Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 4.1e-159 564.7 289 100.0
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 8.0e-147 523.9 288 93.8
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 9.0e-114 414.1 289 73.7
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 2.8e-107 392.5 315 67.0
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 1.7e-88 330.1 295 63.1
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 6.1e-86 321.6 240 75.0
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.4e-85 320.5 293 58.7
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 2.5e-84 316.2 291 59.8
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 9.7e-84 314.3 290 60.0
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.7e-83 313.5 292 58.9
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 6.3e-83 311.6 290 58.3
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.1e-82 310.8 306 57.2
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 2.4e-82 309.7 293 60.8
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 4.1e-82 308.9 292 59.2
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.4e-81 305.8 293 58.0
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 2.5e-79 299.7 306 56.5
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.2e-79 299.3 297 56.9
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 3.3e-76 289.3 280 56.4
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 7.4e-76 288.1 391 44.8
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 9.1e-74 281.2 308 52.6
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 4.2e-71 272.3 293 53.2
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.3e-69 266.5 293 53.2
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 3.9e-69 265.8 292 53.1
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 3.9e-69 265.8 300 53.3
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 6.7e-69 265.0 291 51.9
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.1e-68 264.2 271 55.4
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 1.5e-68 263.8 311 54.0
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 3.3e-68 262.7 271 55.0
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 2.2e-67 260.0 291 52.2
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 6.3e-67 258.5 282 51.8
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 4.1e-66 255.8 292 52.1
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 5.3e-66 255.4 273 52.0
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.3e-66 255.4 289 51.9
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.6e-65 253.8 292 52.1
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.6e-65 253.8 281 51.6
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 2.0e-65 253.4 266 54.9
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 2.0e-65 253.4 276 55.1
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 3.5e-65 252.7 292 52.4
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 3.5e-65 252.7 276 54.3
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 3.5e-65 252.7 276 55.1
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 7.7e-65 251.5 282 53.2
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 6.5e-64 248.4 383 42.3
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 6.5e-64 248.4 289 48.4
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 8.5e-64 248.1 285 53.0
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 8.5e-64 248.1 292 51.0
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 1.5e-63 247.3 283 51.6
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 9.4e-63 244.6 298 48.7
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 1.6e-62 243.8 368 43.8
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 2.1e-62 243.4 290 52.4
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 4.7e-62 242.3 318 48.7
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 4.7e-62 242.3 292 50.3
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 6.1e-62 241.9 292 47.9
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 1.0e-61 241.1 272 51.1
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 4.0e-61 239.2 292 53.1
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.2e-61 238.8 283 49.1
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 5.2e-61 238.8 302 46.7
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 2.6e-60 236.5 292 48.3
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 3.4e-60 236.1 289 50.2
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.3e-59 234.2 274 50.4
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 3.7e-59 232.6 290 48.6
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 1.4e-58 230.7 393 40.7
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 1.4e-58 230.7 291 48.5
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 2.4e-58 229.9 328 46.3
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 2.4e-58 229.9 299 48.2
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 4.5e-57 225.7 290 47.2
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 4.5e-57 225.7 297 47.8
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 7.7e-57 224.9 317 44.5
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 1.7e-56 223.8 269 48.7
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 3.8e-56 222.6 339 43.4
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.1e-55 221.1 313 44.4
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.2e-55 219.2 280 47.9
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 4.2e-55 219.2 313 45.0
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 9.4e-55 218.0 372 40.3
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 1.2e-54 217.6 246 50.4
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 2.7e-54 216.5 278 47.1
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 4.7e-54 215.7 339 41.9
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.0e-53 214.5 324 44.4
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 2.3e-53 213.4 318 43.7
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 4.0e-53 212.6 284 45.4
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 8.8e-53 211.5 346 42.5
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.5e-52 210.7 354 41.2
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 9.8e-52 208.0 321 42.1
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 1.7e-51 207.2 349 41.0
