Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013004 Carpinus fangiana HOM05D000290 ORTHO05D008298 7.4e-92 340.5 169 100.0
Haze_21360 Corylus avellana HOM05D000290 ORTHO05D008298 2.5e-79 298.9 159 93.7
Haze_21366 Corylus avellana HOM05D000290 ORTHO05D008298 3.7e-35 152.1 82 92.7
CiPaw.07G233600 Carya illinoinensis HOM05D000290 ORTHO05D008298 1.5e-31 140.2 85 80.0
Gohir.A05G062200 Gossypium hirsutum HOM05D000290 ORTHO05D008298 9.5e-31 137.5 147 50.3
MBI16_g09338_MAGBIO Magnolia biondii HOM05D000290 ORTHO05D008298 2.1e-30 136.3 138 56.5
QL02p017823 Quercus lobata HOM05D000290 ORTHO05D008298 6.8e-29 131.3 84 78.6
QL02p017911 Quercus lobata HOM05D000290 ORTHO05D008298 3.4e-28 129.0 78 82.1
Rhsim07G0167800 Rhododendron simsii HOM05D000290 ORTHO05D008298 7.5e-28 127.9 83 75.9
TAR383G0121 Trochodendron aralioides HOM05D000290 ORTHO05D008298 9.8e-28 127.5 84 79.8
Thecc.09G011600 Theobroma cacao HOM05D000290 ORTHO05D008298 1.3e-27 127.1 84 75.0
FAN27G0560 Fragaria x ananassa HOM05D000290 ORTHO05D008298 2.9e-27 125.9 84 77.4
RcHm_v2.0_Chr6g0299071 Rosa chinensis HOM05D000290 ORTHO05D008298 2.9e-27 125.9 84 77.4
Sc23g0006290 Simmondsia chinensis HOM05D000290 ORTHO05D008298 2.9e-27 125.9 84 73.8
MD08G1050200 Malus domestica HOM05D000290 ORTHO05D008298 6.4e-27 124.8 82 75.6
FAN15G2489 Fragaria x ananassa HOM05D000290 ORTHO05D008298 1.1e-26 124.0 78 82.1
PGR044G1628 Punica granatum HOM05D000290 ORTHO05D008298 1.9e-26 123.2 93 63.4
MD15G1044600 Malus domestica HOM05D000290 ORTHO05D008298 2.4e-26 122.9 82 74.4
Gohir.D06G105800 Gossypium hirsutum HOM05D000290 ORTHO05D008298 3.2e-26 122.5 84 72.6
Gorai.010G120400 Gossypium raimondii HOM05D000290 ORTHO05D008298 3.2e-26 122.5 84 72.6
CANSAT25G2474 Cannabis sativa HOM05D000290 ORTHO05D008298 4.1e-26 122.1 84 73.8
COL.COLO4_18991 Corchorus olitorius HOM05D000290 ORTHO05D008298 7.0e-26 121.3 92 66.3
Actinidia14143 Actinidia chinensis HOM05D000290 ORTHO05D008298 1.2e-25 120.6 84 72.6
Gohir.A06G104000 Gossypium hirsutum HOM05D000290 ORTHO05D008298 1.2e-25 120.6 84 71.4
Lj7C741G3 Lonicera japonica HOM05D000290 ORTHO05D008298 1.2e-25 120.6 82 73.2
Aa31LG11G4140 Aethionema arabicum HOM05D000290 ORTHO05D008298 1.6e-25 120.2 84 71.4
A02p39990 Brassica napus HOM05D000290 ORTHO05D008298 1.6e-25 120.2 146 48.6
Glyma.04G059100 Glycine max HOM05D000290 ORTHO05D008298 1.6e-25 120.2 84 70.2
Sed0026921 Sechium edule HOM05D000290 ORTHO05D008298 1.6e-25 120.2 83 72.3
Eucgr.C04023 Eucalyptus grandis HOM05D000290 ORTHO05D008298 2.0e-25 119.8 84 73.8
Glyma.06G059800 Glycine max HOM05D000290 ORTHO05D008298 2.0e-25 119.8 84 70.2
VMungo1309G1149 Vigna mungo HOM05D000290 ORTHO05D008298 2.0e-25 119.8 84 69.0
Cc00_g02670 Coffea canephora HOM05D000290 ORTHO05D008298 2.7e-25 119.4 93 62.4
