Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013134 Carpinus fangiana HOM05D006421 ORTHO05D008268 8.3e-231 804.3 777 100.0
Haze_21503 Corylus avellana HOM05D006421 ORTHO05D008268 1.0e-196 691.0 778 82.3
CiPaw.07G224100 Carya illinoinensis HOM05D006421 ORTHO05D008268 1.1e-129 468.4 772 67.6
QL02p021457 Quercus lobata HOM05D006421 ORTHO05D008268 1.5e-126 458.0 775 74.1
Duzib168G2139 Durio zibethinus HOM05D006421 ORTHO05D008268 1.9e-118 431.0 773 66.5
TWI34G1016 Tripterygium wilfordii HOM05D006421 ORTHO05D008268 1.2e-115 421.8 779 60.6
FAN20G2434 Fragaria x ananassa HOM05D006421 ORTHO05D008268 1.1e-113 415.2 774 57.4
Gorai.001G034500 Gossypium raimondii HOM05D006421 ORTHO05D008268 1.4e-113 414.8 773 57.1
FAN24G1512 Fragaria x ananassa HOM05D006421 ORTHO05D008268 5.4e-113 412.9 777 63.1
FvH4_2g28941 Fragaria vesca HOM05D006421 ORTHO05D008268 1.1e-110 405.2 777 64.4
Gohir.A07G028900 Gossypium hirsutum HOM05D006421 ORTHO05D008268 2.8e-109 400.6 773 58.7
RcHm_v2.0_Chr6g0297771 Rosa chinensis HOM05D006421 ORTHO05D008268 8.0e-109 399.1 776 66.2
FAN27G1287 Fragaria x ananassa HOM05D006421 ORTHO05D008268 2.0e-107 394.4 774 57.6
Potri.006G255800 Populus trichocarpa HOM05D006421 ORTHO05D008268 2.6e-107 394.0 777 66.5
FAN15G0163 Fragaria x ananassa HOM05D006421 ORTHO05D008268 4.4e-107 393.3 775 57.8
Gohir.D07G032900 Gossypium hirsutum HOM05D006421 ORTHO05D008268 8.3e-106 389.0 773 58.2
Actinidia15670 Actinidia chinensis HOM05D006421 ORTHO05D008268 1.0e-103 382.1 773 51.9
Dinv08633 Davidia involucrata HOM05D006421 ORTHO05D008268 3.6e-101 373.6 733 67.3
Duzib187G1366 Durio zibethinus HOM05D006421 ORTHO05D008268 3.6e-101 373.6 774 58.8
Eucgr.C01728 Eucalyptus grandis HOM05D006421 ORTHO05D008268 4.7e-101 373.2 775 54.1
GSVIVG01035871001 Vitis vinifera HOM05D006421 ORTHO05D008268 4.4e-99 366.7 777 60.5
Manes.16G122900 Manihot esculenta HOM05D006421 ORTHO05D008268 6.6e-95 352.8 774 57.8
Prupe.1G482200 Prunus persica HOM05D006421 ORTHO05D008268 7.3e-94 349.4 776 54.5
Hma1.2p1_0243F.1_g100900 Hydrangea macrophylla HOM05D006421 ORTHO05D008268 1.1e-89 335.5 754 60.6
MD15G1126300 Malus domestica HOM05D006421 ORTHO05D008268 2.1e-88 331.3 774 54.5
COL.COLO4_18870 Corchorus olitorius HOM05D006421 ORTHO05D008268 1.3e-87 328.6 773 62.4
AUR62031532 Chenopodium quinoa HOM05D006421 ORTHO05D008268 2.4e-84 317.8 793 45.0
TAR625G1222 Trochodendron aralioides HOM05D006421 ORTHO05D008268 5.8e-83 313.2 782 59.1
