58.5
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 1.4e-116 425.2 1019 59.1
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 2.4e-116 424.5 1019 59.7
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 3.1e-116 424.1 704 57.1
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 3.1e-116 424.1 1019 59.3
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 5.8e-115 419.9 1020 59.4
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 9.9e-115 419.1 1005 58.1
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 1.4e-113 415.2 925 61.1
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 1.2e-112 412.1 1047 59.2
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 1.2e-107 395.6 983 56.2
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 9.9e-107 392.5 1022 58.6
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 9.6e-102 375.9 1022 55.9
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 4.9e-98 363.6 1025 55.6
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 4.9e-98 363.6 1025 55.6
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 8.4e-98 362.8 1024 53.8
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 2.1e-93 348.2 1024 58.2
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 1.5e-91 342.0 1028 57.4
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 7.6e-91 339.7 1028 57.7
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 9.3e-89 332.8 919 60.4
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 7.4e-86 323.2 686 49.4
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 1.4e-81 308.9 671 54.1
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 9.4e-81 306.2 361 50.4
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 3.8e-74 284.3 925 56.9
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 2.6e-59 235.0 388 55.2
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 5.5e-57 227.3 343 37.6
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 2.1e-56 225.3 692 46.5
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 8.8e-55 219.9 580 51.4
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 1.4e-47 196.1 173 56.1
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 8.8e-47 193.4 483 65.2
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 5.4e-44 184.1 192 54.7
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 5.7e-38 164.1 241 42.3
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 9.8e-38 163.3 663 46.3
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 1.9e-33 149.1 451 60.8
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 2.5e-33 148.7 450 61.3
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 1.9e-28 132.5 161 46.0
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.9e-28 132.5 208 38.5
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 7.0e-28 130.6 450 60.0
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 6.0e-27 127.5 149 49.0
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 8.6e-26 123.6 412 63.8
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.6e-24 119.4 410 63.9
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 2.1e-24 119.0 538 52.2
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 6.2e-16 90.9 153 38.6
Medtr3g103990 Medicago truncatula HOM05D006842 ORTHO05D008908 8.9e-15 87.0 95 47.4
AUR62039733 Chenopodium quinoa HOM05D006842 ORTHO05D008908 7.1e-12 77.4 90 43.3
Nitab4.5_0003261g0020 Nicotiana tabacum HOM05D006842 ORTHO05D008908 2.8e-08 65.5 42 64.3
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 3.6e-08 65.1 115 32.2
Aa31LG8G940 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.4e-07 63.2 137 29.9
FAN07G1010 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.4e-07 63.2 109 41.3
AL3G25810 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 1.8e-07 62.8 137 30.7
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 1.8e-07 62.8 103 30.1
MD16G1250500 Malus domestica HOM05D006842 ORTHO05D008908 3.1e-07 62.0 54 53.7
Carub.0003s1328 Capsella rubella HOM05D000001 ORTHO05D000003 6.8e-07 60.8 137 29.2
unitig_22.g6629 Utricularia gibba HOM05D000001 ORTHO05D009704 6.8e-07 60.8 215 24.2
BcaC04g22583 Brassica carinata HOM05D000162 ORTHO05D024264 8.9e-07 60.5 100 37.0
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 8.9e-07 60.5 126 27.0
Thhalv10020299m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 1.5e-06 59.7 137 29.9
Thhalv10024633m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 1.5e-06 59.7 131 30.5
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 2.0e-06 59.3 190 25.8
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 2.0e-06 59.3 96 34.4
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 2.0e-06 59.3 170 23.5
AT3G13770 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 2.6e-06 58.9 137 29.9
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 2.6e-06 58.9 105 31.4
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 3.4e-06 58.5 134 29.9
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 3.4e-06 58.5 134 29.9
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 3.4e-06 58.5 119 31.1
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 3.4e-06 58.5 115 29.6
Psat1g146880 Pisum sativum HOM05D003056 ORTHO05D003422 3.4e-06 58.5 96 35.4
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 3.4e-06 58.5 107 27.1
HPP92_000923 Vanilla planifolia HOM05D000001 ORTHO05D000003 3.4e-06 58.5 152 28.9
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 4.4e-06 58.2 134 29.1
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 4.4e-06 58.2 140 30.0
Sc13g0007300 Simmondsia chinensis HOM05D006842 ORTHO05D008908 4.4e-06 58.2 91 35.2
Aqoxy1G01656 Aquilegia oxysepala HOM05D018609 ORTHO05D019561 5.8e-06 57.8 100 34.0
arahy.Tifrunner.gnm1.ann1.33SUC1 Arachis hypogaea HOM05D000001 ORTHO05D009704 5.8e-06 57.8 176 26.1
CiPaw.01G067400 Carya illinoinensis HOM05D003900 ORTHO05D005009 5.8e-06 57.8 123 27.6
Ca_02033_v3 Cicer arietinum L. HOM05D003056 ORTHO05D003422 5.8e-06 57.8 96 35.4
MELO3C019751.2 Cucumis melo HOM05D000001 ORTHO05D009704 5.8e-06 57.8 178 27.5
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 5.8e-06 57.8 104 26.0
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 5.8e-06 57.8 104 26.0
Zm00001eb378980 Zea mays HOM05D006877 ORTHO05D008735 5.8e-06 57.8 112 29.5
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 7.6e-06 57.4 193 25.9
AagrBONN_evm.TU.Sc2ySwM_228.5701 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.9e-06 57.0 105 30.5
AagrBONN_evm.TU.Sc2ySwM_362.2053 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.9e-06 57.0 104 29.8


User provided reference genes

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