Migut.E01437 Erythranthe guttata HOM05D000290 ORTHO05D008298 2.7e-25 119.4 83 72.3
Gorai.009G065400 Gossypium raimondii HOM05D000290 ORTHO05D008298 2.7e-25 119.4 84 71.4
BraA02t08962Z Brassica rapa HOM05D000290 ORTHO05D008298 3.5e-25 119.0 101 62.4
arahy.Tifrunner.gnm1.ann1.M4CDZT Arachis hypogaea HOM05D000290 ORTHO05D008298 4.6e-25 118.6 83 68.7
arahy.Tifrunner.gnm1.ann1.XGVI2Q Arachis hypogaea HOM05D000290 ORTHO05D008298 4.6e-25 118.6 83 68.7
Thhalv10003765m.g Eutrema salsugineum HOM05D000290 ORTHO05D008298 4.6e-25 118.6 84 70.2
Nn8g40890 Nelumbo nucifera HOM05D000290 ORTHO05D008298 4.6e-25 118.6 84 72.6
AL6G36630 Arabidopsis lyrata HOM05D000290 ORTHO05D008298 6.0e-25 118.2 128 52.3
BolC2t12046H Brassica oleracea HOM05D000290 ORTHO05D008298 6.0e-25 118.2 93 67.7
Phvul.009G085500 Phaseolus vulgaris HOM05D000290 ORTHO05D008298 6.0e-25 118.2 84 67.9
Gohir.D05G064700 Gossypium hirsutum HOM05D000290 ORTHO05D008298 7.8e-25 117.9 84 70.2
SGA_v2.0_scaffold4G02159 Striga asiatica HOM05D000290 ORTHO05D008298 7.8e-25 117.9 82 69.5
EL10Ac2g02437 Beta vulgaris HOM05D000290 ORTHO05D008298 1.0e-24 117.5 84 69.0
Sp2g22500 Schrenkiella parvula HOM05D000290 ORTHO05D008298 1.0e-24 117.5 84 70.2
AT5G24970 Arabidopsis thaliana HOM05D000290 ORTHO05D008298 1.3e-24 117.1 84 69.0
PSO170G1117 Papaver somniferum HOM05D000290 ORTHO05D008298 1.3e-24 117.1 83 69.9
MELO3C011316.2 Cucumis melo HOM05D000290 ORTHO05D008298 1.7e-24 116.7 84 69.0
TPR.G1883 Trifolium pratense HOM05D000290 ORTHO05D008298 1.7e-24 116.7 84 69.0
Atru.BG.5.p Acer truncatum HOM05D000290 ORTHO05D008298 2.3e-24 116.3 83 71.1
Duzib168G0098 Durio zibethinus HOM05D000290 ORTHO05D008298 2.3e-24 116.3 84 70.2
C02p59880 Brassica napus HOM05D000290 ORTHO05D008298 3.0e-24 115.9 83 71.1
CAN.G273.7 Capsicum annuum HOM05D000290 ORTHO05D008298 3.0e-24 115.9 82 67.1
ClCG08G013850 Citrullus lanatus HOM05D000290 ORTHO05D008298 3.0e-24 115.9 83 69.9
CsaV3_2G032630 Cucumis sativus L. HOM05D000290 ORTHO05D008298 3.0e-24 115.9 84 69.0
Nitab4.5_0000502g0240 Nicotiana tabacum HOM05D000290 ORTHO05D008298 3.0e-24 115.9 82 69.5
BolC7t44809H Brassica oleracea HOM05D000290 ORTHO05D008298 5.0e-24 115.2 93 65.6
BraA06t26497Z Brassica rapa HOM05D000290 ORTHO05D008298 5.0e-24 115.2 93 65.6
Nitab4.5_0000341g0060 Nicotiana tabacum HOM05D000290 ORTHO05D008298 5.0e-24 115.2 82 69.5
Oeu006853.1 Olea europaea HOM05D000290 ORTHO05D008298 5.0e-24 115.2 83 69.9
PSO063G1469 Papaver somniferum HOM05D000290 ORTHO05D008298 5.0e-24 115.2 84 67.9
Peaxi162Scf00288g00514 Petunia axillaris HOM05D000290 ORTHO05D008298 5.0e-24 115.2 82 69.5
A06p35730 Brassica napus HOM05D000290 ORTHO05D008298 8.6e-24 114.4 92 66.3
C07p42810 Brassica napus HOM05D000290 ORTHO05D008298 8.6e-24 114.4 92 66.3
DCAR_024369 Daucus carota HOM05D000290 ORTHO05D008298 8.6e-24 114.4 90 63.3