Nn8g39522 Nelumbo nucifera HOM05D006421 ORTHO05D008268 2.9e-82 310.8 767 61.4
Hund04507 Selenicereus undatus HOM05D006421 ORTHO05D008268 4.9e-82 310.1 789 55.9
Thecc.09G023300 Theobroma cacao HOM05D006421 ORTHO05D008268 2.4e-81 307.8 686 64.6
Nitab4.5_0002408g0020 Nicotiana tabacum HOM05D006421 ORTHO05D008268 2.3e-79 301.2 761 62.0
Sabra06G0200100 Salix brachista HOM05D006421 ORTHO05D008268 3.9e-79 300.4 777 59.2
arahy.Tifrunner.gnm1.ann1.1F1BFK Arachis hypogaea HOM05D006421 ORTHO05D008268 1.6e-77 295.0 782 56.6
AT4G32190 Arabidopsis thaliana HOM05D006421 ORTHO05D008268 2.1e-77 294.7 777 48.9
EL10Ac2g04201 Beta vulgaris HOM05D006421 ORTHO05D008268 2.1e-77 294.7 782 52.9
Cc08_g00500 Coffea canephora HOM05D006421 ORTHO05D008268 5.3e-76 290.0 753 55.5
Sopen08g011590 Solanum pennellii HOM05D006421 ORTHO05D008268 2.2e-74 284.6 743 47.2
Oeu053117.1 Olea europaea HOM05D006421 ORTHO05D008268 3.8e-74 283.9 753 57.2
Thhalv10024464m.g Eutrema salsugineum HOM05D006421 ORTHO05D008268 1.4e-73 282.0 775 52.4
CAN.G117.5 Capsicum annuum HOM05D006421 ORTHO05D008268 1.9e-73 281.6 738 52.4
PGSC0003DMG400004306 Solanum tuberosum HOM05D006421 ORTHO05D008268 5.4e-73 280.0 773 52.8
Solyc08g022030.3 Solanum lycopersicum HOM05D006421 ORTHO05D008268 1.6e-72 278.5 773 45.7
Cpa.g.sc217.10 Carica papaya HOM05D006421 ORTHO05D008268 8.7e-71 272.7 773 62.1
arahy.Tifrunner.gnm1.ann1.658XMK Arachis hypogaea HOM05D006421 ORTHO05D008268 2.5e-70 271.2 782 55.6
Phvul.001G050600 Phaseolus vulgaris HOM05D006421 ORTHO05D008268 2.8e-69 267.7 778 61.3
Nitab4.5_0002042g0070 Nicotiana tabacum HOM05D006421 ORTHO05D008268 6.2e-69 266.5 761 59.8
Lj8P705T28 Lonicera japonica HOM05D006421 ORTHO05D008268 9.0e-68 262.7 725 50.3
AL7G19640 Arabidopsis lyrata HOM05D006421 ORTHO05D008268 1.5e-67 261.9 773 48.8
Medtr1g012620 Medicago truncatula HOM05D006421 ORTHO05D008268 1.7e-66 258.5 784 56.1
DCAR_001538 Daucus carota HOM05D006421 ORTHO05D008268 2.2e-66 258.1 771 46.2
PGR031G1896 Punica granatum HOM05D006421 ORTHO05D008268 1.4e-65 255.4 776 58.5
MSTRG.11610 Avicennia marina HOM05D006421 ORTHO05D008268 5.5e-65 253.4 779 51.9
Migut.A00033 Erythranthe guttata HOM05D006421 ORTHO05D008268 5.5e-65 253.4 773 52.3
Ciclev10007642m.g Citrus clementina HOM05D006421 ORTHO05D008268 7.1e-65 253.1 686 58.9
ClCG05G016810 Citrullus lanatus HOM05D006421 ORTHO05D008268 1.0e-63 249.2 793 59.6
AUR62012410 Chenopodium quinoa HOM05D006421 ORTHO05D008268 2.3e-63 248.1 773 49.3
Psat6g029040 Pisum sativum HOM05D006421 ORTHO05D008268 3.9e-63 247.3 784 53.4
