Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.2e-263 912.5 437 100.0
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 4.1e-235 817.8 559 74.2
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 9.1e-211 736.9 668 60.3
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.3e-204 716.5 517 67.9
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.2e-197 693.3 516 66.1
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 7.8e-194 680.6 528 63.6
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 1.6e-186 656.4 517 62.1
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 4.6e-186 654.8 500 64.0
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 7.8e-186 654.1 518 62.2
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 2.3e-185 652.5 520 61.2
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 8.6e-185 650.6 509 61.7
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 3.3e-184 648.7 517 62.1
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 3.3e-184 648.7 509 61.5
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 4.3e-184 648.3 517 62.1
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 9.5e-184 647.1 514 62.8
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 1.1e-182 643.7 507 62.1
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 1.4e-182 643.3 509 60.9
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.4e-182 643.3 498 62.9
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 6.8e-182 641.0 447 66.7
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 1.5e-181 639.8 503 61.2
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 5.8e-181 637.9 479 64.1
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 7.5e-181 637.5 427 68.9
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 1.7e-180 636.3 510 60.2
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 1.1e-179 633.6 506 60.7
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 1.2e-178 630.2 514 59.7
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 1.6e-178 629.8 428 68.0
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 2.1e-178 629.4 506 60.1
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 3.5e-178 628.6 428 68.0
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 6.0e-178 627.9 526 58.9
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 3.0e-177 625.5 494 61.9
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 8.6e-177 624.0 428 66.8
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 1.1e-176 623.6 428 67.1
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 3.3e-176 622.1 509 59.7
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 4.3e-176 621.7 506 60.7
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 1.6e-175 619.8 428 67.3
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.1e-175 619.4 509 59.7
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 1.8e-174 616.3 508 59.3
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 3.1e-174 615.5 507 59.6
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.1e-174 615.5 506 59.3
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 8.9e-174 614.0 428 66.8
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 7.6e-173 610.9 428 65.4
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.9e-172 608.2 493 60.4
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 4.9e-172 608.2 498 61.0
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 8.4e-172 607.4 428 65.2
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 1.9e-171 606.3 522 58.4
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 1.9e-171 606.3 512 58.6
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 4.2e-171 605.1 413 67.8
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 9.2e-171 604.0 427 64.9
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 2.7e-170 602.4 425 64.0
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 2.7e-170 602.4 505 58.0
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 3.5e-170 602.1 424 65.8
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 6.0e-170 601.3 516 57.4
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 7.8e-170 600.9 428 63.6
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 5.1e-169 598.2 428 63.8
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 1.1e-168 597.0 425 64.7
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 1.1e-168 597.0 605 56.5
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 1.9e-168 596.3 426 65.0
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 7.3e-168 594.3 428 63.1
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 1.2e-167 593.6 427 63.9
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 1.6e-167 593.2 428 64.3
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 4.7e-167 591.7 423 64.3
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 1.1e-166 590.5 487 59.3
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 1.4e-166 590.1 517 55.7
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 1.4e-166 590.1 485 59.2
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 2.4e-166 589.3 427 62.5
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 9.0e-166 587.4 459 61.0
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 5.8e-165 584.7 429 63.2
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 7.6e-165 584.3 488 58.2
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 1.7e-164 583.2 488 58.0
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 2.9e-164 582.4 427 61.8
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 1.1e-163 580.5 462 58.9
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 3.2e-163 578.9 489 57.9
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 3.2e-163 578.9 489 57.9
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 3.2e-163 578.9 482 58.7
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 5.4e-163 578.2 428 62.9
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 7.1e-163 577.8 433 60.3
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 7.1e-163 577.8 428 62.1
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 9.3e-163 577.4 447 61.7
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 2.1e-162 576.2 428 62.1
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 2.7e-162 575.9 430 62.6
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 7.8e-162 574.3 428 61.9
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 1.0e-161 573.9 334 75.7
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 1.0e-161 573.9 334 75.7
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 1.3e-161 573.5 482 58.5
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 3.0e-161 572.4 429 62.5
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.9e-161 572.0 538 54.6
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 2.5e-160 569.3 429 62.0
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 2.5e-160 569.3 332 75.6
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 2.5e-160 569.3 514 55.6
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 1.6e-159 566.6 504 55.8
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.1e-158 563.9 536 53.5
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 5.4e-155 551.6 427 60.0
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.1e-154 549.7 428 57.9
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 6.0e-154 548.1 425 60.0
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 7.9e-154 547.7 427 67.7
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 1.0e-153 547.4 428 60.0
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 1.8e-153 546.6 334 74.0
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 2.5e-152 542.7 346 70.2
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 5.6e-152 541.6 432 57.6
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 5.3e-150 535.0 427 59.7
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 6.9e-150 534.6 427 55.5
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 7.6e-149 531.2 429 60.6
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 9.3e-147 524.2 464 55.0
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 7.9e-146 521.2 321 70.7
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 8.7e-145 517.7 369 64.8
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 1.3e-143 513.8 389 63.0
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 2.8e-143 512.7 383 64.8
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 4.9e-140 501.9 427 57.8
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 1.2e-138 497.3 368 63.0
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 2.7e-138 496.1 402 60.2
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 5.7e-136 488.4 268 78.7
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 6.1e-130 468.4 428 54.9
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 3.0e-129 466.1 415 52.8
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 1.3e-127 460.7 426 50.9
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.7e-127 460.3 427 51.3
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 9.1e-126 454.5 352 61.1
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 2.5e-123 446.4 423 48.9
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 5.5e-123 445.3 338 58.3
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 8.2e-111 404.8 218 79.8
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 4.7e-106 389.0 426 46.9
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.2e-86 323.2 184 76.6
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.2e-78 295.0 252 57.5
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 1.6e-77 294.3 436 36.7
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.6e-66 257.7 148 73.0
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 5.2e-57 226.1 269 44.6
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.9e-54 217.6 110 83.6
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 2.5e-51 207.2 148 58.1
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 5.6e-51 206.1 116 76.7
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 8.1e-50 202.2 118 74.6
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 3.9e-44 183.3 109 73.4
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 2.4e-38 164.1 185 47.0
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.6e-35 152.9 294 34.7
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 1.5e-19 101.7 60 70.0
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.4e-17 94.4 61 65.6
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 2.9e-15 87.4 160 35.6
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 8.8e-12 75.9 227 30.0
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 2.0e-11 74.7 166 33.7
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 2.6e-08 64.3 41 63.4
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 2.5e-06 57.8 34 73.5


User provided reference genes

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