Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 0.0e+00 1309.7 693 100.0
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 0.0e+00 1146.7 712 85.0
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 0.0e+00 1146.3 693 86.4
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 0.0e+00 1134.4 693 85.3
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 7.1e-311 1070.1 689 79.8
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 8.3e-307 1056.6 693 78.5
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 2.9e-304 1048.1 693 76.9
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 1.5e-303 1045.8 693 76.8
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 4.2e-303 1044.3 694 78.0
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 1.8e-301 1038.9 690 78.1
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 2.6e-300 1035.0 692 77.3
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 1.3e-299 1032.7 695 77.0
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 2.7e-297 1025.0 695 76.8
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.0e-296 1023.1 686 76.7
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 8.6e-296 1020.0 688 77.2
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 1.1e-295 1019.6 693 76.2
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 3.3e-295 1018.1 696 75.9
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 9.5e-295 1016.5 698 75.5
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 2.1e-294 1015.4 696 76.1
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 6.1e-294 1013.8 698 76.4
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 8.0e-294 1013.4 693 74.5
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 1.0e-293 1013.1 696 76.0
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 1.8e-293 1012.3 693 74.3
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 5.2e-293 1010.7 688 76.0
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 1.2e-292 1009.6 688 76.5
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.2e-292 1009.6 693 74.6
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 1.5e-292 1009.2 693 75.6
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 3.7e-291 1004.6 695 75.7
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 6.4e-291 1003.8 698 75.5
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.9e-290 1002.3 693 73.7
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 1.9e-290 1002.3 719 73.6
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 3.2e-290 1001.5 693 74.0
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 1.2e-289 999.6 693 73.9
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 1.2e-289 999.6 690 75.4
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 3.5e-289 998.0 693 74.0
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 1.3e-288 996.1 693 75.0
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 3.9e-288 994.6 693 75.0
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 4.7e-286 987.6 690 75.1
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 2.3e-285 985.3 690 75.5
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 9.2e-282 973.4 693 73.2
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 2.3e-280 968.8 690 74.2
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 3.9e-280 968.0 693 71.9
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 3.9e-280 968.0 728 71.7
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 5.0e-280 967.6 693 72.4
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 5.0e-280 967.6 693 71.7
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 8.6e-280 966.8 693 72.6
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 2.0e-276 955.7 715 71.5
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 3.4e-276 954.9 646 75.5
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 1.3e-275 953.0 691 71.3
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 1.7e-275 952.6 688 73.3
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 6.4e-275 950.7 687 71.8
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 1.4e-274 949.5 687 71.8
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 2.4e-274 948.7 711 71.6
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 9.2e-274 946.8 681 71.2
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 1.2e-273 946.4 695 70.2
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 6.0e-273 944.1 707 70.6
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 6.0e-273 944.1 688 71.9
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 3.9e-272 941.4 686 72.4
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 6.6e-272 940.6 707 70.4
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 8.6e-272 940.3 693 71.1
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 1.5e-271 939.5 684 71.9
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 1.9e-271 939.1 692 70.5
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 3.3e-271 938.3 746 68.8
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 4.3e-271 937.9 690 71.6
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 5.6e-271 937.6 689 70.4
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 1.2e-270 936.4 689 71.7
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 2.4e-269 932.2 678 70.6
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 2.6e-268 928.7 689 71.1
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 7.6e-268 927.2 694 68.9
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 9.9e-268 926.8 693 68.3
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 3.8e-267 924.9 689 70.2
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 3.8e-267 924.9 663 73.0
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 1.9e-266 922.5 695 69.5
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 3.5e-265 918.3 690 70.6
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 2.3e-264 915.6 693 68.1
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 3.0e-264 915.2 693 69.6
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 3.9e-264 914.8 693 67.7
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 1.5e-263 912.9 712 67.3
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 1.5e-263 912.9 646 73.2
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 8.1e-262 907.1 797 62.0
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 1.1e-261 906.7 694 68.3
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 1.4e-261 906.4 691 67.4
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 1.8e-261 906.0 647 71.9
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.2e-260 903.3 681 67.7
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 3.4e-260 901.7 693 67.2
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 4.4e-260 901.4 693 67.7
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 2.7e-257 892.1 693 66.5
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 3.5e-257 891.7 688 67.0
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.7e-256 889.4 691 67.1
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 8.7e-256 887.1 693 66.8
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.5e-255 886.3 727 65.3