SGA_v2.0_scaffold20G09108 Striga asiatica HOM05D002695 ORTHO05D002964 6.7e-63 246.5 762 53.8
Actinidia14601 Actinidia chinensis HOM05D006421 ORTHO05D008268 9.6e-62 242.7 773 56.3
Sp7g29980 Schrenkiella parvula HOM05D006421 ORTHO05D008268 9.6e-62 242.7 759 53.6
Rhsim07G0159500 Rhododendron simsii HOM05D006421 ORTHO05D008268 4.8e-61 240.4 753 50.2
CANSAT35G0532 Cannabis sativa HOM05D006421 ORTHO05D008268 9.0e-60 236.1 776 51.2
Sed0003255 Sechium edule HOM05D006421 ORTHO05D008268 3.4e-59 234.2 765 57.4
Lj5g0021919 Lotus japonicus HOM05D006421 ORTHO05D008268 4.5e-59 233.8 781 55.7
THA.LOC104818618 Tarenaya hassleriana HOM05D006421 ORTHO05D008268 4.5e-59 233.8 776 49.4
CARHR240120 Cardamine hirsuta HOM05D006421 ORTHO05D008268 7.6e-59 233.0 773 48.9
VMungo0647G1945 Vigna mungo HOM05D006421 ORTHO05D008268 1.7e-58 231.9 782 56.5
vmacro05173 Vaccinium macrocarpon HOM05D006421 ORTHO05D008268 1.1e-57 229.2 763 48.6
CSS0048874 Camellia sinensis var. sinensis HOM05D006421 ORTHO05D008268 1.4e-57 228.8 768 53.0
Carub.0007s0836 Capsella rubella HOM05D006421 ORTHO05D008268 1.9e-57 228.4 772 50.5
SalBow4G3177 Salvia bowleyana HOM05D006421 ORTHO05D008268 4.2e-57 227.3 755 49.5
TPR.G15679 Trifolium pratense HOM05D006421 ORTHO05D008268 1.2e-56 225.7 779 53.4
Lalb_Chr24g0402151 Lupinus albus HOM05D006421 ORTHO05D008268 2.7e-56 224.6 779 50.2
Atru.chr7.2443 Acer truncatum HOM05D006421 ORTHO05D008268 4.6e-56 223.8 736 58.2
MELO3C003706.2 Cucumis melo HOM05D006421 ORTHO05D008268 4.6e-56 223.8 777 50.6
HanXRQChr16g0510771 Helianthus annuus HOM05D006421 ORTHO05D008268 7.9e-56 223.0 732 53.6
CSS0036831 Camellia sinensis var. sinensis HOM05D006421 ORTHO05D008268 5.3e-52 210.3 770 52.9
BcaNung03144 Brassica carinata HOM05D006421 ORTHO05D008268 4.5e-51 207.2 772 49.5
CsaV3_3G046330 Cucumis sativus L. HOM05D006421 ORTHO05D008268 6.5e-50 203.4 783 54.0
Oeu033132.1 Olea europaea HOM05D006421 ORTHO05D008268 3.2e-49 201.1 752 50.8
Peaxi162Scf01131g00117 Petunia axillaris HOM05D006421 ORTHO05D008268 2.1e-48 198.4 731 53.9
ECA246G1400 Erigeron canadensis HOM05D002695 ORTHO05D002964 3.6e-48 197.6 753 51.1
PSO170G2190 Papaver somniferum HOM05D006421 ORTHO05D008268 1.8e-47 195.3 776 44.8
TAR636G3563 Trochodendron aralioides HOM05D006421 ORTHO05D008268 3.3e-46 191.0 483 51.1
A01p06150 Brassica napus HOM05D006421 ORTHO05D008268 2.2e-42 178.3 774 48.6
TAR636G0610 Trochodendron aralioides HOM05D006421 ORTHO05D008268 2.2e-42 178.3 163 66.3
