Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.1e-63 245.0 125 100.0
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 3.0e-58 228.4 125 94.4
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 1.8e-50 202.6 125 86.4
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 1.5e-49 199.5 123 84.6
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 3.3e-49 198.4 123 84.6
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.5e-46 188.3 120 84.2
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 1.8e-42 176.0 108 85.2
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 6.1e-27 124.4 118 60.2
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 4.0e-26 121.7 113 61.9
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 1.7e-24 116.3 112 56.2
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 2.2e-24 115.9 112 58.0
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 1.1e-23 113.6 104 58.7
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.7e-21 106.3 113 51.3
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.7e-21 106.3 111 54.1
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 3.9e-21 105.1 115 53.9
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 5.0e-21 104.8 114 52.6
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 8.6e-21 104.0 111 55.0
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.9e-20 102.8 113 52.2
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 1.9e-20 102.8 115 54.8
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 3.3e-20 102.1 114 50.9
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 3.3e-20 102.1 115 53.0
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 4.3e-20 101.7 113 51.3
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 4.3e-20 101.7 114 50.0
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 4.3e-20 101.7 111 49.5
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 5.6e-20 101.3 112 50.9
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 5.6e-20 101.3 115 48.7
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 7.3e-20 100.9 120 46.7
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 9.5e-20 100.5 113 51.3
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 9.5e-20 100.5 114 50.9
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 9.5e-20 100.5 105 52.4
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 9.5e-20 100.5 112 51.8
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 9.5e-20 100.5 112 51.8
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.2e-19 100.1 115 51.3
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 1.2e-19 100.1 107 54.2
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.6e-19 99.8 112 51.8
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.6e-19 99.8 117 53.8
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.6e-19 99.8 117 53.8
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.1e-19 99.4 108 50.0
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 2.1e-19 99.4 118 50.0
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.8e-19 99.0 105 52.4
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.6e-19 98.6 116 56.0
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 4.7e-19 98.2 106 55.7
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 4.7e-19 98.2 109 47.7
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 4.7e-19 98.2 109 47.7
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 6.2e-19 97.8 108 49.1
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 6.2e-19 97.8 105 51.4
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 1.1e-18 97.1 111 49.5
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.1e-18 97.1 116 55.2
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.4e-18 96.7 108 52.8
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 2.3e-18 95.9 115 47.0
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 2.3e-18 95.9 118 50.0
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 2.3e-18 95.9 109 45.9
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.1e-18 95.5 117 47.9
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.1e-18 95.5 117 47.9
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.1e-18 95.5 117 47.9
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.0e-18 95.1 117 47.9
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 4.0e-18 95.1 110 60.9
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 5.2e-18 94.7 113 50.4
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 6.8e-18 94.4 114 50.0
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 6.8e-18 94.4 106 50.0
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.8e-18 94.4 109 44.0
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 6.8e-18 94.4 75 64.0
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 8.9e-18 94.0 118 49.2
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 1.2e-17 93.6 129 45.0
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 1.2e-17 93.6 115 50.4
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 2.6e-17 92.4 112 48.2
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 3.4e-17 92.0 116 49.1
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 3.4e-17 92.0 115 46.1
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 3.4e-17 92.0 115 52.2
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 2.2e-16 89.4 110 50.0
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 3.7e-16 88.6 121 48.8
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 3.7e-16 88.6 113 49.6
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 8.3e-16 87.4 121 49.6
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.1e-15 87.0 114 47.4
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.4e-15 86.7 115 43.5
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.4e-15 86.7 116 48.3
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 1.4e-15 86.7 116 47.4
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 1.4e-15 86.7 126 44.4
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 1.4e-15 86.7 114 47.4
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 1.9e-15 86.3 115 49.6
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 2.4e-15 85.9 119 44.5
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 2.4e-15 85.9 113 49.6
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 3.2e-15 85.5 113 46.9
