Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013105 Carpinus fangiana HOM05D024967 ORTHO05D001268 9.9e-97 356.7 168 100.0
Haze_21462 Corylus avellana HOM05D024967 ORTHO05D001268 2.5e-76 288.9 167 83.8
Haze_21471 Corylus avellana HOM05D024967 ORTHO05D001268 3.4e-65 251.9 145 84.1
Cfa013103 Carpinus fangiana HOM05D024967 ORTHO05D001268 4.0e-37 158.7 112 70.5
Haze_21459 Corylus avellana HOM05D024967 ORTHO05D001268 1.8e-34 149.8 134 61.9
TAR626G1912 Trochodendron aralioides HOM05D001431 ORTHO05D001268 9.1e-26 120.9 140 50.7
Duzib168G0286 Durio zibethinus HOM05D001431 ORTHO05D001268 2.7e-25 119.4 138 46.4
FAN20G3221 Fragaria x ananassa HOM05D001431 ORTHO05D001268 1.0e-24 117.5 166 45.8
Duzib187G1968 Durio zibethinus HOM05D001431 ORTHO05D001268 1.7e-24 116.7 164 47.6
RcHm_v2.0_Chr6g0297221 Rosa chinensis HOM05D001431 ORTHO05D001268 1.2e-22 110.5 167 43.7
CiPaw.07G227000 Carya illinoinensis HOM05D001431 ORTHO05D001268 1.6e-22 110.2 135 48.9
FvH4_2g28310 Fragaria vesca HOM05D001431 ORTHO05D001268 8.0e-22 107.8 143 46.9
FAN27G3025 Fragaria x ananassa HOM05D001431 ORTHO05D001268 1.4e-21 107.1 166 43.4
Manes.16G126000 Manihot esculenta HOM05D001431 ORTHO05D001268 1.4e-21 107.1 137 48.2
COL.COLO4_18913 Corchorus olitorius HOM05D001431 ORTHO05D001268 3.4e-20 102.4 128 46.1
Sabra06G0202700 Salix brachista HOM05D001431 ORTHO05D001268 9.8e-20 100.9 152 44.7
TAR383G0017 Trochodendron aralioides HOM05D001431 ORTHO05D001268 9.8e-20 100.9 143 42.7
Potri.006G259300 Populus trichocarpa HOM05D001431 ORTHO05D001268 1.3e-19 100.5 150 45.3
Cpa.g.sc187.26 Carica papaya HOM05D001431 ORTHO05D001268 1.4e-18 97.1 116 50.9
Gohir.A06G099800 Gossypium hirsutum HOM05D001431 ORTHO05D001268 1.8e-18 96.7 165 44.2
Gohir.D06G102000 Gossypium hirsutum HOM05D001431 ORTHO05D001268 7.0e-18 94.7 165 43.6
Manes.03G011900 Manihot esculenta HOM05D001431 ORTHO05D001268 2.7e-17 92.8 137 46.7
Prupe.1G486100 Prunus persica HOM05D001431 ORTHO05D001268 3.5e-17 92.4 141 44.0
Manes.14G138600 Manihot esculenta HOM05D001431 ORTHO05D001268 5.9e-17 91.7 113 46.0
Gorai.010G117000 Gossypium raimondii HOM05D001431 ORTHO05D001268 2.9e-16 89.4 165 42.4
FAN24G3016 Fragaria x ananassa HOM05D001431 ORTHO05D001268 5.0e-16 88.6 166 39.8
Eucgr.C02729 Eucalyptus grandis HOM05D001431 ORTHO05D001268 2.5e-15 86.3 122 42.6
QL02p091314 Quercus lobata HOM05D001431 ORTHO05D001268 2.5e-15 86.3 137 44.5
MELO3C010262.2 Cucumis melo HOM05D001431 ORTHO05D001268 3.3e-15 85.9 133 42.1
Atru.chr7.2499 Acer truncatum HOM05D001431 ORTHO05D001268 7.3e-15 84.7 175 36.6
MD15G1130700 Malus domestica HOM05D001431 ORTHO05D001268 1.2e-14 84.0 143 43.4
CsaV3_1G028510 Cucumis sativus L. HOM05D001431 ORTHO05D001268 2.1e-14 83.2 133 40.6
Actinidia14101 Actinidia chinensis HOM05D001431 ORTHO05D001268 8.0e-14 81.3 121 41.3
Nn8g39717 Nelumbo nucifera HOM05D001431 ORTHO05D001268 8.0e-14 81.3 128 42.2
