Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 0.0e+00 2603.5 1283 100.0
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 0.0e+00 2465.3 1337 91.7
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 0.0e+00 1648.6 1312 67.5
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 0.0e+00 1627.5 1308 66.0
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 0.0e+00 1425.2 1306 60.9
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 2.2e-268 929.9 1306 43.5
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 6.9e-267 924.9 1317 44.8
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 5.5e-264 915.2 1319 43.6
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 9.4e-264 914.4 1320 43.7
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 1.3e-257 894.0 1306 42.5
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 2.3e-254 883.2 1316 42.2
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 2.8e-252 876.3 1316 42.7
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.4e-251 874.0 1323 43.2
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 1.2e-247 860.9 1328 42.7
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.1e-247 860.1 1319 42.0
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 3.6e-247 859.4 1320 43.4
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 1.0e-246 857.8 1320 42.3
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.3e-246 856.7 1325 41.7
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.2e-246 855.5 1326 42.0
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 3.4e-245 852.8 1331 41.5
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 8.3e-244 848.2 1253 42.5
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 1.4e-243 847.4 1315 41.1
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 2.5e-240 836.6 1317 42.0
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.8e-235 820.5 1309 40.7
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 2.7e-234 816.6 1309 40.5
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 1.5e-229 800.8 1301 39.7
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.6e-223 779.6 1281 39.3
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 6.4e-220 768.8 1284 39.2
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 6.4e-220 768.8 1280 39.1
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 6.0e-218 762.3 1249 39.6
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 2.8e-215 753.4 1324 39.9
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 4.7e-207 726.1 1365 36.8
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.8e-196 689.9 1439 36.1
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 1.3e-188 664.8 1096 41.4
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 1.1e-182 645.2 1285 37.2
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 1.8e-182 644.4 1287 37.2
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 1.1e-179 635.2 1285 37.2
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 1.8e-177 627.9 1287 35.8
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 6.2e-175 619.4 1305 33.9
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 4.5e-173 613.2 1251 36.4
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.7e-172 611.3 1340 34.8
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 2.5e-171 607.4 1049 37.7
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 3.9e-169 600.1 1280 35.8
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 1.5e-168 598.2 1309 35.6
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.1e-163 582.0 1336 33.6
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 1.1e-163 582.0 1280 35.4
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 1.1e-163 582.0 1272 35.4
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 2.5e-160 570.9 1261 35.4
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 1.2e-157 562.0 1313 34.3
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 1.2e-157 562.0 1278 35.1
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 6.5e-156 556.2 1277 34.8
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 3.0e-153 547.4 1300 34.0
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 9.7e-152 542.3 1286 33.7
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 5.3e-150 536.6 1275 33.9
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 7.0e-150 536.2 1130 36.1
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 2.6e-149 534.3 1288 33.4
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 1.3e-148 531.9 809 41.8
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 4.7e-146 523.5 1303 32.7
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 2.8e-135 487.6 1300 31.4
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 3.1e-134 484.2 1273 33.2
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.1e-131 475.7 1308 31.7
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 5.7e-120 436.8 1323 30.5
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 2.7e-117 427.9 1300 31.0
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 3.6e-114 417.5 1289 31.1
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 8.9e-113 412.9 1289 30.3
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 2.2e-111 408.3 1366 30.0
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 1.2e-109 402.5 1293 30.9
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 2.0e-109 401.7 1296 30.2
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 3.5e-109 401.0 1403 28.8
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 7.3e-107 393.3 1274 30.0
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 3.7e-103 380.9 1284 29.5
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 3.1e-97 361.3 1329 28.2
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 3.7e-95 354.4 1347 29.3
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 6.0e-93 347.1 564 40.4
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 7.6e-80 303.5 1276 27.0
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.7e-79 302.4 446 43.7
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.9e-79 300.8 446 43.5
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 2.4e-78 298.5 561 36.2
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.4e-78 297.4 446 43.5
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 2.1e-77 295.4 1354 26.2
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 2.3e-76 292.0 1280 26.4
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 3.0e-76 291.6 1287 26.7
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 6.9e-73 280.4 1285 26.2
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 2.6e-72 278.5 1295 27.2
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.2e-70 271.2 1310 26.0
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 4.6e-69 267.7 1313 25.4
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 5.1e-68 264.2 395 41.3
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.3e-66 259.6 747 31.5
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.4e-65 256.1 314 48.1
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.8e-65 255.8 1310 25.6
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 9.0e-65 253.4 1309 25.8
