Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013252 Carpinus fangiana HOM05D007029 ORTHO05D008258 1.6e-118 429.5 219 100.0
CiPaw.07G214600 Carya illinoinensis HOM05D007029 ORTHO05D008258 2.9e-80 302.4 188 81.9
MELO3C003643.2 Cucumis melo HOM05D007029 ORTHO05D008258 5.1e-77 291.6 175 80.0
Duzib168G0066 Durio zibethinus HOM05D007029 ORTHO05D008258 1.5e-76 290.0 166 84.9
Lalb_Chr24g0402421 Lupinus albus HOM05D007029 ORTHO05D008258 7.4e-76 287.7 172 82.0
Potri.006G278500 Populus trichocarpa HOM05D007029 ORTHO05D008258 7.4e-76 287.7 192 77.1
Sabra06G0216100 Salix brachista HOM05D007029 ORTHO05D008258 7.4e-76 287.7 191 76.4
Glyma.14G132800 Glycine max HOM05D007029 ORTHO05D008258 4.8e-75 285.0 173 83.2
Phvul.001G057900 Phaseolus vulgaris HOM05D007029 ORTHO05D008258 8.1e-75 284.3 167 84.4
Psat6g031920 Pisum sativum HOM05D007029 ORTHO05D008258 8.1e-75 284.3 186 75.8
Thecc.09G005000 Theobroma cacao HOM05D007029 ORTHO05D008258 2.4e-74 282.7 190 74.7
TPR.G12034 Trifolium pratense HOM05D007029 ORTHO05D008258 4.0e-74 282.0 185 75.7
Cpa.g.sc10.205 Carica papaya HOM05D007029 ORTHO05D008258 6.9e-74 281.2 211 69.7
Manes.03G086800 Manihot esculenta HOM05D007029 ORTHO05D008258 1.2e-73 280.4 177 77.4
Lj5g0005194 Lotus japonicus HOM05D007029 ORTHO05D008258 2.6e-73 279.3 192 73.4
Sed0023533 Sechium edule HOM05D007029 ORTHO05D008258 3.4e-73 278.9 168 79.2
QL12p024672 Quercus lobata HOM05D007029 ORTHO05D008258 9.9e-73 277.3 160 86.2
MD15G1110100 Malus domestica HOM05D007029 ORTHO05D008258 8.4e-72 274.2 190 71.6
CsaV3_3G046940 Cucumis sativus L. HOM05D007029 ORTHO05D008258 1.1e-71 273.9 195 70.8
Gorai.010G123900 Gossypium raimondii HOM05D007029 ORTHO05D008258 2.7e-70 269.2 193 70.5
RcHm_v2.0_Chr6g0312221 Rosa chinensis HOM05D007029 ORTHO05D008258 2.7e-70 269.2 166 77.7
CSS0017002 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 4.6e-70 268.5 167 77.8
CSS0043998 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 4.6e-70 268.5 167 77.8
Lj7A749T66 Lonicera japonica HOM05D007029 ORTHO05D008258 4.6e-70 268.5 173 76.3
Prupe.1G462300 Prunus persica HOM05D007029 ORTHO05D008258 6.0e-70 268.1 166 77.7
Ca_12881_v3 Cicer arietinum L. HOM05D007029 ORTHO05D008258 1.0e-69 267.3 186 73.1
FAN20G2423 Fragaria x ananassa HOM05D007029 ORTHO05D008258 1.3e-69 266.9 188 70.7
CAN.G947.13 Capsicum annuum HOM05D007029 ORTHO05D008258 1.8e-69 266.5 190 69.5
FvH4_2g30670 Fragaria vesca HOM05D007029 ORTHO05D008258 2.3e-69 266.2 188 70.2
TAR626G0900 Trochodendron aralioides HOM05D007029 ORTHO05D008258 5.1e-69 265.0 168 78.0
Atru.chr7.2665 Acer truncatum HOM05D007029 ORTHO05D008258 6.7e-69 264.6 194 70.1
Eucgr.C03998 Eucalyptus grandis HOM05D007029 ORTHO05D008258 6.7e-69 264.6 178 72.5
FAN24G0248 Fragaria x ananassa HOM05D007029 ORTHO05D008258 1.9e-68 263.1 188 69.7
Nitab4.5_0001159g0100 Nicotiana tabacum HOM05D007029 ORTHO05D008258 1.9e-68 263.1 190 68.9
Haze_08560 Corylus avellana HOM05D007029 ORTHO05D008258 3.3e-68 262.3 194 75.8
PGR044G0703 Punica granatum HOM05D007029 ORTHO05D008258 3.3e-68 262.3 190 67.9
GSVIVG01035546001 Vitis vinifera HOM05D007029 ORTHO05D008258 3.3e-68 262.3 165 77.0
Hund03277 Selenicereus undatus HOM05D007029 ORTHO05D008258 5.6e-68 261.5 170 72.4
Sopen12g032190 Solanum pennellii HOM05D007029 ORTHO05D008258 9.6e-68 260.8 190 67.9
Nitab4.5_0003963g0040 Nicotiana tabacum HOM05D007029 ORTHO05D008258 1.3e-67 260.4 190 68.4