ClCG06G012050 Citrullus lanatus HOM05D001431 ORTHO05D001268 1.0e-13 80.9 133 39.8
Eucgr.C02728 Eucalyptus grandis HOM05D001431 ORTHO05D001268 1.4e-13 80.5 111 40.5
arahy.Tifrunner.gnm1.ann1.KMWM4V Arachis hypogaea HOM05D001431 ORTHO05D001268 6.8e-13 78.2 120 38.3
QL02p091271 Quercus lobata HOM05D001431 ORTHO05D001268 1.5e-12 77.0 150 38.0
TWI34G1362 Tripterygium wilfordii HOM05D001431 ORTHO05D001268 1.5e-12 77.0 151 38.4
Psat0ss25082g0080 Pisum sativum HOM05D001431 ORTHO05D001268 1.7e-11 73.6 148 37.8
Oeu042713.1 Olea europaea HOM05D001431 ORTHO05D001268 6.4e-11 71.6 145 35.9
Ciclev10010338m.g Citrus clementina HOM05D001431 ORTHO05D001268 8.3e-11 71.2 124 37.9
Hma1.2p1_0182F.1_g080500 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 8.3e-11 71.2 155 36.8
Thecc.09G141800 Theobroma cacao HOM05D001431 ORTHO05D001268 1.1e-10 70.9 136 38.2
Cfa020891 Carpinus fangiana HOM05D001431 ORTHO05D001268 1.8e-10 70.1 120 40.0
Duzib187G1758 Durio zibethinus HOM05D001431 ORTHO05D001268 2.4e-10 69.7 110 40.0
Medtr4g116530 Medicago truncatula HOM05D001431 ORTHO05D001268 3.2e-10 69.3 115 35.7
Glyma.17G105000 Glycine max HOM05D001431 ORTHO05D001268 5.4e-10 68.6 135 39.3
Lalb_Chr07g0179511 Lupinus albus HOM05D001431 ORTHO05D001268 5.4e-10 68.6 117 38.5
ClCG08G013540 Citrullus lanatus HOM05D001431 ORTHO05D001268 7.0e-10 68.2 123 33.3
Psat4g033120 Pisum sativum HOM05D001431 ORTHO05D001268 7.0e-10 68.2 115 36.5
MELO3C011280.2 Cucumis melo HOM05D001431 ORTHO05D001268 9.2e-10 67.8 126 38.1
Duzib168G0421 Durio zibethinus HOM05D001431 ORTHO05D001268 9.2e-10 67.8 141 36.2
Glyma.15G202100 Glycine max HOM05D001431 ORTHO05D001268 1.2e-09 67.4 120 36.7
Gohir.A06G050000 Gossypium hirsutum HOM05D001431 ORTHO05D001268 1.6e-09 67.0 113 40.7
MBI15_g10642_MAGBIO Magnolia biondii HOM05D001431 ORTHO05D001268 2.0e-09 66.6 122 39.3
PGR044G0236 Punica granatum HOM05D001431 ORTHO05D001268 2.0e-09 66.6 163 35.0
TPR.G22802 Trifolium pratense HOM05D001431 ORTHO05D001268 2.0e-09 66.6 126 38.9
EL10Ac8g18816 Beta vulgaris HOM05D001431 ORTHO05D001268 2.7e-09 66.2 133 36.1
CSS0009490 Camellia sinensis var. sinensis HOM05D001431 ORTHO05D001268 2.7e-09 66.2 112 39.3
Glyma.13G157400 Glycine max HOM05D001431 ORTHO05D001268 7.8e-09 64.7 134 38.1
CiPaw.15G181700 Carya illinoinensis HOM05D001431 ORTHO05D001268 1.0e-08 64.3 112 40.2
Gorai.010G056200 Gossypium raimondii HOM05D001431 ORTHO05D001268 1.7e-08 63.5 106 39.6
HanXRQChr03g0064021 Helianthus annuus HOM05D001431 ORTHO05D001268 1.7e-08 63.5 117 37.6
COL.COLO4_24101 Corchorus olitorius HOM05D001431 ORTHO05D001268 3.0e-08 62.8 169 32.0
Ca_27061_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 3.9e-08 62.4 149 34.9
Atru.chr7.261 Acer truncatum HOM05D001431 ORTHO05D001268 5.0e-08 62.0 113 37.2
Migut.K00377 Erythranthe guttata HOM05D001431 ORTHO05D001268 5.0e-08 62.0 112 35.7
Nitab4.5_0011752g0010 Nicotiana tabacum HOM05D001431 ORTHO05D001268 5.0e-08 62.0 120 37.5
