Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 4.3e-303 1043.9 537 100.0
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 6.5e-251 870.5 625 76.0
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 2.7e-172 609.4 525 65.1
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 6.9e-160 568.2 519 63.2
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 1.4e-123 447.6 526 51.7
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 1.7e-110 404.1 570 45.8
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 4.3e-109 399.4 506 48.6
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 9.5e-109 398.3 537 48.6
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 2.2e-105 387.1 461 50.3
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.1e-96 358.2 505 46.1
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.9e-96 357.5 507 46.5
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.7e-95 353.6 509 46.0
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 6.0e-95 352.4 522 43.3
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 1.1e-93 348.2 448 50.4
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 2.5e-93 347.1 541 43.4
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 3.4e-90 336.7 544 42.3
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 7.5e-90 335.5 525 42.5
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 6.4e-89 332.4 608 41.6
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 8.3e-89 332.0 554 44.2
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 1.4e-88 331.3 553 42.7
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 9.2e-88 328.6 517 44.1
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.5e-85 321.2 525 43.8
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.5e-85 321.2 525 43.8
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 5.6e-85 319.3 555 41.4
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.6e-84 317.8 521 42.2
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 2.6e-82 310.5 570 39.1
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 9.9e-82 308.5 522 42.5
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 1.7e-81 307.8 526 43.0
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 1.1e-80 305.1 375 49.3
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 1.4e-80 304.7 525 43.2
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.9e-80 304.3 522 41.4
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 3.2e-80 303.5 522 41.2
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 7.1e-80 302.4 493 43.2
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 7.8e-79 298.9 524 41.8
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 5.6e-77 292.7 529 42.0
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 1.6e-76 291.2 529 41.0
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 3.6e-76 290.0 526 41.8
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 1.2e-74 285.0 500 42.4
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 2.6e-74 283.9 522 40.6
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 7.6e-74 282.3 528 40.3
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 9.9e-74 282.0 526 42.0
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 2.4e-72 277.3 524 39.5
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 4.2e-72 276.6 540 39.3
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 4.6e-71 273.1 517 39.5
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 7.8e-71 272.3 504 41.7
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 3.9e-70 270.0 528 39.2
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 1.5e-69 268.1 538 40.1
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 8.1e-68 262.3 552 38.6
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 2.4e-67 260.8 552 38.0
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 1.3e-65 255.0 619 35.4
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 3.8e-65 253.4 543 37.2
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.5e-61 241.5 565 36.8
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 2.5e-61 240.7 524 37.2
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 9.6e-61 238.8 511 37.4
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 1.1e-59 235.3 271 50.6
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 1.4e-59 235.0 527 36.8
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 6.9e-59 232.6 557 34.8
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 1.5e-58 231.5 514 36.6
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 1.2e-55 221.9 525 35.0
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 2.1e-55 221.1 530 35.7
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 4.6e-55 219.9 524 35.9
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 6.9e-51 206.1 611 32.6
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 5.8e-50 203.0 525 34.3
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 3.2e-48 197.2 525 33.9
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 3.5e-47 193.7 526 34.4
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 2.3e-46 191.0 530 33.2
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 1.5e-45 188.3 326 41.7
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 1.6e-44 184.9 187 53.5
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 2.8e-44 184.1 533 32.5
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 6.3e-44 183.0 490 35.3
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 6.3e-44 183.0 519 33.3
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 3.1e-43 180.6 495 33.1
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 7.6e-42 176.0 446 34.1
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 2.9e-41 174.1 316 41.5
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 2.9e-41 174.1 487 33.9
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 1.1e-40 172.2 510 32.4
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 1.1e-40 172.2 532 32.5
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 1.9e-40 171.4 502 33.5
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 1.9e-40 171.4 502 33.5
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 3.2e-40 170.6 514 33.5
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 7.2e-40 169.5 491 32.6
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 1.2e-39 168.7 504 32.5
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 2.7e-39 167.5 174 51.7
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 2.7e-39 167.5 495 33.1
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 4.6e-39 166.8 272 42.3
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 1.0e-38 165.6 527 32.3
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 1.0e-38 165.6 514 32.9
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 1.3e-38 165.2 501 32.9
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 2.3e-38 164.5 512 31.6
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 6.7e-38 162.9 405 36.8
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 6.7e-38 162.9 502 31.1
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 6.7e-38 162.9 494 33.8
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 1.5e-37 161.8 512 34.0
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.9e-37 161.4 495 31.3
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 2.5e-37 161.0 511 33.5
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 3.3e-37 160.6 531 32.4
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 3.3e-37 160.6 201 46.8
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 4.3e-37 160.2 470 34.3
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 7.4e-37 159.5 391 33.5
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 2.8e-36 157.5 512 33.8
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 2.8e-36 157.5 512 33.8
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 1.4e-35 155.2 509 31.4
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 3.1e-35 154.1 208 46.6
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 5.3e-35 153.3 236 43.2
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 9.1e-35 152.5 517 30.0
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 2.6e-34 151.0 372 33.9
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 7.7e-34 149.4 210 48.6
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 9.4e-32 142.5 418 30.4
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 2.7e-31 141.0 240 40.0
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 1.5e-29 135.2 237 40.1
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 2.6e-29 134.4 473 31.7
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 6.3e-28 129.8 191 41.9
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 4.1e-27 127.1 201 42.8
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 1.2e-26 125.6 507 29.4
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 1.0e-25 122.5 224 35.7
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 5.0e-25 120.2 578 28.5
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 2.1e-23 114.8 253 34.8
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 1.7e-20 105.1 274 33.2
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 3.7e-20 104.0 167 37.1
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 1.8e-19 101.7 304 30.6
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 7.7e-18 96.3 175 34.9
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 2.5e-16 91.3 169 35.5
Cpa.g.sc23.6 Carica papaya HOM05D005642 ORTHO05D006672 1.8e-14 85.1 162 38.3
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 1.8e-14 85.1 160 39.4
Lj7A752T55 Lonicera japonica HOM05D005642 ORTHO05D006672 2.2e-12 78.2 335 29.9
arahy.Tifrunner.gnm1.ann1.T032QQ Arachis hypogaea HOM05D005642 ORTHO05D010845 8.2e-12 76.3 89 48.3
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 2.4e-11 74.7 285 29.8
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 2.4e-11 74.7 365 26.8
HPP92_018374 Vanilla planifolia HOM05D005642 ORTHO05D006672 3.1e-11 74.3 226 30.5
Rhsim09G0062600 Rhododendron simsii HOM05D005642 ORTHO05D006672 3.8e-09 67.4 136 41.9
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 5.5e-08 63.5 85 44.7
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 4.7e-07 60.5 51 62.7
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 4.7e-07 60.5 147 35.4
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 8.0e-07 59.7 284 26.4
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 8.0e-07 59.7 100 40.0
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 2.3e-06 58.2 98 37.8


User provided reference genes

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