Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013269 Carpinus fangiana HOM05D014278 ORTHO05D009846 8.4e-188 660.6 439 100.0
Haze_21737 Corylus avellana HOM05D014278 ORTHO05D009846 1.0e-121 441.0 485 69.1
CiPaw.07G212500 Carya illinoinensis HOM05D013263 ORTHO05D009846 7.1e-54 215.7 484 41.5
QL12p025151 Quercus lobata HOM05D013263 ORTHO05D009846 1.9e-43 181.0 487 41.7
Potri.006G274600 Populus trichocarpa HOM05D014278 ORTHO05D009846 6.5e-23 112.8 468 32.7
Prupe.1G460100 Prunus persica HOM05D013263 ORTHO05D009846 2.5e-22 110.9 485 39.6
Potri.018G005500 Populus trichocarpa HOM05D014278 ORTHO05D009846 6.1e-21 106.3 483 34.6
Duzib168G1354 Durio zibethinus HOM05D019025 ORTHO05D009846 1.4e-20 105.1 484 31.2
MD15G1107800 Malus domestica HOM05D013263 ORTHO05D009846 8.8e-20 102.4 475 34.1
Sabra18G0011200 Salix brachista HOM05D014278 ORTHO05D009846 2.0e-19 101.3 465 33.3
Sabra18G0013600 Salix brachista HOM05D014278 ORTHO05D009846 3.3e-19 100.5 465 33.3
Manes.16G135600 Manihot esculenta HOM05D014278 ORTHO05D009846 1.3e-18 98.6 459 37.7
MD08G1128300 Malus domestica HOM05D013263 ORTHO05D009846 2.8e-18 97.4 477 36.5
Rhsim07G0169800 Rhododendron simsii HOM05D033576 ORTHO05D009846 1.1e-17 95.5 452 30.1
Duzib187G1602 Durio zibethinus HOM05D019025 ORTHO05D009846 1.2e-16 92.0 463 31.5
TWI34G1417 Tripterygium wilfordii HOM05D014278 ORTHO05D009846 2.9e-15 87.4 429 31.0
Ciclev10010613m.g Citrus clementina HOM05D014278 ORTHO05D009846 5.0e-15 86.7 500 29.4
MELO3C011188.2 Cucumis melo HOM05D019337 ORTHO05D009846 7.2e-14 82.8 509 31.8
Sed0008235 Sechium edule HOM05D019337 ORTHO05D009846 2.1e-13 81.3 468 33.5
ClCG08G012670 Citrullus lanatus HOM05D019337 ORTHO05D009846 3.0e-12 77.4 503 29.4
Lj1g0027444 Lotus japonicus HOM05D013197 ORTHO05D009846 1.1e-11 75.5 484 33.5
TWI32G0873 Tripterygium wilfordii HOM05D013263 ORTHO05D009846 1.5e-11 75.1 498 28.9
Aqoxy7G02994 Aquilegia oxysepala HOM05D021794 ORTHO05D009846 7.5e-11 72.8 470 30.6
PGR031G3799 Punica granatum HOM05D009522 ORTHO05D009846 7.5e-11 72.8 438 27.4
CsaV3_2G031380 Cucumis sativus L. HOM05D019337 ORTHO05D009846 1.3e-10 72.0 502 31.7
Cpa.g.sc23.16 Carica papaya HOM05D013263 ORTHO05D009846 1.1e-09 68.9 45 84.4
Glyma.14G134700 Glycine max HOM05D016469 ORTHO05D012811 1.4e-09 68.6 474 27.8
ECA240G3142 Erigeron canadensis HOM05D009522 ORTHO05D009846 3.1e-09 67.4 53 69.8
Atru.chr7.2642 Acer truncatum HOM05D019337 ORTHO05D009846 5.3e-09 66.6 489 31.3
COL.COLO4_19033 Corchorus olitorius HOM05D019025 ORTHO05D009846 1.6e-08 65.1 461 36.2
Ca_15666_v3 Cicer arietinum L. HOM05D013197 ORTHO05D009846 1.0e-07 62.4 42 73.8
Dinv21138 Davidia involucrata HOM05D003021 ORTHO05D009846 1.0e-07 62.4 48 75.0
Lj8P444T9 Lonicera japonica HOM05D009522 ORTHO05D009846 1.3e-07 62.0 41 78.0
PGSC0003DMG400029280 Solanum tuberosum HOM05D009522 ORTHO05D009846 3.8e-07 60.5 462 26.0
THA.LOC104803324 Tarenaya hassleriana HOM05D008799 ORTHO05D010975 5.0e-07 60.1 413 27.4
AUR62042563 Chenopodium quinoa HOM05D003021 ORTHO05D002235 6.5e-07 59.7 48 66.7
DCAR_011056 Daucus carota HOM05D003021 ORTHO05D002235 8.5e-07 59.3 44 72.7
Lj8P473T2 Lonicera japonica HOM05D031498 ORTHO05D016335 8.5e-07 59.3 41 75.6
Gohir.D04G045100 Gossypium hirsutum HOM05D003021 ORTHO05D002235 1.1e-06 58.9 45 71.1
Gorai.012G050300 Gossypium raimondii HOM05D003021 ORTHO05D002235 1.1e-06 58.9 45 71.1
Lalb_Chr23g0269121 Lupinus albus HOM05D013197 ORTHO05D012811 1.1e-06 58.9 498 28.5
Medtr3g108830 Medicago truncatula HOM05D013197 ORTHO05D009846 1.1e-06 58.9 43 74.4
RcHm_v2.0_Chr6g0304991 Rosa chinensis HOM05D013263 ORTHO05D009846 1.1e-06 58.9 482 28.4