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 3.2e-15 85.5 118 45.8
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 3.2e-15 85.5 118 45.8
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 9.2e-15 84.0 115 47.8
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 9.2e-15 84.0 108 47.2
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.2e-14 83.6 110 46.4
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.2e-14 83.6 113 46.9
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.2e-14 83.6 133 42.1
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 1.2e-14 83.6 117 46.2
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.6e-14 83.2 111 45.9
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.6e-14 83.2 108 47.2
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 2.1e-14 82.8 130 40.8
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 2.1e-14 82.8 121 43.8
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 2.7e-14 82.4 112 46.4
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 3.5e-14 82.0 111 43.2
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 4.6e-14 81.6 118 46.6
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 4.6e-14 81.6 122 43.4
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 6.0e-14 81.3 112 46.4
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 7.8e-14 80.9 122 46.7
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.8e-14 80.9 105 47.6
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 1.0e-13 80.5 108 46.3
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 1.0e-13 80.5 121 46.3
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 2.3e-13 79.3 120 44.2
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 2.3e-13 79.3 120 45.0
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.3e-13 79.3 111 42.3
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 3.0e-13 79.0 115 45.2
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 3.9e-13 78.6 113 47.8
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 5.1e-13 78.2 109 44.0
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 6.6e-13 77.8 118 44.9
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 8.6e-13 77.4 123 43.1
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 8.6e-13 77.4 123 43.1
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 8.6e-13 77.4 132 40.9
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 1.1e-12 77.0 115 43.5
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 1.1e-12 77.0 115 42.6
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 1.5e-12 76.6 116 44.8
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.5e-12 76.6 125 41.6
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 1.9e-12 76.3 114 42.1
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 1.9e-12 76.3 117 45.3
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 1.9e-12 76.3 129 40.3
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 3.3e-12 75.5 115 41.7
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 4.3e-12 75.1 118 41.5
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 9.5e-12 73.9 108 46.3
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 9.5e-12 73.9 108 46.3
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 9.5e-12 73.9 125 41.6
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.6e-11 73.2 127 37.0
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 2.1e-11 72.8 120 41.7
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 2.8e-11 72.4 108 45.4
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 2.8e-11 72.4 108 45.4
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 2.8e-11 72.4 108 45.4
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 3.6e-11 72.0 109 43.1
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 3.6e-11 72.0 117 42.7
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 3.6e-11 72.0 114 45.6
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.8e-10 69.7 120 40.8
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 2.3e-10 69.3 118 41.5
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 2.3e-10 69.3 88 51.1
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 3.1e-10 68.9 113 41.6
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.1e-10 68.9 120 41.7
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 4.0e-10 68.6 117 38.5
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 2.0e-09 66.2 114 44.7
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.6e-09 65.9 86 50.0
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 7.5e-09 64.3 115 41.7
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 7.5e-09 64.3 103 39.8
CsaV3_3G001020 Cucumis sativus L. HOM05D001798 ORTHO05D022392 1.3e-08 63.5 112 42.0
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.3e-08 63.5 96 47.9
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 2.2e-08 62.8 145 31.7
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 4.9e-08 61.6 136 37.5
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 6.4e-08 61.2 108 43.5
Haze_21743 Corylus avellana HOM05D001798 ORTHO05D005040 8.3e-08 60.8 106 42.5
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 8.3e-08 60.8 82 50.0
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.4e-07 60.1 87 50.6
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 2.4e-07 59.3 71 45.1
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 2.4e-07 59.3 71 45.1
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.4e-07 59.3 68 51.5
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 2.4e-07 59.3 124 38.7
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 3.2e-07 58.9 117 37.6
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 3.2e-07 58.9 123 39.8
Cfa013272 Carpinus fangiana HOM05D001798 ORTHO05D005040 5.4e-07 58.2 98 42.9
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 5.4e-07 58.2 114 37.7
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 1.6e-06 56.6 96 38.5
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 2.1e-06 56.2 108 35.2
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 2.1e-06 56.2 89 39.3
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 2.7e-06 55.8 116 36.2
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 2.7e-06 55.8 119 33.6
Atru.chr7.2644 Acer truncatum HOM05D001798 ORTHO05D005040 3.5e-06 55.5 147 36.1


User provided reference genes

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