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 2.5e-255 885.6 694 67.9
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 5.6e-255 884.4 694 68.0
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 7.3e-255 884.0 693 66.1
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 1.3e-254 883.2 693 66.1
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 1.3e-254 883.2 671 68.1
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 1.4e-253 879.8 608 74.2
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 4.0e-253 878.2 691 67.0
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 5.8e-252 874.4 711 65.3
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 9.9e-252 873.6 693 67.8
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 1.7e-251 872.8 712 66.6
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 3.8e-251 871.7 668 68.7
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 6.4e-251 870.9 687 65.6
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 1.4e-250 869.8 645 68.8
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 2.7e-249 865.5 690 67.4
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 3.0e-248 862.1 800 60.0
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 8.7e-248 860.5 710 64.2
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 7.4e-247 857.4 710 63.2
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 2.1e-246 855.9 693 64.2
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 4.8e-246 854.7 626 70.8
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 6.2e-246 854.4 687 64.6
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 6.2e-246 854.4 640 67.0
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 3.4e-244 848.6 607 72.2
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 4.6e-241 838.2 655 66.0
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 4.6e-241 838.2 644 69.3
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 1.8e-240 836.3 688 62.2
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 8.7e-240 833.9 655 65.5
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 5.6e-239 831.2 654 65.0
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 2.8e-238 828.9 688 61.6
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 3.7e-238 828.6 687 62.3
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 6.2e-238 827.8 661 65.7
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.1e-237 827.0 696 65.8
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 1.3e-235 820.1 645 64.2
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 9.3e-234 813.9 663 64.1
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 9.3e-234 813.9 690 63.6
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 2.5e-231 805.8 663 64.0
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 2.5e-231 805.8 663 64.0
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 3.3e-231 805.4 673 64.5
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 2.2e-230 802.7 621 68.1
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 3.2e-226 788.9 681 61.8
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 3.7e-222 775.4 691 58.6
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 1.5e-220 770.0 709 58.5
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 1.2e-217 760.4 736 57.9
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 8.0e-209 731.1 745 55.6
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 1.9e-202 709.9 696 58.9
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 2.5e-202 709.5 652 58.6
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.8e-200 703.4 652 59.4
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 4.4e-183 645.6 530 62.8
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 3.7e-182 642.5 550 62.5
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 5.6e-162 575.5 503 60.8
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 6.0e-156 555.4 564 57.1
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 3.3e-146 523.1 432 64.6
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 1.9e-141 507.3 690 43.3
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 5.1e-139 499.2 308 88.3
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 7.4e-130 468.8 356 66.0
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 7.4e-122 442.2 429 58.7
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 3.9e-115 419.9 321 68.8
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 4.8e-113 412.9 361 58.4
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.0e-107 395.2 328 66.8
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 1.1e-104 385.2 522 45.6
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 1.7e-102 377.9 380 56.8
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 4.4e-98 363.2 305 60.7
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 1.1e-80 305.4 421 44.2
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 1.2e-71 275.4 309 53.4
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 2.0e-71 274.6 696 32.9
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 1.8e-67 261.5 299 51.5
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 1.7e-65 255.0 368 43.5
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 5.6e-61 240.0 156 78.2
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.3e-59 234.6 263 53.2
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 1.1e-56 225.7 654 28.9
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 7.5e-50 203.0 221 51.6
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 2.9e-49 201.1 187 57.8
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 3.9e-46 190.7 199 55.8
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 7.1e-40 169.9 189 53.4
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 3.9e-38 164.1 118 70.3
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 7.3e-37 159.8 163 56.4
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 7.6e-34 149.8 96 78.1
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 2.1e-31 141.7 135 54.1
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 8.7e-30 136.3 88 75.0
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.5e-29 135.6 195 45.6
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 3.1e-27 127.9 79 78.5
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 9.0e-27 126.3 80 76.2
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 2.9e-25 121.3 140 50.7
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 9.6e-21 106.3 67 80.6
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 6.2e-20 103.6 301 32.2
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 9.9e-18 96.3 107 49.5
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 8.4e-17 93.2 88 59.1
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.4e-16 91.7 118 48.3
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 2.1e-15 88.6 115 44.3
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 1.3e-12 79.3 153 37.3
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 1.5e-10 72.4 49 73.5
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 5.8e-10 70.5 179 31.8


User provided reference genes

Program Settings