Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 2.8e-143 511.9 258 100.0
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 7.5e-128 460.7 258 91.1
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 1.4e-118 429.9 258 82.9
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 1.7e-108 396.4 258 74.4
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 1.2e-104 383.6 258 74.8
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 8.3e-103 377.5 257 71.6
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 1.1e-102 377.1 230 82.2
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 3.9e-100 368.6 241 73.0
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 3.9e-100 368.6 257 72.0
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 8.6e-100 367.5 258 72.1
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 8.6e-100 367.5 257 70.4
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 1.2e-98 363.6 257 70.8
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 2.0e-96 356.3 251 69.3
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 2.0e-96 356.3 250 71.2
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 2.0e-96 356.3 258 68.6
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 2.6e-96 355.9 255 71.4
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 9.8e-96 354.0 249 71.5
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 4.9e-95 351.7 257 66.9
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 6.4e-95 351.3 249 70.3
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 1.1e-94 350.5 259 70.3
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 2.1e-93 346.3 251 70.5
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 7.8e-93 344.4 257 67.7
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 1.3e-92 343.6 257 65.8
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 1.7e-92 343.2 251 68.5
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 5.1e-92 341.7 250 70.8
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 2.5e-91 339.3 250 70.4
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 3.3e-91 339.0 253 68.8
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 4.3e-91 338.6 257 65.4
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 5.6e-91 338.2 292 60.3
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 7.3e-91 337.8 258 65.5
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 9.5e-91 337.4 248 68.1
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 3.6e-90 335.5 253 67.6
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 3.6e-90 335.5 251 68.9
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 8.1e-90 334.3 236 71.2
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 1.4e-89 333.6 253 68.0
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 4.0e-89 332.0 254 65.7
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 4.0e-89 332.0 251 67.7
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 4.0e-89 332.0 236 69.1
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 7.6e-88 327.8 251 66.1
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 2.9e-87 325.9 251 66.9
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 4.9e-87 325.1 243 66.7
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 1.9e-86 323.2 253 64.8
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 1.6e-85 320.1 252 63.9
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 2.1e-85 319.7 257 63.8
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 3.5e-85 318.9 251 63.7
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 1.3e-84 317.0 250 66.4
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 1.7e-84 316.6 237 67.1
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 1.1e-83 313.9 257 63.0
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 3.3e-83 312.4 257 61.5
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 5.6e-83 311.6 252 61.5
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 5.6e-83 311.6 232 68.5
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 7.3e-83 311.2 236 67.4
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 7.3e-83 311.2 236 67.4
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 1.1e-81 307.4 239 66.5
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 1.1e-81 307.4 251 61.0
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.1e-81 307.4 257 61.1
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 1.8e-81 306.6 258 60.9
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.4e-81 306.2 257 61.1
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 3.4e-80 302.4 248 62.9
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 3.4e-80 302.4 251 64.1
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 4.4e-80 302.0 251 59.4
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 4.4e-80 302.0 210 69.5
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 2.2e-79 299.7 230 66.1
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 2.2e-79 299.7 241 62.2
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 1.1e-78 297.4 257 57.6
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 4.2e-78 295.4 257 55.6
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 9.3e-78 294.3 247 62.3
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 1.2e-77 293.9 257 56.4
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 1.6e-77 293.5 257 56.8
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 1.6e-77 293.5 236 63.1
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 1.6e-77 293.5 236 63.1
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 3.5e-77 292.4 250 56.0
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 4.6e-77 292.0 253 56.5
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 4.6e-77 292.0 253 56.9
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 4.6e-77 292.0 253 56.5
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 4.6e-77 292.0 253 56.5
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 4.6e-77 292.0 253 56.9
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 6.0e-77 291.6 257 54.1
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 7.8e-77 291.2 255 56.5
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 1.3e-76 290.4 257 56.4
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 1.1e-75 287.3 253 57.7
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 1.6e-74 283.5 234 61.1
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 8.1e-74 281.2 249 57.0
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 4.0e-73 278.9 257 54.5
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 4.0e-73 278.9 257 54.5
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 3.4e-72 275.8 282 49.6
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 5.4e-70 268.5 257 53.7
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 3.5e-69 265.8 236 55.5
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 7.3e-67 258.1 254 57.5
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 2.6e-64 249.6 252 52.4
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 5.8e-64 248.4 254 53.1
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 9.9e-64 247.7 257 51.0
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 1.7e-63 246.9 249 54.6
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 1.1e-62 244.2 218 58.7
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 7.1e-62 241.5 189 61.4
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 6.0e-61 238.4 224 57.6
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 7.9e-61 238.0 336 45.5
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 8.7e-60 234.6 171 67.8
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 5.8e-56 221.9 245 51.8
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 8.7e-52 208.0 170 61.2
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 1.4e-46 190.7 149 61.1
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 8.7e-44 181.4 137 69.3
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 5.1e-36 155.6 136 57.4
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 6.7e-36 155.2 110 70.0
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 2.8e-34 149.8 245 40.4
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 4.1e-33 146.0 116 61.2
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 4.1e-33 146.0 116 61.2
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 1.1e-25 121.3 206 37.9
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 1.2e-24 117.9 123 52.8
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 1.6e-24 117.5 129 53.5
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 4.5e-24 115.9 154 42.2
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 7.7e-24 115.2 223 32.7
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 3.0e-20 103.2 81 72.8
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 3.7e-18 96.3 86 57.0
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 3.1e-17 93.2 104 48.1
Haze_26101 Corylus avellana HOM05D006609 ORTHO05D008551 1.5e-11 74.3 127 35.4
Cre10.g426400 Chlamydomonas reinhardtii HOM05D006609 ORTHO05D008551 2.2e-10 70.5 255 24.7
arahy.Tifrunner.gnm1.ann1.WH0W9H Arachis hypogaea HOM05D006609 ORTHO05D008551 1.1e-06 58.2 38 71.1


User provided reference genes

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