Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1628.2 809 100.0
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1581.2 809 96.7
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 0.0e+00 1507.7 815 92.9
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 0.0e+00 1339.7 810 80.7
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 0.0e+00 1203.7 814 73.0
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 0.0e+00 1201.8 810 71.9
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 0.0e+00 1191.4 816 71.0
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 0.0e+00 1172.9 820 70.4
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1172.5 816 70.5
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 0.0e+00 1160.6 821 69.8
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1156.7 816 70.6
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 0.0e+00 1155.6 815 68.8
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 0.0e+00 1155.6 811 69.9
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 0.0e+00 1154.8 814 69.8
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 0.0e+00 1153.7 818 69.8
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 0.0e+00 1147.5 813 69.1
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 0.0e+00 1142.9 878 65.5
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 0.0e+00 1138.6 818 68.5
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1137.5 817 68.8
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1137.5 818 68.3
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 0.0e+00 1137.1 815 69.2
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1134.0 817 68.7
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1133.6 818 68.0
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 0.0e+00 1132.9 816 68.5
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 0.0e+00 1132.1 817 69.3
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 0.0e+00 1125.9 816 68.5
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 0.0e+00 1124.0 816 68.4
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 0.0e+00 1113.6 812 67.9
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 0.0e+00 1112.1 813 68.1
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 0.0e+00 1110.5 813 67.9
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 0.0e+00 1109.4 815 67.7
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 0.0e+00 1105.9 816 66.3
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 0.0e+00 1100.9 785 69.6
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 0.0e+00 1098.2 816 67.8
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 0.0e+00 1097.4 814 67.3
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 0.0e+00 1092.4 814 65.1
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 0.0e+00 1087.8 817 67.3
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 0.0e+00 1085.1 814 65.0
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 0.0e+00 1083.9 813 66.7
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 0.0e+00 1082.4 826 65.3
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 0.0e+00 1080.1 809 65.6
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 0.0e+00 1077.8 876 62.7
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 8.7e-308 1060.1 851 61.8
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 4.3e-307 1057.7 812 64.9
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 1.1e-305 1053.1 835 64.7
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 3.1e-305 1051.6 816 63.1
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 2.6e-304 1048.5 813 65.2
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 6.5e-303 1043.9 808 63.2
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 5.5e-302 1040.8 839 62.8
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 7.2e-302 1040.4 808 64.0
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 1.6e-301 1039.3 815 63.3
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 6.1e-301 1037.3 812 62.4
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 1.8e-300 1035.8 809 63.4
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 2.5e-299 1031.9 816 63.7
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 1.6e-298 1029.2 811 62.4
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 2.2e-298 1028.9 816 62.5
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 2.2e-298 1028.9 808 61.8
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 2.0e-296 1022.3 809 63.2
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 2.2e-295 1018.8 811 63.3
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 5.0e-295 1017.7 812 62.6
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 6.5e-295 1017.3 815 61.7
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 8.5e-295 1016.9 815 62.5
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 1.9e-294 1015.8 815 64.2
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 4.6e-293 1011.1 815 62.1
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 7.9e-293 1010.4 816 63.5
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 2.3e-292 1008.8 816 63.0
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 8.8e-292 1006.9 817 61.9
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 1.1e-291 1006.5 827 62.0
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 1.5e-291 1006.1 821 61.4
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 3.3e-291 1005.0 583 85.1
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 4.4e-291 1004.6 816 63.4
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 2.2e-290 1002.3 820 61.0
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 8.2e-290 1000.3 822 61.2
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.4e-289 999.6 820 60.9
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 2.0e-288 995.7 821 60.8
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 2.6e-288 995.3 815 60.6
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 1.7e-287 992.6 808 61.4
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 7.2e-286 987.3 819 60.9
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 2.7e-285 985.3 819 60.7
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 1.0e-284 983.4 819 60.6
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 1.0e-284 983.4 819 60.6
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 3.9e-284 981.5 827 60.3
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 3.7e-282 974.9 825 59.3
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 3.2e-278 961.8 831 60.2
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 5.2e-276 954.5 826 59.2
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 3.2e-270 935.3 809 58.2
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 1.8e-260 902.9 828 57.6
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.5e-259 899.8 809 55.7
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 1.5e-259 899.8 812 55.4
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 2.6e-259 899.0 818 56.5
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 3.5e-256 888.6 818 56.2
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 1.2e-251 873.6 816 55.3
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 3.4e-251 872.1 623 66.3
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 4.3e-246 855.1 822 53.8
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 8.9e-244 847.4 811 53.3
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 9.8e-243 844.0 744 57.9
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 4.9e-242 841.6 823 52.5
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 1.6e-229 800.0 891 50.6
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 1.7e-223 780.0 813 49.9
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 2.8e-221 772.7 537 69.5
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 1.8e-196 690.3 820 47.2
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 2.0e-195 686.8 822 47.1
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 5.1e-191 672.2 849 45.6
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 5.1e-191 672.2 824 44.3
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 3.0e-183 646.4 461 69.2
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 5.9e-179 632.1 825 45.6
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 9.1e-164 581.6 586 53.6
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 3.6e-160 569.7 819 42.6
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 3.6e-160 569.7 848 38.9
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 2.7e-155 553.5 678 45.6
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.2e-154 550.4 479 59.9
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 2.0e-142 510.8 839 38.5
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 3.4e-142 510.0 821 40.6
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 1.3e-141 508.1 859 37.7
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 2.4e-140 503.8 826 40.2
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 1.3e-130 471.5 338 68.6
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 1.1e-124 451.8 837 35.4
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 9.6e-105 385.6 398 52.5
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 6.2e-96 356.3 708 30.9
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 2.3e-90 337.8 370 49.2
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 1.1e-68 265.8 747 29.5
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 9.4e-68 262.7 280 51.8
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 1.4e-66 258.8 279 51.3
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 1.5e-65 255.4 279 51.3
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 5.3e-63 246.9 196 64.8
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 1.7e-61 241.9 156 74.4
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 4.5e-54 217.2 214 54.2
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 9.4e-52 209.5 157 66.9
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 5.7e-49 200.3 850 23.8
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 4.0e-42 177.6 138 60.9
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 2.5e-36 158.3 132 54.5
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 3.2e-36 157.9 458 29.5
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 9.1e-31 139.8 104 64.4
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 1.2e-22 112.8 85 64.7
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 1.5e-17 95.9 60 75.0
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 1.7e-16 92.4 111 45.9
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 1.9e-15 89.0 111 45.0
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 3.2e-15 88.2 62 69.4
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 3.5e-14 84.7 70 54.3
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.5e-12 79.3 102 40.2
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 1.4e-10 72.8 46 69.6
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 2.3e-10 72.0 46 69.6
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 5.2e-10 70.9 48 66.7
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 5.2e-10 70.9 96 42.7
Cre06.g254150 Chlamydomonas reinhardtii HOM05D004669 ORTHO05D005767 3.4e-09 68.2 368 23.9
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.4e-07 62.8 86 39.5
arahy.Tifrunner.gnm1.ann1.NVD3GI Arachis hypogaea HOM05D001215 ORTHO05D001387 7.1e-07 60.5 102 37.3


User provided reference genes

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