HPP92_021994 Vanilla planifolia HOM05D000290 ORTHO05D008298 8.6e-24 114.4 133 50.4
GSVIVG01036033001 Vitis vinifera HOM05D000290 ORTHO05D008298 8.6e-24 114.4 84 71.4
Carub.0006s2283 Capsella rubella HOM05D000290 ORTHO05D008298 1.1e-23 114.0 84 67.9
Solyc08g068920.4 Solanum lycopersicum HOM05D000290 ORTHO05D008298 1.1e-23 114.0 83 65.1
Sopen08g022600 Solanum pennellii HOM05D000290 ORTHO05D008298 1.1e-23 114.0 83 65.1
AUR62020309 Chenopodium quinoa HOM05D000290 ORTHO05D008298 1.9e-23 113.2 88 63.6
Lalb_Chr11g0063471 Lupinus albus HOM05D000290 ORTHO05D008298 2.5e-23 112.8 84 67.9
THA.LOC104803329 Tarenaya hassleriana HOM05D000290 ORTHO05D008298 3.3e-23 112.5 84 69.0
SalBow8G0275 Salvia bowleyana HOM05D000290 ORTHO05D008298 4.3e-23 112.1 103 56.3
TWI63G1288 Tripterygium wilfordii HOM05D000290 ORTHO05D008298 4.3e-23 112.1 84 69.0
Ah.12g060370 Amaranthus hybridus HOM05D000290 ORTHO05D008298 5.6e-23 111.7 82 67.1
CARHR188460 Cardamine hirsuta HOM05D000290 ORTHO05D008298 5.6e-23 111.7 84 66.7
AUR62037695 Chenopodium quinoa HOM05D000290 ORTHO05D008298 7.3e-23 111.3 83 66.3
Medtr3g105760 Medicago truncatula HOM05D000290 ORTHO05D008298 7.3e-23 111.3 83 63.9
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 9.5e-23 110.9 100 58.0
unitig_46.g18220 Utricularia gibba HOM05D000290 ORTHO05D008298 9.5e-23 110.9 83 67.5
Ciclev10010214m.g Citrus clementina HOM05D000290 ORTHO05D008298 1.6e-22 110.2 83 69.9
HanXRQChr17g0537191 Helianthus annuus HOM05D000290 ORTHO05D008298 2.8e-22 109.4 88 62.5
Sabra18G0017700 Salix brachista HOM05D000290 ORTHO05D008298 3.6e-22 109.0 82 68.3
ATR0580G105 Amborella trichopoda HOM05D000290 ORTHO05D008298 4.7e-22 108.6 84 66.7
Aqoxy7G02929 Aquilegia oxysepala HOM05D000290 ORTHO05D008298 6.2e-22 108.2 93 63.4
Potri.018G014000 Populus trichocarpa HOM05D000290 ORTHO05D008298 6.2e-22 108.2 82 68.3
Lsat_1_v5_gn_3_23500 Lactuca sativa HOM05D000290 ORTHO05D008298 1.1e-21 107.5 83 66.3
Prupe.1G398500 Prunus persica HOM05D000290 ORTHO05D008298 1.2e-20 104.0 84 63.1
SHI21097 Sapria himalayana HOM05D000290 ORTHO05D008298 2.0e-20 103.2 83 65.1
Os07g0459200 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D008298 1.7e-19 100.1 83 57.8
SEGI_23400 Sequoiadendron giganteum HOM05D000290 ORTHO05D008298 1.9e-18 96.7 78 65.4
FvH4_2g41400 Fragaria vesca HOM05D000290 ORTHO05D008298 1.1e-15 87.4 64 70.3
Ca_15791_v3 Cicer arietinum L. HOM05D000290 ORTHO05D008298 3.6e-14 82.4 69 60.9
Duzib187G1815 Durio zibethinus HOM05D000290 ORTHO05D008298 3.1e-13 79.3 97 48.5
Dinv10141 Davidia involucrata HOM05D000290 ORTHO05D008298 1.9e-10 70.1 43 76.7
vmacro05114 Vaccinium macrocarpon HOM05D000290 ORTHO05D008298 4.1e-10 68.9 61 63.9
Manes.03G006200 Manihot esculenta HOM05D000290 ORTHO05D008298 2.1e-09 66.6 45 66.7


User provided reference genes

Program Settings