Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013397 Carpinus fangiana HOM05D002570 ORTHO05D002689 7.1e-101 370.5 181 100.0
Ciclev10010203m.g Citrus clementina HOM05D002570 ORTHO05D002689 7.5e-18 94.7 109 46.8
Dinv25488 Davidia involucrata HOM05D002570 ORTHO05D002689 6.4e-17 91.7 105 48.6
arahy.Tifrunner.gnm1.ann1.G00P8D Arachis hypogaea HOM05D002570 ORTHO05D002689 2.7e-15 86.3 66 63.6
TPR.G27566 Trifolium pratense HOM05D002570 ORTHO05D002689 7.8e-15 84.7 109 45.9
FvH4_4g06680 Fragaria vesca HOM05D030384 ORTHO05D002689 3.9e-14 82.4 92 50.0
FAN12G3444 Fragaria x ananassa HOM05D030384 ORTHO05D002689 3.9e-14 82.4 92 50.0
Duzib251G0386 Durio zibethinus HOM05D002570 ORTHO05D002689 5.1e-14 82.0 99 42.4
Potri.018G131900 Populus trichocarpa HOM05D002570 ORTHO05D002689 5.1e-14 82.0 106 42.5
Rhsim08G0200900 Rhododendron simsii HOM05D002570 ORTHO05D002689 1.5e-13 80.5 107 41.1
FAN22G1225 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.9e-13 80.1 68 60.3
VMungo1215G3302 Vigna mungo HOM05D002570 ORTHO05D002689 2.5e-13 79.7 109 45.0
Actinidia08926 Actinidia chinensis HOM05D002570 ORTHO05D002689 3.3e-13 79.3 107 42.1
Cc04_g05480 Coffea canephora HOM05D002570 ORTHO05D002689 4.3e-13 79.0 106 41.5
Lj4g0013925 Lotus japonicus HOM05D002570 ORTHO05D002689 4.3e-13 79.0 108 41.7
Potri.006G070200 Populus trichocarpa HOM05D002570 ORTHO05D002689 4.3e-13 79.0 102 39.2
Psat4g014680 Pisum sativum HOM05D002570 ORTHO05D002689 7.3e-13 78.2 105 41.9
vmacro19088 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 9.6e-13 77.8 106 39.6
Thecc.06G132900 Theobroma cacao HOM05D002570 ORTHO05D002689 1.2e-12 77.4 106 40.6
TWI60G0727 Tripterygium wilfordii HOM05D002570 ORTHO05D002689 1.2e-12 77.4 106 38.7
Prupe.1G069600 Prunus persica HOM05D002570 ORTHO05D002689 1.6e-12 77.0 82 48.8
Sabra06G0052300 Salix brachista HOM05D002570 ORTHO05D002689 1.6e-12 77.0 100 39.0
Dinv13685 Davidia involucrata HOM05D002570 ORTHO05D002689 2.1e-12 76.6 106 41.5
Dinv21443 Davidia involucrata HOM05D002570 ORTHO05D002689 2.1e-12 76.6 106 41.5
arahy.Tifrunner.gnm1.ann1.ANT7GU Arachis hypogaea HOM05D002570 ORTHO05D002689 8.1e-12 74.7 66 56.1
COL.COLO4_30895 Corchorus olitorius HOM05D002570 ORTHO05D002689 8.1e-12 74.7 106 39.6
Hma1.2p1_1208F.1_g267175 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 8.1e-12 74.7 106 38.7
Phvul.003G137400 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 8.1e-12 74.7 77 53.2
Sopen03g036750 Solanum pennellii HOM05D002570 ORTHO05D002689 8.1e-12 74.7 105 39.0
PGSC0003DMG400014220 Solanum tuberosum HOM05D002570 ORTHO05D002689 8.1e-12 74.7 105 39.0
Glyma.17G055600 Glycine max HOM05D002570 ORTHO05D002689 1.1e-11 74.3 111 42.3
Medtr4g126400 Medicago truncatula HOM05D002570 ORTHO05D002689 1.1e-11 74.3 116 40.5
Solyc03g117840.4 Solanum lycopersicum HOM05D002570 ORTHO05D002689 1.1e-11 74.3 105 39.0
TAR383G0799 Trochodendron aralioides HOM05D002570 ORTHO05D002689 1.1e-11 74.3 108 40.7