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 9.0e-65 253.4 1299 26.0
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 4.2e-62 244.6 1187 25.9
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 7.1e-62 243.8 1364 26.7
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.7e-61 241.9 1293 26.1
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.6e-61 241.1 446 37.9
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 2.3e-60 238.8 272 48.5
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 3.0e-60 238.4 1290 25.9
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 3.7e-58 231.5 1277 26.5
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 1.8e-57 229.2 1322 25.5
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 3.1e-57 228.4 1167 25.7
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 4.5e-56 224.6 1148 24.3
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 3.2e-54 218.4 1281 26.1
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 2.1e-53 215.7 1280 25.6
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 7.9e-53 213.8 1331 24.9
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 2.3e-52 212.2 1320 26.1
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.6e-50 206.1 1238 24.4
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 2.2e-50 205.7 1331 24.8
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 1.5e-48 199.5 1103 24.8
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 2.2e-47 195.7 1262 25.3
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 2.2e-47 195.7 1262 25.3
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 1.4e-46 193.0 1279 25.4
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 2.5e-46 192.2 1241 25.7
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 7.2e-46 190.7 1259 25.1
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 7.2e-46 190.7 1259 24.9
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 3.6e-45 188.3 691 29.5
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 1.8e-44 186.0 807 26.4
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 3.3e-43 181.8 1269 25.5
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 5.7e-43 181.0 1269 25.5
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 9.7e-43 180.3 1269 25.4
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 1.1e-41 176.8 1289 25.0
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 1.4e-41 176.4 1251 23.3
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 1.5e-40 172.9 577 29.3
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.0e-39 170.2 1279 23.3
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 2.5e-38 165.6 1195 24.6
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 1.6e-37 162.9 1093 23.9
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 6.1e-37 161.0 1249 25.5
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 3.0e-36 158.7 1267 25.1
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 6.7e-36 157.5 1281 24.7
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.3e-34 153.3 242 43.0
FAN05G2999 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.8e-34 152.1 268 38.1
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 2.8e-34 152.1 1316 23.6
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 3.1e-33 148.7 1302 22.4
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 1.2e-32 146.7 1295 23.2
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 7.7e-32 144.1 1137 23.0
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 2.5e-30 139.0 1324 24.1
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 2.5e-30 139.0 1376 23.4
TAR626G1566 Trochodendron aralioides HOM05D004021 ORTHO05D003767 6.1e-29 134.4 359 30.6
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 8.8e-28 130.6 934 24.3
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 1.1e-27 130.2 1298 23.6
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 2.0e-27 129.4 1032 23.4
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 4.4e-27 128.3 638 27.9
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 1.1e-25 123.6 117 55.6
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 1.6e-24 119.8 788 24.5
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 3.8e-23 115.2 1099 24.2
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 5.5e-22 111.3 1306 23.8
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 3.6e-21 108.6 792 24.7
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 1.8e-20 106.3 217 38.2
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 8.8e-20 104.0 674 25.2
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 4.8e-18 98.2 686 23.9
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 8.3e-18 97.4 116 44.8
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 1.1e-17 97.1 109 47.7
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 1.8e-17 96.3 1087 22.7
Lalb_Chr22g0352251 Lupinus albus HOM05D004021 ORTHO05D003767 2.4e-17 95.9 273 28.2
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 4.1e-17 95.1 131 42.0
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 2.7e-16 92.4 113 43.4
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 4.5e-16 91.7 1258 22.4
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 1.7e-15 89.7 449 28.1
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 8.5e-15 87.4 110 43.6
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 9.4e-14 84.0 149 36.9
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 2.1e-13 82.8 595 25.0
HanXRQChr09g0276591 Helianthus annuus HOM05D004021 ORTHO05D003767 6.1e-13 81.3 1205 22.5
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.4e-12 80.1 96 41.7
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 4.0e-12 78.6 119 40.3
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 4.4e-11 75.1 307 28.0
Nitab4.5_0000406g0040 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.3e-10 73.6 646 23.8
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 8.3e-10 70.9 70 45.7
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 8.3e-10 70.9 513 24.0
QL01p024072 Quercus lobata HOM05D001734 ORTHO05D020518 2.4e-09 69.3 97 45.4
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 7.0e-09 67.8 472 23.7
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 9.1e-09 67.4 81 40.7
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 9.1e-09 67.4 113 38.1
unitig_85.g27153 Utricularia gibba HOM05D004021 ORTHO05D003767 1.2e-08 67.0 127 35.4
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 4.5e-08 65.1 84 44.0
VMungo0647G2380 Vigna mungo HOM05D058389 ORTHO05D003767 4.5e-08 65.1 393 26.0
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 5.9e-08 64.7 241 29.9
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 7.7e-08 64.3 64 40.6
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 2.3e-07 62.8 113 32.7
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 6.6e-07 61.2 64 42.2
Oeu015740.1 Olea europaea HOM05D004021 ORTHO05D003767 1.9e-06 59.7 518 25.3
Os01g0229300 Oryza sativa ssp. japonica HOM05D018893 ORTHO05D020945 3.3e-06 58.9 188 30.9
Aqoxy4G01254 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 5.6e-06 58.2 403 23.1


User provided reference genes

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