Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 7.7e-26 119.8 64 100.0
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 3.5e-18 94.4 51 98.0
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 1.6e-15 85.5 51 88.2
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 4.7e-15 84.0 51 86.3
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 6.2e-15 83.6 51 86.3
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 6.2e-15 83.6 51 88.2
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 1.8e-14 82.0 51 84.3
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 3.1e-14 81.3 53 77.4
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 5.2e-14 80.5 51 82.4
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 5.2e-14 80.5 63 69.8
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 6.8e-14 80.1 51 82.4
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 6.8e-14 80.1 63 65.1
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 6.8e-14 80.1 63 65.1
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.2e-13 79.3 51 86.3
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 1.2e-13 79.3 51 80.4
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 1.2e-13 79.3 51 80.4
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 1.5e-13 79.0 51 80.4
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 1.5e-13 79.0 51 80.4
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 1.5e-13 79.0 51 80.4
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 1.5e-13 79.0 51 80.4
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.5e-13 79.0 51 82.4
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.5e-13 79.0 51 82.4
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 1.5e-13 79.0 51 80.4
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 1.5e-13 79.0 51 80.4
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 1.5e-13 79.0 51 82.4
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 2.0e-13 78.6 51 80.4
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 2.6e-13 78.2 51 80.4
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 3.4e-13 77.8 51 80.4
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 3.4e-13 77.8 51 78.4
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 3.4e-13 77.8 50 84.0
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 3.4e-13 77.8 51 78.4
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 4.4e-13 77.4 51 78.4
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 4.4e-13 77.4 51 76.5
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 4.4e-13 77.4 51 76.5
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 4.4e-13 77.4 51 76.5
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 4.4e-13 77.4 51 76.5
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 4.4e-13 77.4 51 76.5
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 4.4e-13 77.4 51 78.4
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 4.4e-13 77.4 51 80.4
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 5.8e-13 77.0 63 63.5
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 5.8e-13 77.0 63 63.5
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 7.5e-13 76.6 52 76.9
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 7.5e-13 76.6 51 78.4
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 7.5e-13 76.6 51 78.4
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 9.8e-13 76.3 51 80.4
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 1.3e-12 75.9 49 77.6
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 1.3e-12 75.9 52 76.9
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 1.7e-12 75.5 51 76.5
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 2.2e-12 75.1 51 76.5
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 2.9e-12 74.7 51 74.5
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 2.9e-12 74.7 51 74.5
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 3.7e-12 74.3 50 78.0
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 3.7e-12 74.3 50 78.0
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 4.9e-12 73.9 51 74.5
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 4.9e-12 73.9 51 74.5
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 6.4e-12 73.6 51 74.5
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 1.1e-11 72.8 51 76.5
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 1.4e-11 72.4 51 78.4
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 2.4e-11 71.6 47 80.9
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 2.4e-11 71.6 47 80.9
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 3.2e-11 71.2 51 78.4
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 3.2e-11 71.2 47 78.7
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 7.0e-11 70.1 47 78.7
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 9.2e-11 69.7 51 78.4
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 9.2e-11 69.7 63 68.3
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 1.6e-10 68.9 51 72.5
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 3.5e-10 67.8 51 72.5
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 6.0e-10 67.0 50 72.0
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 6.0e-10 67.0 51 76.5
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 1.0e-09 66.2 63 63.5
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 1.3e-09 65.9 48 79.2
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 2.3e-09 65.1 48 77.1
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 3.0e-09 64.7 40 87.5
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 5.0e-09 63.9 44 75.0
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 6.6e-09 63.5 42 78.6
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 1.1e-08 62.8 54 64.8
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 1.1e-08 62.8 40 80.0
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 1.5e-08 62.4 52 63.5
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 1.5e-08 62.4 54 59.3
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 1.9e-08 62.0 52 65.4
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 1.9e-08 62.0 51 66.7
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 2.5e-08 61.6 40 80.0
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 3.3e-08 61.2 42 71.4
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 4.3e-08 60.8 40 80.0
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 4.3e-08 60.8 40 80.0
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 5.6e-08 60.5 52 61.5
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.6e-08 60.5 40 80.0
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 7.3e-08 60.1 44 65.9
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 7.3e-08 60.1 42 73.8
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 1.2e-07 59.3 46 71.7
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 1.6e-07 58.9 37 81.1
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 2.1e-07 58.5 38 73.7
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 2.1e-07 58.5 52 63.5
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 3.6e-07 57.8 44 63.6
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 3.6e-07 57.8 45 66.7
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 4.7e-07 57.4 39 76.9
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 4.7e-07 57.4 40 77.5
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 2.3e-06 55.1 63 50.8
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 5.2e-06 53.9 51 54.9
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 5.2e-06 53.9 42 64.3
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 5.2e-06 53.9 42 64.3
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 6.8e-06 53.5 42 66.7
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 8.9e-06 53.1 54 55.6
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 8.9e-06 53.1 63 46.0


User provided reference genes

Program Settings