Gohir.A12G155900 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.4e-11 73.9 103 37.9
Gohir.D12G159000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.4e-11 73.9 98 39.8
Peaxi162Scf00314g00938 Petunia axillaris HOM05D002570 ORTHO05D002689 1.4e-11 73.9 104 39.4
MBI14_g19442_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 1.8e-11 73.6 105 41.0
Manes.11G071400 Manihot esculenta HOM05D002570 ORTHO05D002689 2.4e-11 73.2 106 34.9
PGR102G1262 Punica granatum HOM05D002570 ORTHO05D002689 2.4e-11 73.2 106 39.6
Glyma.13G103400 Glycine max HOM05D002570 ORTHO05D002689 3.1e-11 72.8 133 37.6
Lsat_1_v5_gn_1_30640 Lactuca sativa HOM05D002570 ORTHO05D002689 4.0e-11 72.4 106 35.8
Haze_15246 Corylus avellana HOM05D002570 ORTHO05D002689 5.2e-11 72.0 108 40.7
Nn8g40408 Nelumbo nucifera HOM05D002570 ORTHO05D002689 5.2e-11 72.0 106 39.6
CSS0011601 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 6.8e-11 71.6 105 37.1
CSS0038527 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 6.8e-11 71.6 105 37.1
Sabra03G0137200 Salix brachista HOM05D002570 ORTHO05D002689 6.8e-11 71.6 105 39.0
Ciclev10026849m.g Citrus clementina HOM05D002570 ORTHO05D002689 8.9e-11 71.2 96 38.5
CsaV3_7G031670 Cucumis sativus L. HOM05D002570 ORTHO05D002689 8.9e-11 71.2 106 40.6
ClCG09G003530 Citrullus lanatus HOM05D002570 ORTHO05D002689 1.2e-10 70.9 106 39.6
Gohir.A05G143000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.2e-10 70.9 106 37.7
Gohir.D05G145400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.2e-10 70.9 106 37.7
Gorai.009G149300 Gossypium raimondii HOM05D002570 ORTHO05D002689 1.2e-10 70.9 106 37.7
QL05p081283 Quercus lobata HOM05D002570 ORTHO05D002689 1.2e-10 70.9 106 42.5
Sed0009460 Sechium edule HOM05D002570 ORTHO05D002689 1.2e-10 70.9 106 40.6
Lalb_Chr12g0199761 Lupinus albus HOM05D002570 ORTHO05D002689 1.5e-10 70.5 91 45.1
Nitab4.5_0004194g0090 Nicotiana tabacum HOM05D002570 ORTHO05D002689 1.5e-10 70.5 104 38.5
Nitab4.5_0007293g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 1.5e-10 70.5 104 38.5
MELO3C023490.2 Cucumis melo HOM05D002570 ORTHO05D002689 2.0e-10 70.1 106 39.6
Gorai.008G172100 Gossypium raimondii HOM05D002570 ORTHO05D002689 2.6e-10 69.7 98 37.8
HanXRQChr02g0033781 Helianthus annuus HOM05D002570 ORTHO05D002689 3.4e-10 69.3 106 36.8
FvH4_6g28000 Fragaria vesca HOM05D002570 ORTHO05D002689 4.4e-10 68.9 96 42.7
FAN02G4288 Fragaria x ananassa HOM05D002570 ORTHO05D002689 4.4e-10 68.9 96 42.7
FAN14G4539 Fragaria x ananassa HOM05D002570 ORTHO05D002689 4.4e-10 68.9 96 42.7
MBI16_g27293_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 4.4e-10 68.9 146 36.3
GSVIVG01016063001 Vitis vinifera HOM05D002570 ORTHO05D002689 5.8e-10 68.6 106 37.7
CiPaw.01G051100 Carya illinoinensis HOM05D002570 ORTHO05D002689 7.6e-10 68.2 96 39.6
Sed0010699 Sechium edule HOM05D002570 ORTHO05D002689 7.6e-10 68.2 106 37.7
