Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 0.0e+00 1100.1 551 100.0
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 7.6e-247 857.1 549 79.6
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 1.1e-242 843.2 551 78.2
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 3.0e-219 765.4 550 72.2
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 3.1e-216 755.4 550 71.3
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.0e-214 750.4 547 70.4
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 2.3e-211 739.2 548 70.3
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 2.0e-210 736.1 551 70.6
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 3.5e-207 725.3 564 66.7
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 8.5e-206 720.7 556 68.9
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 2.5e-205 719.2 551 68.2
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 2.1e-204 716.1 551 68.1
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 1.0e-203 713.8 550 68.4
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 2.2e-201 706.1 550 66.9
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 4.1e-200 701.8 550 66.4
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 1.7e-198 696.4 546 66.1
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 1.7e-198 696.4 552 68.5
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.9e-198 695.7 550 66.2
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 2.9e-198 695.7 551 65.5
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 3.3e-197 692.2 556 66.2
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 4.3e-197 691.8 551 66.4
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 5.6e-197 691.4 555 66.8
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 3.0e-195 685.6 551 65.3
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 2.6e-194 682.6 549 65.6
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 1.7e-193 679.9 547 65.3
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 4.9e-193 678.3 563 64.1
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 3.5e-191 672.2 551 64.6
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.0e-190 670.6 569 63.4
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 3.3e-189 665.6 551 63.3
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 9.5e-189 664.1 554 64.1
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 5.2e-187 658.3 546 62.5
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 6.8e-187 657.9 451 77.6
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 2.0e-186 656.4 548 63.3
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 9.8e-186 654.1 549 63.0
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 1.3e-185 653.7 546 62.3
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 4.9e-185 651.7 545 63.5
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 6.4e-185 651.4 546 62.1
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 6.4e-185 651.4 546 61.9
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 1.9e-184 649.8 559 61.9
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 1.6e-183 646.7 558 64.0
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 2.7e-183 646.0 550 62.0
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 3.5e-183 645.6 557 62.5
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 7.8e-183 644.4 557 61.0
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 1.7e-182 643.3 552 61.6
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 2.3e-182 642.9 555 61.3
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 3.9e-182 642.1 552 61.4
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 3.3e-181 639.0 546 62.5
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 4.3e-181 638.6 549 61.7
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 1.2e-180 637.1 556 61.2
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 3.6e-180 635.6 558 61.5
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 3.6e-180 635.6 557 60.3
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 3.6e-180 635.6 560 61.8
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 4.7e-180 635.2 559 60.6
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 6.2e-180 634.8 556 61.0
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 2.3e-179 632.9 550 61.6
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 3.1e-179 632.5 555 61.3
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 4.0e-179 632.1 557 60.1
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 1.2e-178 630.6 558 60.0
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 1.2e-178 630.6 550 62.0
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 3.4e-178 629.0 549 62.5
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 4.4e-178 628.6 560 59.1
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 5.8e-178 628.2 324 95.7
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 1.7e-177 626.7 556 61.9
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 3.7e-177 625.5 555 61.3
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 2.4e-176 622.9 547 60.9
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 3.2e-176 622.5 620 55.8
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 7.1e-176 621.3 563 59.1
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 3.5e-175 619.0 551 59.7
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 4.6e-175 618.6 559 59.6
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.7e-174 616.7 551 62.1
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 2.3e-174 616.3 528 60.8
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 3.0e-174 615.9 553 59.3
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 5.1e-174 615.1 556 59.4
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 1.5e-173 613.6 555 60.0
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 2.5e-173 612.8 552 60.9
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 3.1e-171 605.9 569 56.9
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 6.8e-171 604.7 556 58.3
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 1.5e-170 603.6 553 60.2
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 3.4e-170 602.4 564 58.2
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.7e-169 600.1 570 57.0
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 2.4e-168 596.3 482 67.2
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 1.6e-167 593.6 554 60.1
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.1e-167 593.2 612 54.1
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 3.5e-167 592.4 549 57.9
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 7.8e-167 591.3 557 57.8
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 1.3e-166 590.5 558 57.7
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 2.4e-163 579.7 502 62.0
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 3.1e-163 579.3 559 57.4
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 7.6e-162 574.7 504 58.3
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.9e-161 572.8 578 55.0
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 4.9e-161 572.0 551 58.6
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 1.6e-159 567.0 548 55.3
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 3.9e-158 562.4 509 59.7
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 5.6e-157 558.5 502 58.2
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 2.1e-156 556.6 526 57.6
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 2.8e-156 556.2 560 55.5
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 3.1e-155 552.7 549 54.8
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 6.9e-155 551.6 559 55.5
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 9.0e-155 551.2 515 59.0
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 2.6e-154 549.7 581 54.2
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 5.8e-154 548.5 558 54.7
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 5.4e-152 542.0 551 55.2
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 6.0e-151 538.5 610 49.3
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 1.3e-150 537.3 500 57.0
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 1.8e-150 537.0 559 53.0
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 1.9e-149 533.5 470 59.1
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 7.4e-149 531.6 580 51.7
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 4.2e-144 515.8 527 54.1
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.6e-143 513.8 483 56.9
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 1.6e-143 513.8 471 56.3
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 1.3e-142 510.8 549 49.9
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 4.8e-140 502.3 557 50.4
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 1.4e-139 500.7 560 49.3
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 5.8e-138 495.4 546 51.1
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 1.4e-136 490.7 496 53.0
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.3e-124 451.1 455 54.1
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 3.1e-123 446.4 567 46.7
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.0e-122 443.7 548 48.2
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 3.8e-121 439.5 544 45.2
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 6.5e-121 438.7 470 55.1
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 4.8e-116 422.5 503 49.1
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.9e-115 418.7 569 42.2
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.9e-115 418.7 569 42.2
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 2.2e-113 413.7 334 63.8
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.2e-113 413.7 569 42.7
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.1e-107 393.3 534 42.7
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.0e-107 392.1 601 40.1
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 3.5e-106 389.8 506 45.3
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 2.7e-98 363.6 556 41.0
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 7.2e-96 355.5 463 46.4
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 3.1e-91 340.1 360 50.6
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 4.4e-85 319.7 703 33.9
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.7e-76 290.0 646 33.3
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.7e-74 283.9 630 32.7
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.3e-73 281.6 181 71.8
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 3.9e-73 280.0 396 45.5
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 1.1e-72 278.5 156 92.9
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 4.0e-70 270.0 168 73.8
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 3.4e-69 266.9 459 38.6
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 6.2e-63 246.1 257 54.5
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 9.5e-56 222.2 188 64.9
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 6.2e-47 193.0 191 47.1
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 2.3e-41 174.5 139 66.9
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 5.1e-41 173.3 284 43.7
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.5e-40 171.8 167 58.7
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 3.6e-39 167.2 155 59.4
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.8e-38 164.9 152 61.2
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 1.1e-35 155.6 99 68.7
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.9e-32 144.8 141 53.9
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 1.0e-25 122.5 180 36.1
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 3.9e-25 120.6 166 38.6
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 9.6e-24 115.9 94 59.6
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 1.6e-18 98.6 102 48.0
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 2.7e-18 97.8 68 64.7
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 3.9e-17 94.0 167 41.3
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 1.1e-08 65.9 39 66.7


User provided reference genes

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