Sc09g0007900 Simmondsia chinensis HOM05D007029 ORTHO05D008258 1.3e-67 260.4 190 70.5
Thhalv10014744m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 1.6e-67 260.0 194 67.5
Migut.A00446 Erythranthe guttata HOM05D007029 ORTHO05D008258 2.8e-67 259.2 167 72.5
Sc09g0007640 Simmondsia chinensis HOM05D007029 ORTHO05D008258 6.2e-67 258.1 190 70.0
Aqoxy7G02769 Aquilegia oxysepala HOM05D007029 ORTHO05D008258 1.4e-66 256.9 185 67.0
MSTRG.25772 Avicennia marina HOM05D007029 ORTHO05D008258 1.4e-66 256.9 182 69.2
BcaB08g37096 Brassica carinata HOM05D007029 ORTHO05D008258 1.4e-66 256.9 194 66.0
C09p66200 Brassica napus HOM05D007029 ORTHO05D008258 1.4e-66 256.9 177 69.5
BolC9t59441H Brassica oleracea HOM05D007029 ORTHO05D008258 2.4e-66 256.1 177 69.5
PSO144G0063 Papaver somniferum HOM05D007029 ORTHO05D008258 2.4e-66 256.1 170 71.8
AT5G10620 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 5.3e-66 255.0 166 74.1
AL6G21140 Arabidopsis lyrata HOM05D007029 ORTHO05D008258 6.9e-66 254.6 190 67.4
CARHR202690 Cardamine hirsuta HOM05D007029 ORTHO05D008258 6.9e-66 254.6 166 73.5
Sp6g32830 Schrenkiella parvula HOM05D007029 ORTHO05D008258 9.0e-66 254.2 213 63.4
BolC9t59447H Brassica oleracea HOM05D007029 ORTHO05D008258 1.2e-65 253.8 166 72.3
Nn8g40869 Nelumbo nucifera HOM05D007029 ORTHO05D008258 5.8e-65 251.5 188 65.4
Aa31LG3G16490 Aethionema arabicum HOM05D007029 ORTHO05D008258 1.3e-64 250.4 166 72.9
BraA10t44748Z Brassica rapa HOM05D007029 ORTHO05D008258 1.3e-64 250.4 165 71.5
ClCG05G017440 Citrullus lanatus HOM05D007029 ORTHO05D008258 1.7e-64 250.0 158 76.6
THA.LOC104799006 Tarenaya hassleriana HOM05D007029 ORTHO05D008258 1.7e-64 250.0 166 71.7
CANSAT25G3139 Cannabis sativa HOM05D007029 ORTHO05D008258 6.5e-64 248.1 158 75.9
EL10Ac2g03716 Beta vulgaris HOM05D007029 ORTHO05D008258 4.2e-63 245.4 154 75.3
ATR0626G398 Amborella trichopoda HOM05D007029 ORTHO05D008258 5.5e-63 245.0 172 67.4
Gohir.A06G106900 Gossypium hirsutum HOM05D007029 ORTHO05D008258 1.6e-62 243.4 174 69.5
SalBow4G2612 Salvia bowleyana HOM05D007029 ORTHO05D008258 1.6e-62 243.4 158 73.4
PGSC0003DMG400029282 Solanum tuberosum HOM05D007029 ORTHO05D008258 2.1e-62 243.0 180 67.8
A10p26970 Brassica napus HOM05D007029 ORTHO05D008258 6.7e-61 238.0 158 70.9
C09p66570 Brassica napus HOM05D007029 ORTHO05D008258 1.9e-60 236.5 158 72.2
C09p66410 Brassica napus HOM05D007029 ORTHO05D008258 2.5e-60 236.1 158 71.5
unitig_748.g7379 Utricularia gibba HOM05D007029 ORTHO05D008258 3.3e-60 235.7 162 70.4
Glyma.17G201400 Glycine max HOM05D007029 ORTHO05D008258 4.3e-60 235.3 138 84.8
TWI63G1096 Tripterygium wilfordii HOM05D007029 ORTHO05D008258 4.3e-60 235.3 177 65.0
Oeu059287.2 Olea europaea HOM05D007029 ORTHO05D008258 9.0e-58 227.6 153 71.2
arahy.Tifrunner.gnm1.ann1.MMLL3W Arachis hypogaea HOM05D007029 ORTHO05D008258 4.5e-57 225.3 165 70.3
Os04g0606900 Oryza sativa ssp. japonica HOM05D007029 ORTHO05D008258 5.9e-57 224.9 173 61.8
Cc06_g08830 Coffea canephora HOM05D007029 ORTHO05D008258 7.6e-57 224.6 168 64.3
HanXRQChr14g0454741 Helianthus annuus HOM05D007029 ORTHO05D008258 1.0e-56 224.2 193 57.5
Haze_21697 Corylus avellana HOM05D000022 ORTHO05D010831 1.7e-56 223.4 162 72.8
Zm00001eb071440 Zea mays HOM05D007029 ORTHO05D008258 3.8e-56 222.2 179 62.0
SGA_v2.0_scaffold27G11664 Striga asiatica HOM05D007029 ORTHO05D008258 1.0e-53 214.2 261 46.7