CAN.G1008.23 Capsicum annuum HOM05D002570 ORTHO05D002689 9.9e-10 67.8 105 36.2
MD09G1230400 Malus domestica HOM05D002570 ORTHO05D002689 9.9e-10 67.8 97 42.3
RcHm_v2.0_Chr2g0131671 Rosa chinensis HOM05D002570 ORTHO05D002689 9.9e-10 67.8 96 40.6
Duzib192G0671 Durio zibethinus HOM05D002570 ORTHO05D002689 1.3e-09 67.4 106 37.7
Glyma.13G371800 Glycine max HOM05D002570 ORTHO05D002689 1.3e-09 67.4 96 36.5
FAN09G2432 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.7e-09 67.0 96 41.7
Gohir.D10G050000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.7e-09 67.0 106 36.8
Gorai.011G053600 Gossypium raimondii HOM05D002570 ORTHO05D002689 1.7e-09 67.0 106 36.8
MD17G1229300 Malus domestica HOM05D002570 ORTHO05D002689 1.7e-09 67.0 75 52.0
Manes.04G097900 Manihot esculenta HOM05D002570 ORTHO05D002689 1.7e-09 67.0 106 34.0
Potri.003G187500 Populus trichocarpa HOM05D002570 ORTHO05D002689 1.7e-09 67.0 103 38.8
Actinidia25496 Actinidia chinensis HOM05D002570 ORTHO05D002689 2.2e-09 66.6 110 39.1
MSTRG.22832 Avicennia marina HOM05D002570 ORTHO05D002689 2.2e-09 66.6 74 44.6
FAN05G0139 Fragaria x ananassa HOM05D002570 ORTHO05D002689 2.2e-09 66.6 96 41.7
FAN05G5383 Fragaria x ananassa HOM05D002570 ORTHO05D002689 2.2e-09 66.6 96 41.7
Potri.001G037400 Populus trichocarpa HOM05D002570 ORTHO05D002689 2.2e-09 66.6 106 36.8
Prupe.3G106900 Prunus persica HOM05D002570 ORTHO05D002689 2.2e-09 66.6 70 52.9
MSTRG.11212 Avicennia marina HOM05D002570 ORTHO05D002689 4.9e-09 65.5 74 43.2
Phvul.005G184200 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 4.9e-09 65.5 96 36.5
Actinidia18273 Actinidia chinensis HOM05D002570 ORTHO05D002689 6.4e-09 65.1 106 35.8
ClCG10G012800 Citrullus lanatus HOM05D002570 ORTHO05D002689 6.4e-09 65.1 106 34.9
Dinv23257 Davidia involucrata HOM05D002570 ORTHO05D002689 6.4e-09 65.1 106 34.9
SalBow1G2645 Salvia bowleyana HOM05D002570 ORTHO05D002689 8.4e-09 64.7 105 36.2
Migut.D01154 Erythranthe guttata HOM05D002570 ORTHO05D002689 1.1e-08 64.3 77 42.9
Eucgr.J03139 Eucalyptus grandis HOM05D002570 ORTHO05D002689 1.1e-08 64.3 106 34.0
Glyma.15G001900 Glycine max HOM05D002570 ORTHO05D002689 1.1e-08 64.3 96 39.6
Gohir.A10G049400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.1e-08 64.3 106 38.7
HanXRQChr04g0099961 Helianthus annuus HOM05D002570 ORTHO05D002689 1.4e-08 63.9 106 34.9
CsaV3_3G032640 Cucumis sativus L. HOM05D002570 ORTHO05D002689 2.4e-08 63.2 106 34.0
Migut.I00642 Erythranthe guttata HOM05D002570 ORTHO05D002689 2.4e-08 63.2 78 39.7
Atru.chr1.2751 Acer truncatum HOM05D002570 ORTHO05D002689 4.2e-08 62.4 106 34.9
Oeu033446.1 Olea europaea HOM05D002570 ORTHO05D002689 4.2e-08 62.4 69 44.9
Lj3g0002113 Lotus japonicus HOM05D002570 ORTHO05D002689 7.1e-08 61.6 83 39.8
Nn1g04609 Nelumbo nucifera HOM05D002570 ORTHO05D002689 7.1e-08 61.6 105 31.4
TAR376G0812 Trochodendron aralioides HOM05D002570 ORTHO05D002689 7.1e-08 61.6 127 31.5
