Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012983 Carpinus fangiana HOM05D006246 ORTHO05D007932 5.2e-36 154.5 118 100.0
Haze_21346 Corylus avellana HOM05D006246 ORTHO05D007932 3.9e-31 138.3 119 92.4
Haze_21352 Corylus avellana HOM05D006246 ORTHO05D007932 1.1e-30 136.7 118 89.8
Atru.chr3.3065 Acer truncatum HOM05D006246 ORTHO05D007932 4.2e-17 91.7 83 65.1
Atru.chr13.2337 Acer truncatum HOM05D006246 ORTHO05D007932 7.1e-17 90.9 83 65.1
TWI14G1413 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 1.2e-16 90.1 90 53.3
Cpa.g.sc49.43 Carica papaya HOM05D006246 ORTHO05D007932 1.6e-16 89.7 83 67.5
FAN18G0928 Fragaria x ananassa HOM05D006246 ORTHO05D007932 2.7e-16 89.0 75 64.0
THA.LOC104826210 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 2.7e-16 89.0 74 66.2
Lalb_Chr01g0009371 Lupinus albus HOM05D006246 ORTHO05D007932 4.6e-16 88.2 116 45.7
Thhalv10017462m.g Eutrema salsugineum HOM05D006246 ORTHO05D007932 1.3e-15 86.7 83 61.4
Sp4g13780 Schrenkiella parvula HOM05D006246 ORTHO05D007932 1.3e-15 86.7 74 63.5
THA.LOC104800880 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 1.3e-15 86.7 74 63.5
TWI59G0384 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 2.3e-15 85.9 86 57.0
Ciclev10002937m.g Citrus clementina HOM05D006246 ORTHO05D007932 3.9e-15 85.1 81 59.3
BcaC02g11223 Brassica carinata HOM05D006246 ORTHO05D007932 5.1e-15 84.7 83 60.2
BolC4t23440H Brassica oleracea HOM05D006246 ORTHO05D007932 5.1e-15 84.7 83 60.2
Aa31LG5G5660 Aethionema arabicum HOM05D006246 ORTHO05D007932 6.7e-15 84.3 74 62.2
Carub.0004s1261 Capsella rubella HOM05D006246 ORTHO05D007932 6.7e-15 84.3 73 63.0
CARHR124920 Cardamine hirsuta HOM05D006246 ORTHO05D007932 6.7e-15 84.3 73 63.0
DCAR_027686 Daucus carota HOM05D006246 ORTHO05D007932 8.7e-15 84.0 79 75.9
SHI11488 Sapria himalayana HOM05D006246 ORTHO05D007932 8.7e-15 84.0 73 63.0
QL02p028696 Quercus lobata HOM05D006246 ORTHO05D007932 1.1e-14 83.6 91 71.4
Sp1g40730 Schrenkiella parvula HOM05D006246 ORTHO05D007932 1.1e-14 83.6 74 62.2
A05p14300 Brassica napus HOM05D006246 ORTHO05D007932 1.5e-14 83.2 79 59.5
Phvul.009G159900 Phaseolus vulgaris HOM05D006246 ORTHO05D007932 1.5e-14 83.2 84 70.2
BcaB02g10382 Brassica carinata HOM05D006246 ORTHO05D007932 1.9e-14 82.8 83 57.8
FvH4_5g18370 Fragaria vesca HOM05D006246 ORTHO05D007932 1.9e-14 82.8 44 88.6
FAN08G0289 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.9e-14 82.8 44 88.6
FAN13G0403 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.9e-14 82.8 44 88.6
Lalb_Chr03g0034581 Lupinus albus HOM05D006246 ORTHO05D007932 1.9e-14 82.8 113 53.1
Psat6g198440 Pisum sativum HOM05D006246 ORTHO05D007932 2.5e-14 82.4 84 69.0
Carub.0002s2226 Capsella rubella HOM05D006246 ORTHO05D007932 9.6e-14 80.5 80 56.2
Actinidia30538 Actinidia chinensis HOM05D006246 ORTHO05D007932 1.3e-13 80.1 45 84.4
Glyma.06G161300 Glycine max HOM05D006246 ORTHO05D007932 1.6e-13 79.7 84 69.0