Thecc.09G007200 Theobroma cacao HOM05D019025 ORTHO05D009846 1.1e-06 58.9 462 29.9
AUR62018150 Chenopodium quinoa HOM05D003021 ORTHO05D002235 1.5e-06 58.5 37 81.1
Dinv11486 Davidia involucrata HOM05D003021 ORTHO05D002235 1.5e-06 58.5 50 66.0
Lalb_Chr22g0361231 Lupinus albus HOM05D041085 ORTHO05D012811 1.5e-06 58.5 47 68.1
SalBow1G6367 Salvia bowleyana HOM05D003021 ORTHO05D002235 1.5e-06 58.5 46 69.6
CSS0009627 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 1.9e-06 58.2 50 64.0
CSS0042635 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 1.9e-06 58.2 50 64.0
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 1.9e-06 58.2 50 64.0
HanXRQChr03g0082551 Helianthus annuus HOM05D014278 ORTHO05D009846 1.9e-06 58.2 52 65.4
Manes.01G099000 Manihot esculenta HOM05D003021 ORTHO05D002235 1.9e-06 58.2 46 69.6
Rhsim08G0073600 Rhododendron simsii HOM05D003021 ORTHO05D002235 1.9e-06 58.2 50 64.0
Ciclev10011360m.g Citrus clementina HOM05D003021 ORTHO05D002235 2.5e-06 57.8 50 64.0
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 2.5e-06 57.8 44 70.5
Peaxi162Scf00288g00084 Petunia axillaris HOM05D009522 ORTHO05D009846 2.5e-06 57.8 450 30.9
Atru.chr8.382 Acer truncatum HOM05D003021 ORTHO05D002235 3.2e-06 57.4 50 64.0
QL02p039488 Quercus lobata HOM05D003021 ORTHO05D002235 3.2e-06 57.4 45 68.9
TAR629G0828 Trochodendron aralioides HOM05D003021 ORTHO05D002235 3.2e-06 57.4 44 70.5
ClCG11G004640 Citrullus lanatus HOM05D003021 ORTHO05D002235 4.2e-06 57.0 45 68.9
MELO3C022022.2 Cucumis melo HOM05D003021 ORTHO05D002235 4.2e-06 57.0 45 68.9
CsaV3_5G038410 Cucumis sativus L. HOM05D003021 ORTHO05D002235 4.2e-06 57.0 45 68.9
Migut.E01423 Erythranthe guttata HOM05D009522 ORTHO05D009846 4.2e-06 57.0 48 60.4
Lj9P468T32 Lonicera japonica HOM05D003021 ORTHO05D002235 4.2e-06 57.0 42 73.8
Nitab4.5_0000212g0140 Nicotiana tabacum HOM05D003021 ORTHO05D002235 4.2e-06 57.0 49 61.2
Peaxi162Scf00045g01739 Petunia axillaris HOM05D017514 ORTHO05D009846 4.2e-06 57.0 37 81.1
Sed0005734 Sechium edule HOM05D003021 ORTHO05D002235 4.2e-06 57.0 45 68.9
CAN.G908.7 Capsicum annuum HOM05D009522 ORTHO05D009846 5.5e-06 56.6 453 26.3
Oeu062145.1 Olea europaea HOM05D003021 ORTHO05D002235 5.5e-06 56.6 39 76.9
PSO013G0053 Papaver somniferum HOM05D003021 ORTHO05D002235 5.5e-06 56.6 43 72.1
PSO063G0327 Papaver somniferum HOM05D003021 ORTHO05D002235 5.5e-06 56.6 43 72.1
CSS0009655 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 7.2e-06 56.2 50 60.0
Cpa.g.sc14.145 Carica papaya HOM05D003021 ORTHO05D002235 7.2e-06 56.2 44 70.5
Migut.K01293 Erythranthe guttata HOM05D003021 ORTHO05D002235 7.2e-06 56.2 53 66.0
Gohir.A05G064300 Gossypium hirsutum HOM05D019025 ORTHO05D009846 7.2e-06 56.2 537 28.5
Gohir.A05G370400 Gossypium hirsutum HOM05D003021 ORTHO05D002235 7.2e-06 56.2 45 68.9
Nn3g17378 Nelumbo nucifera HOM05D003021 ORTHO05D002235 7.2e-06 56.2 50 62.0
Potri.017G090200 Populus trichocarpa HOM05D003021 ORTHO05D002235 7.2e-06 56.2 39 76.9
TAR371G0449 Trochodendron aralioides HOM05D003021 ORTHO05D002235 7.2e-06 56.2 51 60.8
Ah.10g031940 Amaranthus hybridus HOM05D003021 ORTHO05D002235 9.4e-06 55.8 45 68.9
CANSAT64G0795 Cannabis sativa HOM05D003021 ORTHO05D002235 9.4e-06 55.8 48 68.8
Duzib147G0806 Durio zibethinus HOM05D003021 ORTHO05D002235 9.4e-06 55.8 50 62.0
HanXRQChr15g0488721 Helianthus annuus HOM05D003021 ORTHO05D002235 9.4e-06 55.8 42 73.8
THA.LOC104805496 Tarenaya hassleriana HOM05D003021 ORTHO05D002235 9.4e-06 55.8 42 69.0
TPR.G1990 Trifolium pratense HOM05D014856 ORTHO05D002235 9.4e-06 55.8 41 73.2
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 9.4e-06 55.8 45 66.7


User provided reference genes

Program Settings