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 2.8e-51 206.5 332 41.9
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 1.1e-50 204.5 336 41.4
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 1.8e-50 203.8 312 43.3
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 1.8e-50 203.8 318 44.7
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 7.0e-50 201.8 370 38.6
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.2e-49 201.1 282 46.5
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 1.6e-49 200.7 297 46.1
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.7e-49 199.9 289 44.3
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 2.7e-49 199.9 311 43.4
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 4.5e-49 199.1 320 42.5
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 7.7e-49 198.4 236 48.7
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 1.0e-48 198.0 290 43.1
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.3e-48 197.6 282 46.5
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 6.6e-48 195.3 171 56.7
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 8.6e-48 194.9 211 52.6
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 9.5e-47 191.4 181 60.2
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 9.5e-47 191.4 181 60.2
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 1.2e-46 191.0 284 40.5
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 2.1e-46 190.3 207 51.2
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.6e-46 189.5 178 58.4
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 4.0e-45 186.0 341 37.8
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 5.2e-45 185.7 395 35.4
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 7.5e-44 181.8 320 39.7
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 1.7e-43 180.6 170 58.8
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 2.2e-43 180.3 381 36.7
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 4.9e-43 179.1 291 40.2
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.4e-42 177.6 264 43.6
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.8e-42 177.2 182 54.4
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 4.1e-42 176.0 239 46.9
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 5.9e-41 172.2 234 45.7
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 5.9e-41 172.2 319 38.9
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 4.3e-39 166.0 266 42.5
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 2.8e-38 163.3 288 36.1
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 1.8e-37 160.6 270 42.6
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 1.8e-37 160.6 270 42.6
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 8.9e-37 158.3 264 40.9
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 1.2e-36 157.9 263 43.0
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.5e-36 157.5 261 42.9
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.5e-36 157.5 261 42.9
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 2.0e-36 157.1 276 40.9
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 5.8e-36 155.6 256 41.4
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 3.7e-35 152.9 264 42.8
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 6.4e-35 152.1 246 41.5
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 8.3e-35 151.8 239 43.9
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.1e-34 151.4 289 36.7
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 1.1e-34 151.4 184 50.0
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 9.2e-34 148.3 262 41.2
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 4.6e-33 146.0 169 50.3
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 1.0e-32 144.8 200 42.0
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.3e-32 143.7 118 61.0
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 3.0e-32 143.3 262 40.8
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 5.6e-31 139.0 152 49.3
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 9.5e-31 138.3 286 35.3
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 3.6e-30 136.3 230 42.6
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 3.6e-30 136.3 260 39.2
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 1.1e-29 134.8 221 43.4
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 1.4e-29 134.4 106 61.3
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 1.8e-29 134.0 219 45.2
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 3.1e-29 133.3 220 45.0
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 6.8e-29 132.1 338 30.5
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.9e-29 131.7 87 67.8
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 2.9e-27 126.7 268 34.0
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 4.9e-27 125.9 262 38.2
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 9.2e-26 121.7 257 36.2
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 7.3e-23 112.1 219 38.4
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 4.0e-21 106.3 220 37.3
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 1.7e-19 100.9 55 90.9
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 1.1e-18 98.2 277 29.6
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.0e-16 91.7 283 33.6
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 6.6e-16 89.0 152 39.5
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 6.6e-16 89.0 94 52.1
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 1.5e-15 87.8 157 42.0
arahy.Tifrunner.gnm1.ann1.ZI9W5R Arachis hypogaea HOM05D004296 ORTHO05D005045 1.2e-14 84.7 140 40.0
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 2.8e-14 83.6 152 41.4
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 8.9e-13 78.6 318 27.4
Cpa.g.sc39.98 Carica papaya HOM05D004296 ORTHO05D005045 4.9e-11 72.8 79 48.1
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 1.1e-10 71.6 84 44.0
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 3.2e-10 70.1 156 32.1
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 3.9e-08 63.2 120 33.3
Nitab4.5_0001315g0090 Nicotiana tabacum HOM05D004296 ORTHO05D005045 6.6e-08 62.4 90 45.6
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 2.5e-07 60.5 216 26.4
Sabra01G0079000 Salix brachista HOM05D004296 ORTHO05D005045 3.3e-07 60.1 88 40.9


User provided reference genes

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