Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 1.7e-165 587.8 814 100.0
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 2.7e-150 537.3 804 96.8
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 1.4e-90 339.0 820 83.9
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 1.2e-89 335.9 745 91.3
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 1.1e-87 329.3 247 67.6
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 8.0e-86 323.2 249 67.1
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 2.8e-83 314.7 819 83.0
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.4e-82 310.5 248 66.9
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 5.4e-82 310.5 249 65.9
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 9.1e-82 309.7 248 64.5
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 3.5e-81 307.8 815 79.4
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 2.3e-80 305.1 247 64.0
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 3.8e-80 304.3 249 63.9
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 8.6e-80 303.1 247 63.2
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 1.5e-79 302.4 249 61.4
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 9.5e-79 299.7 248 64.5
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 2.1e-78 298.5 248 64.1
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 4.7e-78 297.4 247 64.0
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 8.0e-78 296.6 782 81.3
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 2.3e-77 295.0 237 66.2
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 1.2e-76 292.7 247 61.9
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 5.7e-76 290.4 247 61.1
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 7.5e-76 290.0 249 62.7
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 1.7e-75 288.9 248 62.1
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 1.7e-75 288.9 246 63.8
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 2.4e-74 285.0 247 60.3
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 7.0e-74 283.5 230 61.7
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 2.3e-72 278.5 809 79.9
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.9e-71 275.4 779 80.1
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 4.3e-71 274.2 820 79.4
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 7.3e-71 273.5 779 68.4
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 1.2e-70 272.7 249 60.2
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 3.6e-70 271.2 779 80.4
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 4.7e-70 270.8 231 60.6
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 6.1e-70 270.4 821 78.6
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 6.1e-70 270.4 218 61.5
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 3.4e-68 264.6 216 62.5
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 3.4e-68 264.6 249 57.8
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 3.4e-68 264.6 244 60.2
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 4.4e-68 264.2 819 77.5
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 3.7e-67 261.2 260 57.7
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 6.4e-67 260.4 238 61.3
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 6.4e-67 260.4 192 68.2
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 6.4e-67 260.4 206 64.6
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 2.4e-66 258.5 167 76.0
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 7.0e-66 256.9 244 56.6
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 1.2e-65 256.1 226 58.4
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 1.2e-65 256.1 244 58.2
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 1.6e-65 255.8 238 58.8
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 4.6e-65 254.2 255 56.5
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 6.0e-65 253.8 230 56.5
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 6.0e-65 253.8 825 77.2
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 1.3e-64 252.7 243 56.0
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 5.0e-64 250.8 250 55.6
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 1.5e-63 249.2 686 93.3
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 2.5e-63 248.4 230 59.1
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 2.5e-63 248.4 252 56.0
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 3.3e-63 248.1 238 56.3
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 3.3e-63 248.1 253 54.2
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 5.6e-63 247.3 213 59.2
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 1.2e-62 246.1 200 63.5
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 1.6e-62 245.7 239 56.9
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 6.2e-62 243.8 244 54.9
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 5.2e-61 240.7 253 51.8
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 1.2e-60 239.6 168 71.4
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 1.5e-60 239.2 266 52.3
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 1.5e-60 239.2 168 71.4
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 2.0e-60 238.8 291 49.5
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.6e-60 238.4 169 74.0
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 4.4e-60 237.7 216 59.3
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 5.8e-60 237.3 257 52.1
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.7e-59 235.7 149 79.2
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.7e-59 235.7 149 79.2
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 2.2e-59 235.3 248 54.0
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 8.3e-59 233.4 168 70.2
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 1.4e-58 232.6 239 56.1
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.9e-58 232.3 200 64.0
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.9e-58 232.3 200 63.0
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 2.1e-57 228.8 251 51.4
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.3e-56 225.3 197 65.0
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 1.1e-55 223.0 238 53.8
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 5.6e-55 220.7 260 48.8
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.8e-54 218.4 195 59.0
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.4e-53 216.1 186 61.8
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 6.6e-48 197.2 225 52.0
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 6.6e-48 197.2 220 50.9
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 1.9e-47 195.7 177 56.5
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 5.6e-47 194.1 200 55.0
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 1.4e-45 189.5 232 50.4
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 2.4e-45 188.7 207 49.8
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 1.2e-44 186.4 218 49.5
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 1.2e-44 186.4 218 49.5
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 1.5e-44 186.0 139 64.7
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 2.0e-44 185.7 223 50.7
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 2.0e-44 185.7 220 48.2
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 2.6e-44 185.3 120 79.2
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 5.8e-44 184.1 221 48.9
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 7.6e-44 183.7 120 79.2
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.2e-43 182.2 155 55.5
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 6.4e-43 180.6 210 50.5
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 1.1e-42 179.9 107 83.2
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 2.4e-42 178.7 222 49.1
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 5.4e-42 177.6 212 49.1
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 3.5e-41 174.9 181 53.6
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.6e-41 174.5 130 69.2
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 3.9e-40 171.4 211 51.2
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 1.1e-39 169.9 212 48.6
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 4.3e-39 167.9 213 47.4
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 5.6e-39 167.5 178 54.5
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.6e-38 166.0 169 57.4
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 4.7e-38 164.5 107 74.8
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 6.2e-38 164.1 155 51.6
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 6.2e-38 164.1 151 53.6
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 6.2e-38 164.1 213 49.3
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 2.6e-36 158.7 151 55.0
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 3.4e-36 158.3 160 49.4
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 2.4e-34 152.1 142 54.9
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 4.2e-34 151.4 224 42.0
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 3.5e-33 148.3 128 53.9
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 1.7e-32 146.0 154 50.0
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 3.9e-32 144.8 211 44.5
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 1.1e-31 143.3 206 47.1
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.8e-29 136.0 114 56.1
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 4.9e-27 127.9 184 42.9
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 9.3e-26 123.6 152 42.8
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 1.3e-24 119.8 152 42.8
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 9.9e-20 103.6 124 46.0
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 1.2e-17 96.7 143 38.5
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 1.5e-15 89.7 155 41.9
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 1.6e-09 69.7 38 86.8
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 1.3e-08 66.6 147 27.9
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 3.9e-08 65.1 147 29.3
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 6.7e-08 64.3 147 28.6
PGR083G0367 Punica granatum HOM05D002453 ORTHO05D002107 2.5e-07 62.4 155 25.8
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 7.4e-07 60.8 150 26.7
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 7.4e-07 60.8 153 28.8
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 1.3e-06 60.1 146 26.7
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 1.3e-06 60.1 154 27.3
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 2.2e-06 59.3 159 27.0
Nitab4.5_0007438g0010 Nicotiana tabacum HOM05D005622 ORTHO05D002854 2.8e-06 58.9 118 34.7
Peaxi162Scf00103g00021 Petunia axillaris HOM05D002453 ORTHO05D002107 4.8e-06 58.2 146 26.0
Sopen06g008520 Solanum pennellii HOM05D002453 ORTHO05D002107 4.8e-06 58.2 142 28.2
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 6.3e-06 57.8 154 27.9
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 6.3e-06 57.8 154 27.9
Lsat_1_v5_gn_1_13300 Lactuca sativa HOM05D002453 ORTHO05D002107 6.3e-06 57.8 154 27.3


User provided reference genes

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