Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013279 Carpinus fangiana HOM05D006706 ORTHO05D008794 3.5e-100 368.2 180 100.0
Haze_21755 Corylus avellana HOM05D006706 ORTHO05D008794 1.7e-94 349.4 180 95.0
CiPaw.08G020300 Carya illinoinensis HOM05D006706 ORTHO05D008794 2.8e-73 278.9 186 77.4
Haze_21752 Corylus avellana HOM05D006706 ORTHO05D008794 8.5e-70 267.3 136 93.4
QL12p025335 Quercus lobata HOM05D006706 ORTHO05D008794 3.6e-68 261.9 183 74.9
CiPaw.07G211900 Carya illinoinensis HOM05D006706 ORTHO05D008794 1.0e-62 243.8 137 85.4
RcHm_v2.0_Chr1g0366021 Rosa chinensis HOM05D006706 ORTHO05D008794 8.5e-62 240.7 181 69.1
TPR.G12362 Trifolium pratense HOM05D006706 ORTHO05D008794 1.4e-61 240.0 178 69.1
VMungo1309G0608 Vigna mungo HOM05D006706 ORTHO05D008794 2.1e-60 236.1 176 70.5
Prupe.1G459500 Prunus persica HOM05D006706 ORTHO05D008794 2.7e-60 235.7 181 68.0
Potri.018G008000 Populus trichocarpa HOM05D006706 ORTHO05D008794 3.6e-60 235.3 182 69.8
Glyma.04G075900 Glycine max HOM05D006706 ORTHO05D008794 6.1e-60 234.6 166 71.7
FAN27G0070 Fragaria x ananassa HOM05D006706 ORTHO05D008794 1.4e-59 233.4 160 71.9
FvH4_2g36680 Fragaria vesca HOM05D006706 ORTHO05D008794 3.0e-59 232.3 160 71.2
FAN20G0608 Fragaria x ananassa HOM05D006706 ORTHO05D008794 3.9e-59 231.9 160 71.2
CANSAT78G2093 Cannabis sativa HOM05D006706 ORTHO05D008794 5.1e-59 231.5 159 73.6
Duzib187G1270 Durio zibethinus HOM05D006706 ORTHO05D008794 6.7e-59 231.1 147 76.9
RcHm_v2.0_Chr6g0305051 Rosa chinensis HOM05D006706 ORTHO05D008794 6.7e-59 231.1 138 79.7
Glyma.06G077100 Glycine max HOM05D006706 ORTHO05D008794 1.1e-58 230.3 165 72.1
Psat0s1809g0040 Pisum sativum HOM05D006706 ORTHO05D008794 1.1e-58 230.3 183 65.6
Ca_15656_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 1.5e-58 229.9 184 65.8
MD08G1127800 Malus domestica HOM05D006706 ORTHO05D008794 2.6e-58 229.2 180 64.4
Ca_15664_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 3.3e-58 228.8 144 76.4
Thecc.09G008100 Theobroma cacao HOM05D006706 ORTHO05D008794 4.4e-58 228.4 183 63.9
GSVIVG01035513001 Vitis vinifera HOM05D006706 ORTHO05D008794 4.4e-58 228.4 174 64.9
Lalb_Chr23g0269141 Lupinus albus HOM05D006706 ORTHO05D008794 5.7e-58 228.0 175 69.1
Phvul.009G101700 Phaseolus vulgaris HOM05D006706 ORTHO05D008794 5.7e-58 228.0 178 67.4
PGR044G2738 Punica granatum HOM05D006706 ORTHO05D008794 5.7e-58 228.0 186 65.1
TWI34G0378 Tripterygium wilfordii HOM05D006706 ORTHO05D008794 5.7e-58 228.0 148 76.4