Carub.0006s0910 Capsella rubella HOM05D007029 ORTHO05D008258 2.3e-53 213.0 145 69.7
arahy.Tifrunner.gnm1.ann1.J6QZET Arachis hypogaea HOM05D007029 ORTHO05D008258 3.7e-51 205.7 156 68.6
Ciclev10009808m.g Citrus clementina HOM05D007029 ORTHO05D008258 1.2e-49 200.7 161 62.7
Mapoly0056s0124 Marchantia polymorpha HOM05D007029 ORTHO05D008258 5.9e-49 198.4 158 58.2
COL.COLO4_18612 Corchorus olitorius HOM05D007029 ORTHO05D008258 1.7e-48 196.8 119 77.3
Dinv09200 Davidia involucrata HOM05D007029 ORTHO05D008258 4.2e-47 192.2 141 70.2
Pp3c10_14520 Physcomitrium patens HOM05D007029 ORTHO05D008258 5.5e-47 191.8 158 55.1
MBI13_g31530_MAGBIO Magnolia biondii HOM05D007029 ORTHO05D008258 1.4e-45 187.2 192 54.2
CBR_g21129 Chara braunii HOM05D007029 ORTHO05D008258 3.9e-45 185.7 158 57.0
AagrBONN_evm.TU.Sc2ySwM_368.1595 Anthoceros agrestis HOM05D007029 ORTHO05D008258 9.7e-44 181.0 184 48.4
Oeu038914.4 Olea europaea HOM05D000263 ORTHO05D008258 1.3e-43 180.6 123 69.9
Actinidia22252 Actinidia chinensis HOM05D007029 ORTHO05D008258 1.7e-43 180.3 123 70.7
SMO145G0271 Selaginella moellendorffii HOM05D007029 ORTHO05D008258 4.1e-42 175.6 158 51.9
VMungo0647G0111 Vigna mungo HOM05D007029 ORTHO05D008258 3.8e-40 169.1 112 77.7
SEGI_22347 Sequoiadendron giganteum HOM05D007029 ORTHO05D008258 3.2e-39 166.0 132 59.1
MCO07G593 Micromonas commoda HOM05D007029 ORTHO05D008258 5.5e-39 165.2 210 41.9
Medtr1g010000 Medicago truncatula HOM05D007029 ORTHO05D008258 1.6e-38 163.7 130 67.7
Lsat_1_v5_gn_2_109441 Lactuca sativa HOM05D007029 ORTHO05D008258 2.1e-38 163.3 149 55.0
Ah.10g033770 Amaranthus hybridus HOM05D007029 ORTHO05D008258 1.4e-37 160.6 107 68.2
Gohir.D06G109100 Gossypium hirsutum HOM05D007029 ORTHO05D008258 1.8e-37 160.2 104 76.0
AUR62020630 Chenopodium quinoa HOM05D007029 ORTHO05D008258 2.3e-37 159.8 105 69.5
AUR62038752 Chenopodium quinoa HOM05D007029 ORTHO05D008258 3.9e-37 159.1 105 69.5
Solyc12g096330.3 Solanum lycopersicum HOM05D007029 ORTHO05D008258 6.7e-37 158.3 97 75.3
CDE04G2652 Ceratophyllum demersum HOM05D000178 ORTHO05D000229 1.5e-36 157.1 109 68.8
Cre16.g680100 Chlamydomonas reinhardtii HOM05D007029 ORTHO05D008258 4.8e-35 152.1 185 45.4
C09p66490 Brassica napus HOM05D007029 ORTHO05D008258 2.6e-33 146.4 88 77.3
Peaxi162Scf00459g00835 Petunia axillaris HOM05D007029 ORTHO05D008258 2.6e-33 146.4 102 70.6
Oeu059279.1 Olea europaea HOM05D007029 ORTHO05D008258 4.5e-33 145.6 98 72.4
C09p66660 Brassica napus HOM05D007029 ORTHO05D008258 1.2e-30 137.5 97 68.0
Thhalv10000503m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 8.8e-29 131.3 131 57.3
Hma1.2p1_0443F.1_g154050 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 1.8e-26 123.6 75 81.3
PRCOL_00001289 Prasinoderma coloniale HOM05D007029 ORTHO05D008258 1.1e-23 114.4 138 43.5
Hma1.2p1_0443F.1_g154040 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 7.5e-20 101.7 68 69.1
ECA238G0229 Erigeron canadensis HOM05D007029 ORTHO05D008258 7.7e-17 91.7 75 56.0
COL.COLO4_02059 Corchorus olitorius HOM05D007029 ORTHO05D008258 1.0e-16 91.3 158 31.0
Hma1.2p1_0443F.1_g154060 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 3.6e-14 82.8 49 79.6
CDE07G1585 Ceratophyllum demersum HOM05D003168 ORTHO05D003590 1.6e-09 67.4 49 61.2
AT5G10605 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 1.6e-06 57.4 36 75.0


User provided reference genes

Program Settings