Rhsim03G0254500 Rhododendron simsii HOM05D001431 ORTHO05D001268 5.0e-08 62.0 136 33.8
Ah.14g078760 Amaranthus hybridus HOM05D001431 ORTHO05D001268 8.6e-08 61.2 134 35.1
CSS0029436 Camellia sinensis var. sinensis HOM05D001431 ORTHO05D001268 8.6e-08 61.2 83 47.0
Ciclev10010491m.g Citrus clementina HOM05D001431 ORTHO05D001268 1.5e-07 60.5 142 35.9
Eucgr.C00435 Eucalyptus grandis HOM05D001431 ORTHO05D001268 1.5e-07 60.5 109 37.6
Glyma.04G064200 Glycine max HOM05D030354 ORTHO05D029741 1.5e-07 60.5 103 36.9
Peaxi162Scf00391g00002 Petunia axillaris HOM05D001431 ORTHO05D001268 1.5e-07 60.5 119 37.8
CsaV3_2G032300 Cucumis sativus L. HOM05D001431 ORTHO05D001268 1.9e-07 60.1 116 37.9
TPR.G15780 Trifolium pratense HOM05D001431 ORTHO05D001268 1.9e-07 60.1 110 37.3
Lsat_1_v5_gn_7_47921 Lactuca sativa HOM05D001431 ORTHO05D001268 2.5e-07 59.7 117 32.5
Potri.006G190100 Populus trichocarpa HOM05D001431 ORTHO05D001268 2.5e-07 59.7 115 33.0
Sabra18G0097100 Salix brachista HOM05D001431 ORTHO05D001268 3.3e-07 59.3 111 37.8
Migut.K00653 Erythranthe guttata HOM05D001431 ORTHO05D001268 4.3e-07 58.9 130 33.1
Glyma.09G095800 Glycine max HOM05D001431 ORTHO05D001268 4.3e-07 58.9 122 33.6
Potri.018G114200 Populus trichocarpa HOM05D001431 ORTHO05D001268 4.3e-07 58.9 134 35.1
PGR142G0349 Punica granatum HOM05D001431 ORTHO05D001268 5.6e-07 58.5 156 35.9
Phvul.009G209600 Phaseolus vulgaris HOM05D001431 ORTHO05D001268 7.3e-07 58.2 122 33.6
CSS0036833 Camellia sinensis var. sinensis HOM05D001431 ORTHO05D001268 9.5e-07 57.8 104 35.6
Medtr6g007727 Medicago truncatula HOM05D001431 ORTHO05D001268 9.5e-07 57.8 119 33.6
Sed0026439 Sechium edule HOM05D001431 ORTHO05D001268 1.2e-06 57.4 102 37.3
DCAR_020906 Daucus carota HOM05D001431 ORTHO05D001268 1.6e-06 57.0 119 30.3
Migut.K00665 Erythranthe guttata HOM05D001431 ORTHO05D001268 1.6e-06 57.0 130 33.8
Actinidia26350 Actinidia chinensis HOM05D000320 ORTHO05D000532 2.1e-06 56.6 69 47.8
AUR62011255 Chenopodium quinoa HOM05D001431 ORTHO05D001268 2.1e-06 56.6 108 37.0
Haze_19319 Corylus avellana HOM05D001431 ORTHO05D001268 2.1e-06 56.6 122 36.9
CANSAT11G0265 Cannabis sativa HOM05D001431 ORTHO05D001268 2.8e-06 56.2 67 49.3
CARHR188250 Cardamine hirsuta HOM05D001431 ORTHO05D001268 4.7e-06 55.5 108 37.0
HanXRQChr05g0137941 Helianthus annuus HOM05D001431 ORTHO05D001268 6.2e-06 55.1 146 34.2
Peaxi162Scf00108g00003 Petunia axillaris HOM05D001431 ORTHO05D001268 6.2e-06 55.1 122 32.0
Cc06_g07420 Coffea canephora HOM05D001431 ORTHO05D001268 8.0e-06 54.7 85 40.0
PSO063G3193 Papaver somniferum HOM05D001431 ORTHO05D001268 8.0e-06 54.7 101 36.6
PSO832G1465 Papaver somniferum HOM05D001431 ORTHO05D001268 8.0e-06 54.7 101 36.6
Phvul.003G174800 Phaseolus vulgaris HOM05D001431 ORTHO05D001268 8.0e-06 54.7 104 39.4


User provided reference genes

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