Sc09g0008160 Simmondsia chinensis HOM05D006421 ORTHO05D008268 6.5e-42 176.8 508 51.2
PSO017G0123 Papaver somniferum HOM05D006421 ORTHO05D008268 9.4e-41 172.9 777 46.1
Ca_13033_v3 Cicer arietinum L. HOM05D006421 ORTHO05D008268 2.0e-38 165.2 781 46.7
C01p06780 Brassica napus HOM05D006421 ORTHO05D008268 1.3e-37 162.5 777 46.7
BolC1t00672H Brassica oleracea HOM05D006421 ORTHO05D008268 1.3e-37 162.5 777 46.7
C02p24100 Brassica napus HOM05D006421 ORTHO05D008268 3.1e-36 157.9 453 44.8
BcaC09g52004 Brassica carinata HOM05D006421 ORTHO05D008268 2.6e-35 154.8 774 46.6
BcaC03g14918 Brassica carinata HOM05D006421 ORTHO05D008268 6.5e-34 150.2 418 43.8
Aa31LG2G17740 Aethionema arabicum HOM05D006421 ORTHO05D008268 1.8e-31 142.1 778 48.2
Glyma.17G211900 Glycine max HOM05D006421 ORTHO05D008268 1.1e-30 139.4 322 66.1
BraA10t43273Z Brassica rapa HOM05D006421 ORTHO05D008268 1.1e-25 122.9 171 46.8
unitig_748.g8080 Utricularia gibba HOM05D006421 ORTHO05D008268 4.7e-24 117.5 714 51.0
FAN15G2294 Fragaria x ananassa HOM05D006421 ORTHO05D008268 3.3e-22 111.3 340 33.2
Glyma.14G115951 Glycine max HOM05D006421 ORTHO05D008268 1.8e-20 105.5 198 53.0
FAN15G3016 Fragaria x ananassa HOM05D006421 ORTHO05D008268 4.1e-20 104.4 248 57.7
ATR0800G069 Amborella trichopoda HOM05D006421 ORTHO05D008268 1.2e-19 102.8 136 52.2
C02p24000 Brassica napus HOM05D006421 ORTHO05D008268 1.3e-18 99.4 157 47.8
Glyma.14G115900 Glycine max HOM05D006421 ORTHO05D008268 3.0e-15 88.2 163 44.8
Zm00001eb206500 Zea mays HOM05D006421 ORTHO05D008268 7.5e-14 83.6 731 43.2
Sabra18G0028800 Salix brachista HOM05D006421 ORTHO05D008268 2.0e-11 75.5 86 61.6
Os02g0186400 Oryza sativa ssp. japonica HOM05D006421 ORTHO05D008268 3.5e-11 74.7 354 52.8
Lsat_1_v5_gn_5_30240 Lactuca sativa HOM05D006421 ORTHO05D008268 7.7e-11 73.6 764 37.6
SEGI_00734 Sequoiadendron giganteum HOM05D006421 ORTHO05D008268 2.9e-10 71.6 786 37.5
CDE07G0223 Ceratophyllum demersum HOM05D006421 ORTHO05D008268 7.2e-09 67.0 129 31.8
FAN15G3111 Fragaria x ananassa HOM05D006421 ORTHO05D008268 1.2e-08 66.2 79 55.7
Potri.018G026300 Populus trichocarpa HOM05D006421 ORTHO05D008268 1.4e-07 62.8 469 24.5
A03p32460 Brassica napus HOM05D003015 ORTHO05D024548 5.2e-07 60.8 104 44.2
BraA07t31256Z Brassica rapa HOM05D000793 ORTHO05D024548 8.8e-07 60.1 104 44.2
C02p24120 Brassica napus HOM05D006421 ORTHO05D039759 7.5e-06 57.0 86 45.3


User provided reference genes

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