Cpa.g.sc23.24 Carica papaya HOM05D006706 ORTHO05D008794 7.4e-58 227.6 184 66.3
Duzib168G0001 Durio zibethinus HOM05D006706 ORTHO05D008794 7.4e-58 227.6 159 73.0
Atru.chr7.2653 Acer truncatum HOM05D006706 ORTHO05D008794 9.7e-58 227.3 123 85.4
arahy.Tifrunner.gnm1.ann1.G0PQAF Arachis hypogaea HOM05D006706 ORTHO05D008794 9.7e-58 227.3 183 66.7
Lj1g0012669 Lotus japonicus HOM05D006706 ORTHO05D008794 9.7e-58 227.3 180 67.8
Manes.03G004300 Manihot esculenta HOM05D006706 ORTHO05D008794 9.7e-58 227.3 181 67.4
Medtr3g108900 Medicago truncatula HOM05D006706 ORTHO05D008794 9.7e-58 227.3 167 70.1
COL.COLO4_19024 Corchorus olitorius HOM05D006706 ORTHO05D008794 1.7e-57 226.5 170 69.4
CSS0022194 Camellia sinensis var. sinensis HOM05D006706 ORTHO05D008794 6.3e-57 224.6 176 64.8
Sabra18G0015100 Salix brachista HOM05D006706 ORTHO05D008794 6.3e-57 224.6 169 69.8
Dinv26561 Davidia involucrata HOM05D006706 ORTHO05D008794 8.2e-57 224.2 160 71.9
Ciclev10009845m.g Citrus clementina HOM05D006706 ORTHO05D008794 1.8e-56 223.0 139 77.0
Actinidia22256 Actinidia chinensis HOM05D006706 ORTHO05D008794 2.4e-56 222.6 120 83.3
DCAR_006314 Daucus carota HOM05D006706 ORTHO05D008794 3.1e-56 222.2 119 86.6
arahy.Tifrunner.gnm1.ann1.92NGGW Arachis hypogaea HOM05D006706 ORTHO05D008794 4.1e-56 221.9 122 83.6
Rhsim07G0178100 Rhododendron simsii HOM05D006706 ORTHO05D008794 4.1e-56 221.9 169 67.5
vmacro05047 Vaccinium macrocarpon HOM05D006706 ORTHO05D008794 4.1e-56 221.9 169 68.6
Lj7C748T8 Lonicera japonica HOM05D006706 ORTHO05D008794 5.3e-56 221.5 160 66.9
Sed0007748 Sechium edule HOM05D006706 ORTHO05D008794 6.9e-56 221.1 190 63.2
AL6G21240 Arabidopsis lyrata HOM05D006706 ORTHO05D008794 1.5e-55 219.9 171 68.4
BraA03t09810Z Brassica rapa HOM05D006706 ORTHO05D008794 1.5e-55 219.9 185 62.7
PSO063G0792 Papaver somniferum HOM05D006706 ORTHO05D008794 1.5e-55 219.9 181 64.6
PSO170G0804 Papaver somniferum HOM05D006706 ORTHO05D008794 2.0e-55 219.5 137 76.6
THA.LOC104814973 Tarenaya hassleriana HOM05D006706 ORTHO05D008794 2.0e-55 219.5 173 65.3
Eucgr.C04010 Eucalyptus grandis HOM05D006706 ORTHO05D008794 2.6e-55 219.2 174 66.1
Peaxi162Scf00459g00840 Petunia axillaris HOM05D006706 ORTHO05D008794 2.6e-55 219.2 142 74.6
Hund07113 Selenicereus undatus HOM05D006706 ORTHO05D008794 3.4e-55 218.8 128 79.7
Nn3g19671 Nelumbo nucifera HOM05D006706 ORTHO05D008794 4.5e-55 218.4 151 70.9
CsaV3_2G031370 Cucumis sativus L. HOM05D006706 ORTHO05D008794 5.9e-55 218.0 141 75.2
Gorai.010G122100 Gossypium raimondii HOM05D006706 ORTHO05D008794 7.7e-55 217.6 181 65.2
