Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 0.0e+00 1370.5 666 100.0
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 1.2e-217 760.4 721 60.1
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 4.8e-211 738.4 668 60.3
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 4.2e-191 672.2 677 55.1
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 4.7e-182 642.1 678 52.5
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 2.3e-181 639.8 690 51.9
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 2.4e-178 629.8 325 84.3
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 5.3e-178 628.6 325 84.6
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 2.0e-177 626.7 325 84.0
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 7.2e-175 618.2 325 83.4
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 1.6e-174 617.1 325 82.8
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 2.7e-174 616.3 325 83.7
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 3.6e-174 615.9 325 83.4
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 6.1e-174 615.1 325 82.5
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 4.0e-173 612.5 325 82.8
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 4.0e-173 612.5 325 81.8
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 5.2e-173 612.1 325 82.2
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 6.8e-173 611.7 325 83.4
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 3.4e-172 609.4 325 82.2
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 3.4e-172 609.4 325 82.2
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 4.4e-172 609.0 325 82.5
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 7.5e-172 608.2 325 81.2
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 2.8e-171 606.3 325 80.9
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 2.8e-171 606.3 325 82.2
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 2.8e-171 606.3 325 81.5
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 4.1e-170 602.4 325 81.2
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 7.0e-170 601.7 325 80.3
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 1.6e-169 600.5 325 80.3
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.6e-169 600.5 325 80.6
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 3.5e-169 599.4 325 80.6
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 5.9e-169 598.6 325 81.5
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 1.1e-167 594.3 325 79.7
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 3.2e-167 592.8 325 80.3
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 4.2e-167 592.4 326 79.8
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 4.2e-167 592.4 325 79.7
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 7.2e-167 591.7 325 78.8
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 1.2e-166 590.9 325 80.0
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 4.7e-166 589.0 325 79.7
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 1.0e-165 587.8 325 79.7
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 1.0e-165 587.8 325 79.4
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 3.0e-165 586.3 325 77.8
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 4.0e-165 585.9 345 75.9
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 6.8e-165 585.1 325 79.1
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 2.0e-164 583.6 325 76.9
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 5.7e-164 582.0 325 77.8
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 9.8e-164 581.3 325 77.2
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 2.2e-163 580.1 325 77.2
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 3.7e-163 579.3 325 77.5
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 3.7e-163 579.3 327 77.7
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 4.9e-163 578.9 327 77.7
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 4.9e-163 578.9 327 77.7
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 4.9e-163 578.9 325 80.0
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 4.9e-163 578.9 325 76.9
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 6.3e-163 578.6 325 76.0
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 6.3e-163 578.6 325 78.2
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 1.8e-162 577.0 325 76.6
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 2.4e-162 576.6 325 75.7
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 3.1e-162 576.2 325 76.9
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 4.1e-162 575.9 325 78.2
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 5.4e-162 575.5 325 77.5
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 7.0e-162 575.1 325 76.6
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.2e-161 574.3 309 81.6
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.2e-161 574.3 325 77.5
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 3.5e-161 572.8 325 76.9
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 4.5e-161 572.4 336 74.7
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 6.6e-160 568.5 325 74.5
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 8.6e-160 568.2 326 76.4
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 1.9e-159 567.0 330 72.7
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 3.3e-159 566.2 327 75.8
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 3.3e-159 566.2 326 76.4
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 2.1e-158 563.5 326 76.1
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 2.8e-158 563.1 326 75.5
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 1.0e-157 561.2 326 75.2
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 1.0e-157 561.2 326 74.2
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 1.8e-157 560.5 325 73.2
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 3.0e-157 559.7 326 75.2
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 4.0e-157 559.3 326 74.2
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 8.9e-157 558.1 327 75.2
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 8.9e-157 558.1 327 75.2
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 1.5e-156 557.4 325 75.7
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 1.5e-156 557.4 327 75.2
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 1.5e-156 557.4 326 73.9
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 3.4e-156 556.2 364 69.0
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 1.7e-155 553.9 326 74.8
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 2.2e-155 553.5 327 76.1
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 2.9e-155 553.1 326 74.8
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 2.9e-155 553.1 344 72.4
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 4.9e-155 552.4 329 74.2
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 6.4e-155 552.0 326 74.2
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.8e-154 550.4 360 70.6
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 3.2e-154 549.7 322 75.5
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 2.0e-153 547.0 799 45.1
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 2.3e-152 543.5 325 73.2
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 6.6e-152 542.0 325 72.3
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 6.6e-152 542.0 355 69.6
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 1.1e-151 541.2 734 45.4
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 5.6e-151 538.9 386 65.0
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.6e-150 536.2 325 70.2
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 3.1e-149 533.1 326 71.8
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 1.5e-148 530.8 332 69.0
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 2.2e-147 526.9 321 71.0
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 1.2e-142 511.1 326 72.4
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.1e-141 508.1 361 64.0
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.8e-141 507.3 325 64.9
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.5e-140 504.2 589 52.1
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 9.9e-140 501.5 266 80.8
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 4.1e-138 496.1 327 70.3
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 1.6e-137 494.2 327 70.0
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 1.7e-136 490.7 268 78.7
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 5.6e-135 485.7 324 69.4
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 4.0e-133 479.6 266 78.2
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 2.5e-127 460.3 325 62.8
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 6.9e-125 452.2 325 61.5
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 2.0e-124 450.7 325 64.9
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 2.9e-123 446.8 325 60.6
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 2.3e-120 437.2 325 59.7
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 2.5e-119 433.7 249 77.1
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 4.3e-119 433.0 327 57.2
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 1.6e-110 404.4 218 79.4
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 4.2e-106 389.8 326 56.7
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.2e-86 324.3 184 77.2
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 1.2e-76 292.0 315 43.2
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 5.3e-69 266.5 149 78.5
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.1e-66 258.8 148 74.3
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 3.6e-57 227.3 269 44.6
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.5e-55 221.9 110 85.5
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.1e-50 205.7 118 76.3
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 5.5e-50 203.4 109 80.7
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 5.5e-50 203.4 148 58.1
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 9.2e-45 186.0 109 76.1
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 2.0e-39 168.3 185 48.1
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 7.5e-31 139.8 148 45.9
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 1.0e-19 102.8 60 71.7
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.8e-17 94.7 61 65.6
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 5.8e-15 87.0 148 38.5
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 4.0e-08 64.3 41 63.4


User provided reference genes

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