Medtr1g101240 Medicago truncatula HOM05D006246 ORTHO05D007932 1.6e-13 79.7 85 67.1
Ca_00010_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 2.1e-13 79.3 44 86.4
Ca_00013_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 2.1e-13 79.3 44 86.4
Sc23g0001630 Simmondsia chinensis HOM05D006246 ORTHO05D007932 2.1e-13 79.3 56 78.6
Potri.005G067400 Populus trichocarpa HOM05D006246 ORTHO05D007932 3.7e-13 78.6 45 82.2
Glyma.04G204100 Glycine max HOM05D006246 ORTHO05D007932 4.8e-13 78.2 85 68.2
TPR.G26967 Trifolium pratense HOM05D006246 ORTHO05D007932 4.8e-13 78.2 44 84.1
Migut.N03358 Erythranthe guttata HOM05D006246 ORTHO05D007932 8.1e-13 77.4 44 84.1
Lj5g0026305 Lotus japonicus HOM05D006246 ORTHO05D007932 8.1e-13 77.4 57 80.7
CSS0014325 Camellia sinensis var. sinensis HOM05D006246 ORTHO05D007932 1.1e-12 77.0 37 89.2
Potri.007G101900 Populus trichocarpa HOM05D006246 ORTHO05D007932 1.1e-12 77.0 43 86.0
SalBow8G1996 Salvia bowleyana HOM05D006246 ORTHO05D007932 1.1e-12 77.0 45 82.2
SGA_v2.0_scaffold118G32544 Striga asiatica HOM05D006246 ORTHO05D007932 1.1e-12 77.0 45 82.2
Oeu021218.1 Olea europaea HOM05D006246 ORTHO05D007932 1.4e-12 76.6 45 82.2
Eucgr.I02713 Eucalyptus grandis HOM05D006246 ORTHO05D007932 1.8e-12 76.3 47 78.7
A05p14510 Brassica napus HOM05D006246 ORTHO05D007932 2.4e-12 75.9 45 77.8
HanXRQChr11g0322351 Helianthus annuus HOM05D006246 ORTHO05D007932 2.4e-12 75.9 37 86.5
Sabra07G0084000 Salix brachista HOM05D006246 ORTHO05D007932 4.0e-12 75.1 42 83.3
SGA_v2.0_scaffold24G10594 Striga asiatica HOM05D006246 ORTHO05D007932 4.0e-12 75.1 88 63.6
TPR.G20664 Trifolium pratense HOM05D006246 ORTHO05D007932 4.0e-12 75.1 42 83.3
Duzib114G0955 Durio zibethinus HOM05D006246 ORTHO05D007932 5.3e-12 74.7 45 77.8
MBI03_g07695_MAGBIO Magnolia biondii HOM05D006246 ORTHO05D007932 5.3e-12 74.7 42 81.0
Duzib106G0997 Durio zibethinus HOM05D006246 ORTHO05D007932 6.9e-12 74.3 44 79.5
Thecc.03G070200 Theobroma cacao HOM05D006246 ORTHO05D007932 6.9e-12 74.3 44 79.5
Gorai.009G310900 Gossypium raimondii HOM05D006246 ORTHO05D007932 9.0e-12 73.9 44 79.5
Sabra05G0055400 Salix brachista HOM05D006246 ORTHO05D007932 9.0e-12 73.9 44 79.5
Aqoxy7G03540 Aquilegia oxysepala HOM05D006246 ORTHO05D007932 1.2e-11 73.6 45 77.8
arahy.Tifrunner.gnm1.ann1.V9PSGM Arachis hypogaea HOM05D006246 ORTHO05D007932 1.2e-11 73.6 43 79.1
CDE02G3719 Ceratophyllum demersum HOM05D006246 ORTHO05D007932 1.2e-11 73.6 86 48.8
Migut.C01275 Erythranthe guttata HOM05D006246 ORTHO05D007932 1.2e-11 73.6 58 63.8
TWI23G1247 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 1.5e-11 73.2 86 67.4
vmacro01162 Vaccinium macrocarpon HOM05D006246 ORTHO05D007932 1.5e-11 73.2 34 91.2
COL.COLO4_29720 Corchorus olitorius HOM05D006246 ORTHO05D007932 2.0e-11 72.8 43 81.4
HPP92_026670 Vanilla planifolia HOM05D006246 ORTHO05D007932 2.0e-11 72.8 81 50.6
PSO170G6052 Papaver somniferum HOM05D006246 ORTHO05D007932 2.6e-11 72.4 45 75.6