BcaB01g05507 Brassica carinata HOM05D006706 ORTHO05D008794 1.0e-54 217.2 181 61.3
A03p04700 Brassica napus HOM05D006706 ORTHO05D008794 1.0e-54 217.2 182 62.6
C03p05410 Brassica napus HOM05D006706 ORTHO05D008794 1.0e-54 217.2 181 61.3
Nitab4.5_0010092g0010 Nicotiana tabacum HOM05D006706 ORTHO05D008794 1.0e-54 217.2 119 84.0
ECA246G3311 Erigeron canadensis HOM05D006706 ORTHO05D008794 1.3e-54 216.9 141 73.8
MBI14_g10732_MAGBIO Magnolia biondii HOM05D006706 ORTHO05D008794 1.7e-54 216.5 136 76.5
Solyc12g096390.2 Solanum lycopersicum HOM05D006706 ORTHO05D008794 2.2e-54 216.1 139 75.5
Sopen12g032240 Solanum pennellii HOM05D006706 ORTHO05D008794 2.2e-54 216.1 119 84.0
PGSC0003DMG400029370 Solanum tuberosum HOM05D006706 ORTHO05D008794 2.9e-54 215.7 119 83.2
AT5G10700 Arabidopsis thaliana HOM05D006706 ORTHO05D008794 5.0e-54 214.9 176 64.8
CAN.G566.65 Capsicum annuum HOM05D006706 ORTHO05D008794 6.5e-54 214.5 144 70.1
Migut.A00436 Erythranthe guttata HOM05D006706 ORTHO05D008794 8.5e-54 214.2 180 62.2
Nitab4.5_0001159g0140 Nicotiana tabacum HOM05D006706 ORTHO05D008794 8.5e-54 214.2 119 83.2
BcaB01g06271 Brassica carinata HOM05D006706 ORTHO05D008794 1.1e-53 213.8 187 61.5
Sp6g32760 Schrenkiella parvula HOM05D006706 ORTHO05D008794 1.1e-53 213.8 180 63.3
Carub.0006s0917 Capsella rubella HOM05D006706 ORTHO05D008794 1.4e-53 213.4 167 68.3
BcaC04g19291 Brassica carinata HOM05D006706 ORTHO05D008794 1.9e-53 213.0 187 59.9
Lsat_1_v5_gn_3_19441 Lactuca sativa HOM05D006706 ORTHO05D008794 1.9e-53 213.0 140 73.6
MELO3C011186.2 Cucumis melo HOM05D006706 ORTHO05D008794 3.2e-53 212.2 170 65.9
Aa31LG3G16430 Aethionema arabicum HOM05D006706 ORTHO05D008794 4.2e-53 211.8 151 70.2
CARHR202620 Cardamine hirsuta HOM05D006706 ORTHO05D008794 5.5e-53 211.5 183 61.7
HanXRQChr17g0538031 Helianthus annuus HOM05D006706 ORTHO05D008794 5.5e-53 211.5 185 61.6
SalBow4G1165 Salvia bowleyana HOM05D006706 ORTHO05D008794 5.5e-53 211.5 117 81.2
Oeu018568.1 Olea europaea HOM05D006706 ORTHO05D008794 9.4e-53 210.7 118 82.2
CDE02G4751 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 1.6e-52 209.9 164 65.9
Aqoxy7G02908 Aquilegia oxysepala HOM05D006706 ORTHO05D008794 2.7e-52 209.1 165 64.8
Thhalv10014763m.g Eutrema salsugineum HOM05D006706 ORTHO05D008794 2.7e-52 209.1 185 60.5
ATR0580G320 Amborella trichopoda HOM05D006706 ORTHO05D008794 6.1e-52 208.0 123 80.5
MSTRG.25780 Avicennia marina HOM05D006706 ORTHO05D008794 1.4e-51 206.8 125 76.0
AUR62020287 Chenopodium quinoa HOM05D006706 ORTHO05D008794 2.3e-51 206.1 156 67.3
