Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 1.8e-111 406.0 211 100.0
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 1.5e-105 386.3 211 96.2
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 8.9e-87 323.9 209 80.9
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 3.0e-82 308.9 209 77.0
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 8.6e-82 307.4 212 77.8
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 2.5e-81 305.8 209 77.0
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 2.1e-80 302.8 212 73.1
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 1.1e-79 300.4 209 72.2
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 1.4e-79 300.1 206 75.2
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.4e-79 300.1 212 72.2
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 6.8e-79 297.7 212 74.1
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 2.0e-78 296.2 212 72.2
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 9.9e-78 293.9 207 73.4
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 9.9e-78 293.9 208 74.5
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 2.9e-77 292.4 208 72.6
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 2.4e-76 289.3 208 72.1
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.2e-75 287.0 200 73.0
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.7e-75 285.8 208 72.1
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.7e-75 285.8 208 72.1
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 5.1e-74 281.6 200 72.0
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 8.7e-74 280.8 214 68.2
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.1e-73 280.4 210 68.6
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 2.8e-72 275.8 201 69.7
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 4.8e-72 275.0 201 71.6
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 4.8e-72 275.0 206 67.5
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 6.2e-72 274.6 205 69.3
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 6.2e-72 274.6 194 73.2
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 4.0e-71 271.9 200 70.0
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 2.6e-70 269.2 206 68.4
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 9.9e-70 267.3 211 67.3
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.8e-69 265.4 183 76.0
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.1e-68 263.8 208 66.8
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 1.1e-68 263.8 200 67.5
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.4e-68 263.5 208 66.8
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 2.4e-68 262.7 198 68.2
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 5.4e-68 261.5 209 66.0
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 1.2e-67 260.4 198 67.7
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.7e-67 259.2 208 69.7
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 4.6e-67 258.5 201 66.7
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 5.1e-66 255.0 199 64.8
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 3.3e-65 252.3 206 64.1
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 3.3e-65 252.3 201 64.7
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 5.6e-65 251.5 208 64.9
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 9.6e-65 250.8 204 63.7
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 9.6e-65 250.8 203 63.1
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 2.1e-64 249.6 208 60.1
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 2.8e-64 249.2 202 64.9
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 3.6e-64 248.8 206 64.1
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 3.6e-64 248.8 181 71.3
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 1.1e-63 247.3 206 62.6
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.1e-63 247.3 206 64.1
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 1.1e-63 247.3 197 65.0
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 1.4e-63 246.9 204 67.2
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.8e-63 246.5 209 65.6
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 4.0e-63 245.4 206 62.6
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 1.2e-62 243.8 191 64.4
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 2.0e-62 243.0 216 60.2
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 3.4e-62 242.3 200 63.0
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 4.5e-62 241.9 204 59.8
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 9.9e-62 240.7 205 61.5
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 1.7e-61 240.0 199 63.8
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 2.2e-61 239.6 206 59.7
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 2.2e-61 239.6 204 63.2
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 2.9e-61 239.2 198 66.2
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 2.9e-61 239.2 209 60.8
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 4.9e-61 238.4 204 59.8
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 8.4e-61 237.7 199 61.8
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 4.2e-60 235.3 202 59.9
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 9.3e-60 234.2 198 62.1
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 1.6e-59 233.4 207 59.4
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 3.5e-59 232.3 199 58.8
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 7.9e-59 231.1 203 58.1
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 1.0e-58 230.7 202 58.9
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 1.3e-58 230.3 205 56.6
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 1.8e-58 229.9 207 56.0
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 2.3e-58 229.6 201 60.2
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 2.3e-58 229.6 202 63.9
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 2.3e-58 229.6 206 58.7
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 5.1e-58 228.4 205 61.0
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 6.7e-58 228.0 213 56.8
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 8.7e-58 227.6 203 59.1
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.1e-57 227.3 203 58.6
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 3.3e-57 225.7 215 56.3
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 3.3e-57 225.7 215 56.3
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 2.1e-56 223.0 214 55.6
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 2.8e-56 222.6 198 56.6
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 1.1e-55 220.7 215 55.8
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.8e-55 219.9 202 59.9
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 2.4e-55 219.5 166 68.7
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 1.5e-54 216.9 203 60.6
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 1.3e-53 213.8 216 54.2
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 3.8e-53 212.2 199 56.8
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 6.5e-53 211.5 135 76.3
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 3.2e-52 209.1 211 54.5
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 5.5e-52 208.4 209 56.0
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 5.5e-52 208.4 209 56.0
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 9.3e-52 207.6 238 50.4
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 1.2e-51 207.2 238 50.0
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 1.2e-51 207.2 197 56.9
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.2e-51 207.2 197 55.3
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 1.6e-51 206.8 186 57.5
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 2.1e-51 206.5 198 52.5
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 2.1e-51 206.5 209 56.0
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 2.3e-50 203.0 209 55.0
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 3.0e-50 202.6 200 55.0
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 8.7e-50 201.1 207 54.6
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 5.7e-49 198.4 200 54.5
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 1.6e-48 196.8 137 70.8
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 8.2e-48 194.5 205 49.3
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 2.2e-45 186.4 200 51.5
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 9.3e-44 181.0 216 47.7
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 1.3e-42 177.2 209 48.8
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 9.7e-41 171.0 202 48.0
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 2.4e-39 166.4 203 51.2
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 6.9e-39 164.9 202 49.0
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 5.9e-38 161.8 124 67.7
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 1.4e-36 157.1 197 45.7
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 3.2e-36 156.0 201 45.3
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 9.4e-36 154.5 197 45.2
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 9.4e-36 154.5 197 45.2
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.2e-35 154.1 121 67.8
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 3.6e-35 152.5 207 43.5
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 1.0e-34 151.0 197 44.2
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 9.7e-33 144.4 203 42.9
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 4.8e-32 142.1 207 42.5
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 4.5e-30 135.6 197 42.1
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 2.9e-29 132.9 87 73.6
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 1.5e-25 120.6 177 39.0
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 1.5e-25 120.6 198 40.9
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 2.0e-25 120.2 189 40.7
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 1.5e-22 110.5 181 33.7
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 2.6e-22 109.8 184 38.0
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 3.2e-20 102.8 172 39.0
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 9.4e-20 101.3 185 35.7
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 1.2e-14 84.3 72 56.9
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 3.5e-14 82.8 95 41.1
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 7.7e-14 81.6 88 47.7
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 2.9e-13 79.7 74 59.5
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 8.5e-13 78.2 74 56.8
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 8.5e-13 78.2 74 56.8
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 7.2e-12 75.1 234 26.5
arahy.Tifrunner.gnm1.ann1.Y76JQK Arachis hypogaea HOM05D004800 ORTHO05D005842 2.1e-11 73.6 190 32.6
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 8.0e-11 71.6 61 65.6
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 3.0e-10 69.7 61 62.3
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 1.2e-09 67.8 152 29.6
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 1.5e-09 67.4 56 57.1
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 2.6e-09 66.6 136 39.7
TPR.G31499 Trifolium pratense HOM05D000201 ORTHO05D016113 7.0e-07 58.5 56 53.6


User provided reference genes

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