PSO782G0303 Papaver somniferum HOM05D006246 ORTHO05D007932 2.6e-11 72.4 45 75.6
Sed0027909 Sechium edule HOM05D006246 ORTHO05D007932 2.6e-11 72.4 88 64.8
BraA05t20382Z Brassica rapa HOM05D006246 ORTHO05D007932 3.4e-11 72.0 44 75.0
CDE09G0543 Ceratophyllum demersum HOM05D000196 ORTHO05D000279 3.4e-11 72.0 86 47.7
Gohir.A05G293700 Gossypium hirsutum HOM05D006246 ORTHO05D007932 3.4e-11 72.0 43 79.1
Gohir.A05G410500 Gossypium hirsutum HOM05D006246 ORTHO05D007932 3.4e-11 72.0 41 85.4
Gohir.D05G294400 Gossypium hirsutum HOM05D006246 ORTHO05D007932 3.4e-11 72.0 43 79.1
MD06G1239400 Malus domestica HOM05D006246 ORTHO05D007932 4.5e-11 71.6 35 85.7
Sed0011737 Sechium edule HOM05D006246 ORTHO05D007932 4.5e-11 71.6 34 88.2
Actinidia08157 Actinidia chinensis HOM05D006246 ORTHO05D007932 7.6e-11 70.9 37 78.4
TAR636G3186 Trochodendron aralioides HOM05D006246 ORTHO05D007932 9.9e-11 70.5 34 88.2
Medtr7g085440 Medicago truncatula HOM05D006246 ORTHO05D007932 1.3e-10 70.1 84 60.7
Cc05_g03280 Coffea canephora HOM05D006246 ORTHO05D007932 1.7e-10 69.7 35 85.7
Duzib128G0188 Durio zibethinus HOM05D006246 ORTHO05D007932 1.7e-10 69.7 35 85.7
FAN04G2944 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.7e-10 69.7 41 85.4
Os05g0270400 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 2.2e-10 69.3 45 73.3
Os04g0295000 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 2.9e-10 68.9 77 64.9
Zm00001eb059790 Zea mays HOM05D006246 ORTHO05D007932 6.4e-10 67.8 46 69.6
CAN.G1647.5 Capsicum annuum HOM05D006246 ORTHO05D007932 1.9e-09 66.2 36 77.8
Ah.05g178740 Amaranthus hybridus HOM05D006246 ORTHO05D007932 3.2e-09 65.5 34 79.4
Nitab4.5_0001579g0010 Nicotiana tabacum HOM05D006246 ORTHO05D007932 9.3e-09 63.9 35 74.3
CARHR068770 Cardamine hirsuta HOM05D006246 ORTHO05D007932 1.2e-08 63.5 49 65.3
CANSAT01G1683 Cannabis sativa HOM05D006246 ORTHO05D007932 1.6e-08 63.2 70 71.4
AagrBONN_evm.TU.Sc2ySwM_344.1565 Anthoceros agrestis HOM05D006246 ORTHO05D007932 3.5e-08 62.0 44 63.6
Nitab4.5_0000365g0140 Nicotiana tabacum HOM05D006246 ORTHO05D007932 4.6e-08 61.6 34 76.5
BcaB06g28525 Brassica carinata HOM05D006246 ORTHO05D007932 6.0e-08 61.2 76 51.3
BolC4t27573H Brassica oleracea HOM05D006246 ORTHO05D007932 6.0e-08 61.2 76 51.3
Mapoly0071s0091 Marchantia polymorpha HOM05D006246 ORTHO05D007932 6.0e-08 61.2 85 40.0
Gohir.A05G410100 Gossypium hirsutum HOM05D006246 ORTHO05D007932 3.9e-07 58.5 35 82.9
Sc26g0000490 Simmondsia chinensis HOM05D006246 ORTHO05D007932 3.9e-07 58.5 42 69.0
A04p24110 Brassica napus HOM05D006246 ORTHO05D007932 3.3e-06 55.5 66 53.0
C04p60820 Brassica napus HOM05D006246 ORTHO05D007932 3.3e-06 55.5 66 53.0
BraA04t17931Z Brassica rapa HOM05D006246 ORTHO05D007932 3.3e-06 55.5 66 53.0
PRCOL_00001132 Prasinoderma coloniale HOM05D006246 ORTHO05D007932 4.3e-06 55.1 41 61.0


User provided reference genes

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