Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 4.9e-48 194.1 97 100.0
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 1.1e-34 149.8 97 78.4
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 9.0e-34 146.7 77 93.5
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 2.6e-33 145.2 73 97.3
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 2.1e-30 135.6 73 91.8
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 3.5e-30 134.8 92 73.9
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 2.8e-27 125.2 102 63.7
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 2.8e-27 125.2 102 65.7
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 2.4e-26 122.1 86 70.9
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 5.3e-26 120.9 103 62.1
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 5.3e-26 120.9 86 69.8
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 6.9e-26 120.6 99 64.6
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 6.9e-26 120.6 93 64.5
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 9.0e-26 120.2 102 61.8
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 1.2e-25 119.8 86 69.8
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 3.4e-25 118.2 96 59.4
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 6.4e-24 114.0 86 62.8
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 6.4e-24 114.0 91 64.8
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 7.1e-23 110.5 82 62.2
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 1.6e-22 109.4 90 64.4
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 2.7e-22 108.6 106 58.5
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 3.5e-22 108.2 80 66.2
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 7.9e-22 107.1 97 59.8
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 1.0e-21 106.7 91 59.3
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 1.8e-21 105.9 80 65.0
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 3.0e-21 105.1 93 63.4
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 3.9e-21 104.8 81 63.0
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 5.1e-21 104.4 98 54.1
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 5.1e-21 104.4 97 53.6
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 5.1e-21 104.4 80 63.8
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 6.7e-21 104.0 84 60.7
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 6.7e-21 104.0 100 55.0
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 6.7e-21 104.0 97 53.6
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 8.7e-21 103.6 101 52.5
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 1.1e-20 103.2 85 57.6
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 1.5e-20 102.8 96 58.3
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.9e-20 102.4 73 63.0
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 2.5e-20 102.1 86 57.0
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 2.5e-20 102.1 86 57.0
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 5.6e-20 100.9 80 58.8
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 7.4e-20 100.5 81 56.8
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 7.4e-20 100.5 81 56.8
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 7.4e-20 100.5 91 57.1
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 7.4e-20 100.5 88 55.7
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 7.4e-20 100.5 96 57.3
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 1.3e-19 99.8 103 50.5
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 1.6e-19 99.4 101 54.5
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 2.1e-19 99.0 79 63.3
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 2.1e-19 99.0 102 52.0
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 2.8e-19 98.6 80 58.8
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 3.7e-19 98.2 76 65.8
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 3.7e-19 98.2 97 53.6
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 4.8e-19 97.8 83 62.7
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 6.2e-19 97.4 100 55.0
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 6.2e-19 97.4 78 65.4
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 8.2e-19 97.1 95 52.6
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 1.1e-18 96.7 83 62.7
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 1.4e-18 96.3 107 48.6
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 1.8e-18 95.9 74 63.5
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 1.8e-18 95.9 96 53.1
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.1e-18 95.1 103 51.5
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.1e-18 95.1 103 51.5
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 6.9e-18 94.0 74 62.2
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 9.0e-18 93.6 74 66.2
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 1.2e-17 93.2 74 63.5
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 1.2e-17 93.2 69 66.7
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 1.5e-17 92.8 103 50.5
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.5e-17 92.8 103 50.5
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.5e-17 92.8 103 50.5
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 2.0e-17 92.4 74 63.5
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.0e-17 92.4 103 50.5
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.0e-17 92.4 103 50.5
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 2.6e-17 92.0 65 66.2
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 2.6e-17 92.0 65 66.2
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 4.5e-17 91.3 74 62.2
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 5.8e-17 90.9 75 66.7
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 5.8e-17 90.9 78 60.3
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 5.8e-17 90.9 78 61.5
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 1.7e-16 89.4 81 56.8
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 2.2e-16 89.0 79 58.2
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 2.9e-16 88.6 98 50.0
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 3.8e-16 88.2 78 56.4
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 3.8e-16 88.2 98 50.0
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 3.8e-16 88.2 81 56.8
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 4.9e-16 87.8 76 56.6
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 6.5e-16 87.4 63 63.5
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 8.4e-16 87.0 107 43.0
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.1e-15 86.7 68 57.4
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 1.4e-15 86.3 75 57.3
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 3.2e-15 85.1 77 57.1
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 3.2e-15 85.1 79 51.9
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 4.2e-15 84.7 80 55.0
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 5.5e-15 84.3 76 59.2
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 1.2e-14 83.2 71 59.2
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 1.2e-14 83.2 96 47.9
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 3.5e-14 81.6 62 64.5
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 7.9e-14 80.5 87 55.2
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 1.0e-13 80.1 72 59.7
HPP92_014505 Vanilla planifolia HOM05D006948 ORTHO05D008703 1.3e-13 79.7 66 56.1
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 1.8e-13 79.3 72 59.7
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 2.5e-12 75.5 91 46.2
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 2.5e-12 75.5 81 53.1
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 2.5e-12 75.5 81 53.1
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 9.7e-12 73.6 71 56.3
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 4.8e-11 71.2 53 69.8
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 8.2e-11 70.5 92 42.4
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 1.4e-10 69.7 71 47.9
ATR0767G212 Amborella trichopoda HOM05D006948 ORTHO05D008703 4.1e-10 68.2 72 54.2
SEGI_25204 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 6.9e-10 67.4 76 52.6
SEGI_39218 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 6.9e-10 67.4 76 52.6
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 5.9e-09 64.3 48 66.7
DCAR_025075 Daucus carota HOM05D006948 ORTHO05D008703 1.0e-08 63.5 70 50.0
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 5.0e-08 61.2 51 64.7


User provided reference genes

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