Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 0.0e+00 1085.1 568 100.0
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 1.1e-288 996.1 596 89.9
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 1.1e-264 916.4 571 84.2
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 8.7e-262 906.7 566 83.0
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 5.1e-222 774.6 567 69.7
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 4.8e-220 768.1 571 70.6
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 1.2e-215 753.4 568 68.8
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 1.6e-215 753.1 567 68.1
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 2.6e-213 745.7 568 68.5
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 7.4e-213 744.2 569 68.5
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 1.5e-208 729.9 568 67.6
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 1.9e-208 729.6 565 67.1
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 3.2e-208 728.8 567 68.1
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 2.7e-207 725.7 565 67.1
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.4e-206 723.4 568 65.7
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 1.4e-206 723.4 573 67.0
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.4e-205 718.4 567 65.1
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 1.7e-204 716.5 568 65.0
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.2e-204 716.1 568 65.1
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 1.8e-203 713.0 568 64.8
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 2.0e-202 709.5 568 65.1
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 2.0e-202 709.5 569 65.4
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 1.3e-201 706.8 566 65.5
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 3.8e-201 705.3 567 64.6
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 1.1e-200 703.7 566 64.1
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 3.2e-200 702.2 567 63.8
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 4.2e-200 701.8 568 66.2
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 1.5e-197 693.3 570 65.3
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 5.7e-197 691.4 566 64.8
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 4.8e-196 688.3 518 68.5
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 5.4e-195 684.9 568 63.2
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 8.6e-193 677.6 569 62.4
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 1.5e-192 676.8 566 63.1
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 8.9e-190 667.5 567 62.3
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 8.9e-190 667.5 527 67.2
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 2.0e-189 666.4 573 60.7
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 3.4e-189 665.6 566 62.7
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 4.4e-189 665.2 555 62.9
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 4.4e-189 665.2 568 61.8
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 7.5e-189 664.5 557 63.0
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 1.7e-188 663.3 607 59.5
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 5.4e-187 658.3 566 61.7
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 2.0e-186 656.4 555 62.2
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 3.8e-185 652.1 557 62.1
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 5.0e-185 651.7 551 62.1
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 5.0e-185 651.7 558 62.5
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 6.6e-185 651.4 555 62.0
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 7.3e-184 647.9 558 62.5
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 9.5e-184 647.5 555 60.4
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 2.1e-183 646.4 560 61.6
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 2.1e-183 646.4 558 61.3
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 2.1e-183 646.4 560 61.6
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 2.8e-183 646.0 556 61.0
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 8.0e-183 644.4 558 60.8
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 1.0e-182 644.0 560 61.4
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 1.4e-182 643.7 570 59.5
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 1.8e-182 643.3 579 59.2
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.3e-182 642.9 528 63.1
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 8.9e-182 641.0 566 58.8
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 1.2e-181 640.6 560 60.7
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 4.9e-180 635.2 568 59.7
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 2.0e-178 629.8 569 58.2
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 3.5e-178 629.0 566 58.5
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 5.0e-177 625.2 544 61.4
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 8.6e-177 624.4 514 63.8
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 5.6e-176 621.7 571 58.0
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 2.1e-175 619.8 558 60.0
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 1.2e-173 614.0 563 58.8
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 5.8e-173 611.7 565 59.3
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 3.7e-172 609.0 604 56.5
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 7.0e-171 604.7 569 55.5
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 2.7e-170 602.8 574 57.0
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.5e-168 596.3 465 67.7
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 5.6e-168 595.1 552 58.0
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 9.5e-168 594.3 574 57.0
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 8.1e-167 591.3 568 58.1
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 8.1e-167 591.3 468 65.2
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 7.5e-165 584.7 567 54.0
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 1.9e-163 580.1 570 55.4
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.2e-162 577.4 531 56.7
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 7.8e-162 574.7 531 57.3
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 3.0e-161 572.8 475 64.6
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 1.2e-157 560.8 569 52.7
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 7.6e-157 558.1 455 64.4
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 9.9e-157 557.8 455 64.4
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 1.3e-156 557.4 566 51.9
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 2.1e-154 550.1 561 54.2
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 4.6e-154 548.9 609 51.2
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 1.5e-149 533.9 530 58.3
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 2.9e-148 529.6 571 51.5
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 2.3e-145 520.0 569 48.9
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 1.3e-140 504.2 566 49.3
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 1.1e-139 501.1 574 50.9
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 9.3e-139 498.0 392 63.3
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 5.1e-137 492.3 485 55.3
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.3e-135 487.6 384 66.4
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 8.1e-135 485.0 563 50.4
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 6.0e-122 442.2 596 43.1
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 1.0e-121 441.4 478 50.2
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 1.5e-91 341.3 304 58.6
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 2.0e-85 320.9 515 42.1
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 2.0e-85 320.9 515 42.1
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 1.2e-80 305.1 379 48.0
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 7.0e-78 295.8 568 30.6
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 2.5e-75 287.3 373 49.1
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 5.2e-73 279.6 560 35.2
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 2.2e-71 274.2 261 55.2
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 4.9e-71 273.1 579 31.6
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 4.9e-71 273.1 311 52.1
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 4.4e-64 250.0 552 30.4
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 4.3e-59 233.4 272 48.9
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 4.3e-59 233.4 272 48.9
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 6.8e-57 226.1 453 32.2
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 3.4e-40 170.6 163 55.2
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 4.9e-39 166.8 143 60.1
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 1.6e-37 161.8 150 54.7
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 7.8e-37 159.5 130 63.8
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 1.5e-35 155.2 170 48.8
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 2.5e-35 154.5 164 54.3
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 5.3e-33 146.7 164 52.4
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 5.3e-33 146.7 142 53.5
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.9e-30 138.3 222 38.3
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 9.3e-30 136.0 329 30.1
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 6.0e-29 133.3 134 52.2
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 5.1e-28 130.2 272 38.6
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 6.6e-28 129.8 242 43.0
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 8.7e-28 129.4 324 28.1
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 1.2e-24 119.0 137 52.6
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 7.6e-24 116.3 82 74.4
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 1.3e-23 115.5 120 54.2
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 8.4e-23 112.8 120 55.0
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 1.8e-20 105.1 122 47.5
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 2.9e-15 87.8 149 36.9
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 3.5e-13 80.9 88 55.7
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 6.7e-12 76.6 88 52.3
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 6.7e-12 76.6 69 50.7
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 1.5e-11 75.5 74 55.4
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 2.6e-08 64.7 44 68.2
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 2.6e-08 64.7 48 66.7
MELO3C032098.2 Cucumis melo HOM05D004744 ORTHO05D005655 7.6e-08 63.2 42 64.3
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 3.8e-07 60.8 70 48.6
Lsat_1_v5_gn_7_37280 Lactuca sativa HOM05D002279 ORTHO05D017063 5.0e-07 60.5 52 50.0
TWI34G1186 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 2.5e-06 58.2 36 69.4


User provided reference genes

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