Zm00001eb071580 Zea mays HOM05D006706 ORTHO05D008794 6.3e-49 198.0 140 67.1
Os04g0605200 Oryza sativa ssp. japonica HOM05D006706 ORTHO05D008794 5.3e-48 194.9 127 70.9
SEGI_18071 Sequoiadendron giganteum HOM05D006706 ORTHO05D008794 4.5e-47 191.8 178 56.2
HPP92_021967 Vanilla planifolia HOM05D006706 ORTHO05D008794 4.5e-47 191.8 133 70.7
HPP92_021941 Vanilla planifolia HOM05D006706 ORTHO05D008794 7.7e-47 191.0 169 60.9
Pp3c18_3890 Physcomitrium patens HOM05D006706 ORTHO05D008794 2.9e-46 189.1 179 56.4
AagrBONN_evm.TU.Sc2ySwM_228.645 Anthoceros agrestis HOM05D000036 ORTHO05D038461 1.5e-45 186.8 150 56.0
ClCG08G012660 Citrullus lanatus HOM05D006706 ORTHO05D008794 1.5e-45 186.8 202 53.5
AUR62037716 Chenopodium quinoa HOM05D006706 ORTHO05D008794 7.2e-45 184.5 133 67.7
SMO203G0167 Selaginella moellendorffii HOM05D006706 ORTHO05D008794 1.2e-44 183.7 120 70.8
MD15G1107200 Malus domestica HOM05D006706 ORTHO05D008794 3.6e-44 182.2 148 64.9
SGA_v2.0_scaffold193G40663 Striga asiatica HOM05D006706 ORTHO05D008794 2.3e-43 179.5 150 60.0
Mapoly0013s0161 Marchantia polymorpha HOM05D006706 ORTHO05D008794 2.4e-40 169.5 120 63.3
Ah.10g024780 Amaranthus hybridus HOM05D006706 ORTHO05D008794 2.5e-37 159.5 141 54.6
unitig_21.g20325 Utricularia gibba HOM05D006706 ORTHO05D008794 2.1e-36 156.4 138 52.2
Cre10.g449350 Chlamydomonas reinhardtii HOM05D006706 ORTHO05D008794 2.7e-36 156.0 141 53.9
CBR_g3167 Chara braunii HOM05D006706 ORTHO05D008794 6.1e-36 154.8 122 60.7
MCO07G367 Micromonas commoda HOM05D006706 ORTHO05D008794 4.4e-34 148.7 120 58.3
TAR636G3689 Trochodendron aralioides HOM05D006706 ORTHO05D008794 7.0e-24 114.8 110 56.4
Gohir.A06G105300 Gossypium hirsutum HOM05D006706 ORTHO05D008794 1.3e-22 110.5 110 55.5
PRCOL_00004161 Prasinoderma coloniale HOM05D006706 ORTHO05D008794 1.3e-22 110.5 120 52.5
EL10Ac2g02413 Beta vulgaris HOM05D006706 ORTHO05D008794 3.8e-22 109.0 69 72.5
Gohir.D06G107400 Gossypium hirsutum HOM05D006706 ORTHO05D008794 3.8e-22 109.0 120 53.3
Sc06g0000170 Simmondsia chinensis HOM05D006706 ORTHO05D008794 1.9e-21 106.7 57 78.9
Haze_27087 Corylus avellana HOM05D006706 ORTHO05D008794 2.8e-20 102.8 116 44.8
CDE06G2578 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 4.9e-17 92.0 66 62.1
A10p26910 Brassica napus HOM05D006706 ORTHO05D028018 9.8e-10 67.8 96 50.0
Sed0005624 Sechium edule HOM05D006706 ORTHO05D373521 2.7e-07 59.7 59 50.8


User provided reference genes

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