ECA247G0437 Erigeron canadensis HOM05D005398 ORTHO05D000476 9.3e-08 61.2 80 40.0
Oeu036442.1 Olea europaea HOM05D002570 ORTHO05D002689 9.3e-08 61.2 59 47.5
Thecc.02G311400 Theobroma cacao HOM05D002570 ORTHO05D002689 1.6e-07 60.5 63 52.4
Oeu012866.1 Olea europaea HOM05D002570 ORTHO05D002689 2.1e-07 60.1 108 31.5
Phvul.004G022100 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 3.5e-07 59.3 98 31.6
PGSC0003DMG400028926 Solanum tuberosum HOM05D002570 ORTHO05D002689 3.5e-07 59.3 64 43.8
CAN.G1089.3 Capsicum annuum HOM05D002570 ORTHO05D002689 4.6e-07 58.9 64 43.8
Psat5g308160 Pisum sativum HOM05D002570 ORTHO05D002689 4.6e-07 58.9 94 39.4
GSVIVG01009363001 Vitis vinifera HOM05D002570 ORTHO05D002689 4.6e-07 58.9 107 32.7
Solyc06g068620.3 Solanum lycopersicum HOM05D002570 ORTHO05D002689 6.0e-07 58.5 64 43.8
Sopen06g025880 Solanum pennellii HOM05D002570 ORTHO05D002689 6.0e-07 58.5 64 43.8
CANSAT64G2315 Cannabis sativa HOM05D002570 ORTHO05D002689 7.8e-07 58.2 107 32.7
DCAR_016323 Daucus carota HOM05D002570 ORTHO05D002689 7.8e-07 58.2 106 34.9
CSS0011900 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 1.0e-06 57.8 90 36.7
FAN17G2389 Fragaria x ananassa HOM05D030384 ORTHO05D002689 1.0e-06 57.8 71 46.5
Hma1.2p1_0235F.1_g098980 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 1.0e-06 57.8 82 40.2
QL12p037631 Quercus lobata HOM05D002570 ORTHO05D002689 1.0e-06 57.8 107 33.6
SEGI_16988 Sequoiadendron giganteum HOM05D002570 ORTHO05D002689 1.0e-06 57.8 99 34.3
Lj3g0010275 Lotus japonicus HOM05D002570 ORTHO05D002689 1.3e-06 57.4 96 31.2
SGA_v2.0_scaffold74G24622 Striga asiatica HOM05D002570 ORTHO05D002689 1.3e-06 57.4 85 41.2
TAR628G0321 Trochodendron aralioides HOM05D002570 ORTHO05D002689 1.3e-06 57.4 97 36.1
PSO170G3310 Papaver somniferum HOM05D002570 ORTHO05D002689 1.7e-06 57.0 81 40.7
TAR381G0312 Trochodendron aralioides HOM05D002570 ORTHO05D002689 1.7e-06 57.0 100 32.0
unitig_22.g6281 Utricularia gibba HOM05D002570 ORTHO05D002689 2.3e-06 56.6 69 40.6
Zm00001eb274770 Zea mays HOM05D002570 ORTHO05D002689 3.0e-06 56.2 100 40.0
Manes.18G044800 Manihot esculenta HOM05D002570 ORTHO05D002689 3.9e-06 55.8 124 33.1
PSO017G5699 Papaver somniferum HOM05D002570 ORTHO05D002689 3.9e-06 55.8 82 39.0
SEGI_30481 Sequoiadendron giganteum HOM05D002570 ORTHO05D002689 3.9e-06 55.8 98 31.6
Zm00001eb071700 Zea mays HOM05D002570 ORTHO05D002689 5.1e-06 55.5 59 49.2
Hma1.2p1_0819F.1_g223830 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 6.6e-06 55.1 107 30.8
Peaxi162Scf00207g00335 Petunia axillaris HOM05D002570 ORTHO05D002689 6.6e-06 55.1 71 38.0
Zm00001eb067680 Zea mays HOM05D002570 ORTHO05D002689 6.6e-06 55.1 86 37.2
Os04g0658200 Oryza sativa ssp. japonica HOM05D002570 ORTHO05D002689 8.7e-06 54.7 81 35.8
unitig_27.g24959 Utricularia gibba HOM05D002570 ORTHO05D002689 8.7e-06 54.7 100 36.0


User provided reference genes

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