Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.6e-252 875.5 425 100.0
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 1.7e-201 706.1 480 74.8
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 5.8e-194 681.0 428 76.4
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 4.4e-186 654.8 419 73.5
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 1.3e-182 643.3 403 75.7
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 6.6e-182 641.0 358 80.2
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 6.6e-182 641.0 349 82.8
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 6.6e-182 641.0 440 71.1
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 1.5e-181 639.8 407 73.2
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 2.5e-181 639.0 343 83.7
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 2.5e-181 639.0 343 83.7
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 2.5e-181 639.0 420 71.9
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 9.6e-181 637.1 422 71.1
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 9.6e-181 637.1 422 71.1
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 1.6e-180 636.3 390 74.9
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 1.6e-180 636.3 421 71.5
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 2.1e-180 636.0 353 81.0
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 6.2e-180 634.4 394 73.9
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 3.1e-179 632.1 418 71.1
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.0e-179 631.7 422 70.4
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 5.3e-179 631.3 358 79.3
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 9.0e-179 630.6 378 75.1
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 5.8e-178 627.9 349 80.5
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.9e-178 627.1 411 71.8
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 1.3e-177 626.7 343 81.9
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 6.4e-177 624.4 418 71.8
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 8.4e-177 624.0 390 74.1
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 1.1e-176 623.6 416 70.4
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 1.9e-176 622.9 343 81.3
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 5.4e-176 621.3 421 69.4
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.2e-175 620.2 422 69.0
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 1.2e-175 620.2 343 79.6
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 2.7e-175 619.0 404 73.0
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.6e-175 618.2 418 69.6
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 7.9e-175 617.5 402 71.1
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 7.9e-175 617.5 428 70.1
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 1.0e-174 617.1 413 70.2
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 1.3e-174 616.7 344 79.1
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 1.8e-174 616.3 398 71.6
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 3.0e-174 615.5 355 77.2
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 1.1e-173 613.6 343 79.3
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 4.3e-173 611.7 354 77.4
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 5.6e-173 611.3 358 77.1
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 7.4e-173 610.9 354 77.1
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 7.4e-173 610.9 358 76.3
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 2.8e-172 609.0 353 75.9
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 6.2e-172 607.8 355 76.9
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 1.8e-171 606.3 378 73.5
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 5.3e-171 604.7 343 77.8
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 5.3e-171 604.7 394 71.8
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 9.0e-171 604.0 420 68.3
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 1.2e-170 603.6 359 75.8
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 1.5e-170 603.2 354 75.4
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 2.6e-170 602.4 351 77.5
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 3.4e-170 602.1 353 76.5
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 3.4e-170 602.1 409 68.2
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 5.8e-170 601.3 354 75.7
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 7.6e-170 600.9 427 66.3
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 7.6e-170 600.9 344 77.6
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 1.7e-169 599.7 343 76.7
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 3.8e-169 598.6 351 76.6
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 8.4e-169 597.4 344 76.7
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 1.1e-168 597.0 345 76.8
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 2.4e-168 595.9 358 74.9
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 5.5e-168 594.7 398 69.3
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 5.5e-168 594.7 398 69.3
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 7.1e-168 594.3 353 75.6
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 1.6e-167 593.2 360 73.3
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 1.6e-167 593.2 344 76.5
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 1.6e-167 593.2 344 76.5
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 2.7e-167 592.4 343 76.7
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 6.0e-167 591.3 392 68.9
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 6.0e-167 591.3 344 76.2
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 7.9e-167 590.9 399 68.7
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 7.9e-167 590.9 399 68.7
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 1.8e-166 589.7 392 69.1
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 2.3e-166 589.3 344 75.6
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 3.0e-166 589.0 412 66.7
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 6.7e-166 587.8 411 66.4
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 8.7e-166 587.4 413 66.1
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.3e-165 585.5 387 72.1
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 3.7e-164 582.0 534 61.6
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 1.1e-163 580.5 355 74.1
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 3.1e-163 578.9 353 74.2
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 4.0e-163 578.6 371 70.6
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 9.0e-163 577.4 362 72.9
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.5e-162 576.6 423 66.2
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 3.4e-162 575.5 396 67.7
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 4.5e-162 575.1 343 74.9
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 4.5e-162 575.1 343 74.3
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 9.3e-160 567.4 347 74.1
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.6e-159 565.1 359 69.4
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 1.3e-158 563.5 408 65.4
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 2.3e-158 562.8 358 70.9
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.8e-156 555.1 359 67.7
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 4.8e-156 555.1 356 69.4
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.9e-153 545.8 427 67.7
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 3.0e-150 535.8 444 59.5
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 4.3e-149 531.9 323 73.4
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 5.7e-149 531.6 381 65.6
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 2.2e-148 529.6 359 70.5
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 5.0e-145 518.5 296 79.4
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 3.9e-142 508.8 344 69.8
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 2.6e-141 506.1 308 74.0
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 2.6e-141 506.1 308 74.0
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.4e-139 499.6 589 52.1
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 1.5e-138 496.9 368 64.9
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 2.3e-134 483.0 308 72.7
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 4.8e-132 475.3 351 61.0
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 1.4e-131 473.8 361 59.8
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.0e-129 467.6 346 59.8
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 5.7e-125 451.8 353 62.9
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 2.0e-122 443.4 341 58.1
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.2e-121 439.9 249 78.7
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 6.5e-121 438.3 326 66.0
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 1.2e-117 427.6 344 58.7
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 9.1e-115 417.9 314 58.9
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 5.7e-109 398.7 253 70.8
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 5.9e-106 388.7 354 57.1
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 2.6e-93 346.7 186 81.7
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 3.6e-79 299.7 372 41.4
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 3.6e-71 273.1 162 74.7
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 3.9e-65 253.1 136 82.4
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 6.4e-60 235.7 344 39.8
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 8.7e-57 225.3 194 58.2
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 5.6e-56 222.6 354 40.1
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 2.0e-53 214.2 129 73.6
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 4.5e-53 213.0 111 81.1
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.1e-43 181.8 102 83.3
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.0e-36 158.7 106 66.0
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 1.3e-31 141.7 186 44.1
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.2e-23 114.4 66 77.3
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 3.6e-18 97.1 66 62.1
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.1e-16 92.0 61 65.6
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 5.2e-09 66.6 41 65.9
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.0e-08 64.7 46 69.6
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.2e-07 61.2 102 38.2
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 5.3e-06 56.6 39 69.2


User provided reference genes

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