Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 3.3e-44 181.4 96 100.0
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 3.2e-31 138.3 96 80.2
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 3.1e-26 121.7 96 70.8
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 1.5e-25 119.4 96 70.8
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 2.6e-25 118.6 96 68.8
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 2.6e-25 118.6 96 68.8
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 2.2e-24 115.5 96 66.7
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 2.2e-24 115.5 96 66.7
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 4.9e-24 114.4 96 71.9
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 8.3e-24 113.6 96 68.8
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 8.3e-24 113.6 96 68.8
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 1.9e-23 112.5 96 68.8
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 4.1e-23 111.3 96 64.6
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 5.4e-23 110.9 96 67.7
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 9.2e-23 110.2 98 65.3
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 1.6e-22 109.4 96 64.6
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 1.6e-22 109.4 96 64.6
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.6e-22 109.4 96 67.7
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 1.6e-22 109.4 96 63.5
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 2.1e-22 109.0 96 63.5
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 2.1e-22 109.0 96 62.5
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 2.1e-22 109.0 96 64.6
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 2.7e-22 108.6 96 65.6
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 4.6e-22 107.8 96 63.5
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 4.6e-22 107.8 96 63.5
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 6.0e-22 107.5 96 63.5
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 6.0e-22 107.5 96 65.6
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 7.8e-22 107.1 98 69.4
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 7.8e-22 107.1 96 63.5
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 7.8e-22 107.1 99 66.7
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 7.8e-22 107.1 85 69.4
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 7.8e-22 107.1 96 64.6
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 1.0e-21 106.7 96 61.5
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 1.0e-21 106.7 96 63.5
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 1.3e-21 106.3 96 61.5
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 1.3e-21 106.3 96 61.5
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 1.3e-21 106.3 96 61.5
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 1.3e-21 106.3 96 61.5
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 1.3e-21 106.3 96 61.5
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 2.3e-21 105.5 96 62.5
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 8.6e-21 103.6 96 64.6
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 5.6e-20 100.9 96 60.4
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 5.6e-20 100.9 96 60.4
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 7.3e-20 100.5 96 62.5
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 7.3e-20 100.5 96 64.6
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 7.3e-20 100.5 96 59.4
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 9.5e-20 100.1 96 61.5
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 2.1e-19 99.0 96 63.5
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 2.8e-19 98.6 96 62.5
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 2.8e-19 98.6 96 58.3
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 3.6e-19 98.2 96 61.5
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 4.7e-19 97.8 96 61.5
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 4.7e-19 97.8 96 59.4
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 6.2e-19 97.4 96 61.5
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 6.2e-19 97.4 94 57.4
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 8.1e-19 97.1 118 50.8
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 2.3e-18 95.5 103 56.3
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 3.1e-18 95.1 96 61.5
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 4.0e-18 94.7 51 98.0
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 5.2e-18 94.4 85 64.7
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 1.5e-17 92.8 96 59.4
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 3.4e-17 91.7 87 59.8
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 5.8e-17 90.9 131 47.3
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 7.6e-17 90.5 87 62.1
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 7.6e-17 90.5 96 56.2
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 7.6e-17 90.5 85 61.2
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 1.3e-16 89.7 96 60.4
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 1.7e-16 89.4 96 57.3
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.7e-16 89.4 85 63.5
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 1.7e-16 89.4 96 58.3
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 1.7e-16 89.4 85 61.2
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 3.7e-16 88.2 85 60.0
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 3.7e-16 88.2 96 57.3
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 3.7e-16 88.2 87 56.3
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 4.9e-16 87.8 96 61.5
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 4.9e-16 87.8 86 62.8
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 1.1e-15 86.7 85 58.8
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 1.1e-15 86.7 87 58.6
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 1.4e-15 86.3 118 49.2
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 1.4e-15 86.3 85 61.2
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 2.4e-15 85.5 85 60.0
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 2.4e-15 85.5 85 55.3
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 4.1e-15 84.7 85 60.0
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 5.4e-15 84.3 85 54.1
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 7.1e-15 84.0 97 54.6
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 7.1e-15 84.0 90 60.0
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 7.1e-15 84.0 92 56.5
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 2.1e-14 82.4 85 57.6
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 6.0e-14 80.9 61 65.6
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 7.8e-14 80.5 96 52.1
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.3e-13 79.7 80 61.2
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.7e-13 79.3 85 57.6
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 3.0e-13 78.6 85 58.8
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 5.1e-13 77.8 51 78.4
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 8.6e-13 77.0 97 52.6
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 8.6e-13 77.0 73 61.6
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 1.9e-12 75.9 92 54.3
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 2.5e-12 75.5 47 83.0
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 3.3e-12 75.1 78 55.1
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 1.2e-11 73.2 96 50.0
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 1.6e-11 72.8 89 50.6
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 2.6e-09 65.5 93 49.5
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 4.4e-09 64.7 109 41.3
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 5.8e-09 64.3 105 43.8
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 9.9e-09 63.5 104 44.2
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 1.3e-08 63.2 107 42.1
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.3e-08 63.2 105 40.0
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.3e-08 63.2 106 40.6
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.3e-08 63.2 109 41.3
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 2.2e-08 62.4 111 37.8
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.8e-08 61.6 108 40.7
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 4.9e-08 61.2 86 45.3
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 4.9e-08 61.2 45 68.9
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 4.9e-08 61.2 96 43.8
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 6.4e-08 60.8 102 39.2
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 8.4e-08 60.5 86 45.3
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 8.4e-08 60.5 86 45.3
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 8.4e-08 60.5 100 42.0
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 1.4e-07 59.7 102 38.2
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.4e-07 59.7 105 43.8
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 1.4e-07 59.7 83 48.2
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 1.9e-07 59.3 105 41.9
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.9e-07 59.3 101 44.6
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 1.9e-07 59.3 97 40.2
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 1.9e-07 59.3 102 39.2
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 2.4e-07 58.9 100 41.0
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 3.2e-07 58.5 91 41.8
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 4.2e-07 58.2 100 42.0
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 4.2e-07 58.2 108 39.8
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 7.1e-07 57.4 111 41.4
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 7.1e-07 57.4 107 38.3
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 7.1e-07 57.4 94 45.7
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 7.1e-07 57.4 87 41.4
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 9.3e-07 57.0 71 47.9
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 9.3e-07 57.0 71 47.9
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 9.3e-07 57.0 109 39.4
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 9.3e-07 57.0 101 43.6
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 9.3e-07 57.0 101 43.6
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 1.6e-06 56.2 109 37.6
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.6e-06 56.2 94 41.5
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 1.6e-06 56.2 109 41.3
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 2.1e-06 55.8 109 37.6
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 4.6e-06 54.7 53 52.8
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 4.6e-06 54.7 107 39.3
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 4.6e-06 54.7 107 39.3
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 4.6e-06 54.7 87 42.5
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 6.0e-06 54.3 109 37.6
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 7.8e-06 53.9 109 36.7
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 7.8e-06 53.9 109 36.7
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 7.8e-06 53.9 108 39.8


User provided reference genes

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